© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|8593 |
| Gene name | |
| Location | Contig_570:7930..9731 |
| Strand | - |
| Gene length (bp) | 1801 |
| Transcript length (bp) | 1662 |
| Coding sequence length (bp) | 1662 |
| Protein length (aa) | 554 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01398 | JAB | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 3.7E-13 | 372 | 477 |
| PF08969 | USP8_dimer | USP8 dimerisation domain | 3.0E-08 | 19 | 119 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P371|SST2_SCHPO | AMSH-like protease sst2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sst2 PE=1 SV=1 | 358 | 550 | 6.0E-55 |
| sp|Q8VYB5|AMSH1_ARATH | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana GN=AMSH1 PE=2 SV=1 | 34 | 548 | 1.0E-45 |
| sp|Q5PNU3|AMSH3_ARATH | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana GN=AMSH3 PE=1 SV=2 | 25 | 548 | 3.0E-43 |
| sp|Q6TH47|STBPA_DANRE | STAM-binding protein-like A OS=Danio rerio GN=stambpa PE=2 SV=3 | 319 | 518 | 1.0E-41 |
| sp|O95630|STABP_HUMAN | STAM-binding protein OS=Homo sapiens GN=STAMBP PE=1 SV=1 | 352 | 521 | 2.0E-41 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P371|SST2_SCHPO | AMSH-like protease sst2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sst2 PE=1 SV=1 | 358 | 550 | 6.0E-55 |
| sp|Q8VYB5|AMSH1_ARATH | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana GN=AMSH1 PE=2 SV=1 | 34 | 548 | 1.0E-45 |
| sp|Q5PNU3|AMSH3_ARATH | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana GN=AMSH3 PE=1 SV=2 | 25 | 548 | 3.0E-43 |
| sp|Q6TH47|STBPA_DANRE | STAM-binding protein-like A OS=Danio rerio GN=stambpa PE=2 SV=3 | 319 | 518 | 1.0E-41 |
| sp|O95630|STABP_HUMAN | STAM-binding protein OS=Homo sapiens GN=STAMBP PE=1 SV=1 | 352 | 521 | 2.0E-41 |
| sp|Q54Q40|D1039_DICDI | Probable ubiquitin thioesterase DG1039 OS=Dictyostelium discoideum GN=DG1039 PE=3 SV=1 | 310 | 518 | 2.0E-41 |
| sp|Q63ZM7|STABP_XENLA | STAM-binding protein-like OS=Xenopus laevis GN=stambp PE=2 SV=1 | 323 | 518 | 1.0E-40 |
| sp|Q8R424|STABP_RAT | STAM-binding protein OS=Rattus norvegicus GN=Stambp PE=2 SV=1 | 298 | 521 | 2.0E-39 |
| sp|Q9CQ26|STABP_MOUSE | STAM-binding protein OS=Mus musculus GN=Stambp PE=1 SV=1 | 298 | 521 | 2.0E-39 |
| sp|Q96FJ0|STALP_HUMAN | AMSH-like protease OS=Homo sapiens GN=STAMBPL1 PE=1 SV=2 | 369 | 519 | 1.0E-37 |
| sp|Q5R558|STALP_PONAB | AMSH-like protease OS=Pongo abelii GN=STAMBPL1 PE=2 SV=1 | 369 | 519 | 6.0E-37 |
| sp|Q76N33|STALP_MOUSE | AMSH-like protease OS=Mus musculus GN=Stambpl1 PE=1 SV=1 | 348 | 521 | 3.0E-36 |
| sp|Q6NKP9|AMSH2_ARATH | AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana GN=AMSH2 PE=2 SV=1 | 371 | 548 | 2.0E-35 |
| sp|Q9P371|SST2_SCHPO | AMSH-like protease sst2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sst2 PE=1 SV=1 | 15 | 145 | 1.0E-09 |
| sp|Q6FKA3|RFU1_CANGA | Regulator of free ubiquitin chains 1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RFU1 PE=3 SV=1 | 21 | 131 | 5.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|8593 MEPRSPRPPPRPSRPPTISALVAQAENFTFNANIPFKHWVRAAETLHQEASFAMSDGDYGRAYWLLYRHSKLVLE HMPSHPRYRDRDSRLMFRSLSRRIDSVLDELERLKPGLEDEYEKWEQANARPARQPSTPSAPTSPASYADFAARD PSLYGPARVLDASEHRELAVDLARKELARRDRAKRAARAQLAPPASPTSGHAAHRDGRSLDAHEDDFRRQMEAAR RALSLSQLSGRTEGRAAGPGGAHQPIPAPFNYPSIARSRPVDDDAAHRQRRPPAAPAPDRPPKESLAPSTSQDPS VCTPNADGLLPAVPRKLPLEDQAGPPPPASSAPANQPPLPPKGLPVDGPPLPRRDRLTFKPGAYLENGDPIRSVF IPSQLRSAFLDMADDNTRAGLEMCGIICGMPVNNALFVRSLIIPDQRCTSDTCETENEGAIFDYCSSEDLIVLGW IHTHPTQTCFMSSRDLHTHAGYQVMMPESIAIVCAPRFKPSYGIFRLTHPPGLEHILDCKHQDTFHQHSIDNIYR DSEHPGGHVYESDTLPFYVRDLRTKPTF* |
| Coding | >Hirsu2|8593 ATGGAGCCGCGCTCGCCTCGTCCGCCGCCGCGGCCCTCGCGCCCGCCGACCATCAGCGCGCTGGTCGCCCAGGCC GAGAACTTCACCTTCAACGCAAACATCCCGTTCAAGCACTGGGTCAGAGCGGCCGAGACGCTGCATCAAGAGGCC TCCTTCGCCATGTCCGACGGCGACTACGGCCGTGCCTACTGGCTGCTCTATCGCCACTCGAAACTCGTCCTCGAG CACATGCCCTCGCACCCGCGCTACAGGGACCGTGACAGCCGCCTCATGTTTCGCTCCTTGTCCCGACGCATCGAC AGCGTCCTCGACGAACTAGAGCGCCTCAAACCCGGCCTGGAAGACGAATATGAGAAATGGGAGCAGGCCAACGCG CGCCCCGCTCGACAGCCGAGCACGCCAAGCGCACCGACGTCGCCAGCCAGCTACGCCGACTTTGCCGCACGCGAC CCCAGCCTGTATGGCCCTGCCCGCGTGCTCGACGCCTCGGAGCACCGCGAGCTGGCCGTTGACTTGGCCCGGAAG GAGCTGGCGCGGAGAGATAGGGCCAAACGGGCGGCCAGGGCACAGCTTGCGCCACCTGCTTCGCCGACGAGCGGC CACGCCGCCCACCGAGACGGTAGATCCCTAGACGCCCATGAAGATGACTTTCGTCGGCAGATGGAAGCCGCCAGG CGCGCTTTGAGCCTCAGTCAGCTGTCGGGAAGAACAGAAGGGAGGGCGGCCGGGCCCGGTGGTGCTCACCAGCCG ATCCCGGCTCCGTTCAATTATCCCTCGATAGCCAGGTCGAGGCCCGTCGACGACGATGCCGCCCATCGCCAGCGG CGCCCACCCGCAGCGCCGGCGCCTGACCGGCCGCCCAAGGAGAGCCTGGCGCCGTCAACGAGCCAGGACCCGTCG GTTTGTACCCCCAATGCCGATGGCCTGCTGCCAGCCGTTCCACGCAAACTGCCGCTGGAGGACCAAGCCGGACCT CCTCCGCCGGCCTCCTCCGCTCCTGCTAATCAACCCCCTTTACCGCCAAAGGGACTGCCCGTGGATGGACCGCCG CTCCCTAGGAGAGATCGGCTCACGTTTAAGCCCGGGGCGTACCTCGAGAACGGCGACCCGATCCGATCCGTCTTC ATCCCCAGCCAGCTACGGTCGGCCTTCCTCGACATGGCCGACGACAACACGCGGGCTGGTCTGGAAATGTGCGGC ATCATCTGCGGCATGCCGGTCAACAACGCCCTGTTCGTGCGCAGCTTGATCATTCCCGATCAGAGGTGCACGTCG GACACGTGCGAAACAGAAAACGAAGGTGCGATATTCGACTATTGCTCCAGCGAGGATTTGATTGTTCTGGGATGG ATCCACACGCACCCGACGCAGACGTGCTTCATGAGCTCTCGCGACTTGCACACGCACGCCGGCTACCAGGTCATG ATGCCAGAGAGCATCGCCATCGTCTGCGCTCCCAGATTCAAGCCATCATACGGAATCTTTCGCCTCACCCATCCT CCCGGCCTCGAACACATCCTGGACTGCAAACACCAGGATACCTTCCATCAGCATTCGATCGACAACATATATCGC GACTCGGAGCACCCGGGTGGCCACGTCTACGAAAGCGATACCTTGCCCTTTTACGTCAGGGACCTGCGAACGAAG CCGACATTTTAG |
| Transcript | >Hirsu2|8593 ATGGAGCCGCGCTCGCCTCGTCCGCCGCCGCGGCCCTCGCGCCCGCCGACCATCAGCGCGCTGGTCGCCCAGGCC GAGAACTTCACCTTCAACGCAAACATCCCGTTCAAGCACTGGGTCAGAGCGGCCGAGACGCTGCATCAAGAGGCC TCCTTCGCCATGTCCGACGGCGACTACGGCCGTGCCTACTGGCTGCTCTATCGCCACTCGAAACTCGTCCTCGAG CACATGCCCTCGCACCCGCGCTACAGGGACCGTGACAGCCGCCTCATGTTTCGCTCCTTGTCCCGACGCATCGAC AGCGTCCTCGACGAACTAGAGCGCCTCAAACCCGGCCTGGAAGACGAATATGAGAAATGGGAGCAGGCCAACGCG CGCCCCGCTCGACAGCCGAGCACGCCAAGCGCACCGACGTCGCCAGCCAGCTACGCCGACTTTGCCGCACGCGAC CCCAGCCTGTATGGCCCTGCCCGCGTGCTCGACGCCTCGGAGCACCGCGAGCTGGCCGTTGACTTGGCCCGGAAG GAGCTGGCGCGGAGAGATAGGGCCAAACGGGCGGCCAGGGCACAGCTTGCGCCACCTGCTTCGCCGACGAGCGGC CACGCCGCCCACCGAGACGGTAGATCCCTAGACGCCCATGAAGATGACTTTCGTCGGCAGATGGAAGCCGCCAGG CGCGCTTTGAGCCTCAGTCAGCTGTCGGGAAGAACAGAAGGGAGGGCGGCCGGGCCCGGTGGTGCTCACCAGCCG ATCCCGGCTCCGTTCAATTATCCCTCGATAGCCAGGTCGAGGCCCGTCGACGACGATGCCGCCCATCGCCAGCGG CGCCCACCCGCAGCGCCGGCGCCTGACCGGCCGCCCAAGGAGAGCCTGGCGCCGTCAACGAGCCAGGACCCGTCG GTTTGTACCCCCAATGCCGATGGCCTGCTGCCAGCCGTTCCACGCAAACTGCCGCTGGAGGACCAAGCCGGACCT CCTCCGCCGGCCTCCTCCGCTCCTGCTAATCAACCCCCTTTACCGCCAAAGGGACTGCCCGTGGATGGACCGCCG CTCCCTAGGAGAGATCGGCTCACGTTTAAGCCCGGGGCGTACCTCGAGAACGGCGACCCGATCCGATCCGTCTTC ATCCCCAGCCAGCTACGGTCGGCCTTCCTCGACATGGCCGACGACAACACGCGGGCTGGTCTGGAAATGTGCGGC ATCATCTGCGGCATGCCGGTCAACAACGCCCTGTTCGTGCGCAGCTTGATCATTCCCGATCAGAGGTGCACGTCG GACACGTGCGAAACAGAAAACGAAGGTGCGATATTCGACTATTGCTCCAGCGAGGATTTGATTGTTCTGGGATGG ATCCACACGCACCCGACGCAGACGTGCTTCATGAGCTCTCGCGACTTGCACACGCACGCCGGCTACCAGGTCATG ATGCCAGAGAGCATCGCCATCGTCTGCGCTCCCAGATTCAAGCCATCATACGGAATCTTTCGCCTCACCCATCCT CCCGGCCTCGAACACATCCTGGACTGCAAACACCAGGATACCTTCCATCAGCATTCGATCGACAACATATATCGC GACTCGGAGCACCCGGGTGGCCACGTCTACGAAAGCGATACCTTGCCCTTTTACGTCAGGGACCTGCGAACGAAG CCGACATTTTAG |
| Gene | >Hirsu2|8593 ATGGAGCCGCGCTCGCCTCGTCCGCCGCCGCGGCCCTCGCGCCCGCCGACCATCAGCGCGCTGGTCGCCCAGGCC GAGAACTTCACCTTCAACGCAAACATCCCGTTCAAGCACTGGGTCAGAGCGGCCGAGACGCTGCATCAAGAGGTC CAGCACCGCCCCTCCCCGTCCTCGTCTCGGCATCGAGCCGCAGCTGACAGCCGCCTCAGGCCTCCTTCGCCATGT CCGACGGCGACTACGGCCGTGCCTACTGGCTGCTCTATCGCCACTCGAAACTCGTCCTCGAGCACATGCCCTCGC ACCCGCGCTACAGGGACCGTGACAGCCGCCTCATGTTTCGCTCCTTGTCCCGACGCATCGACAGCGTCCTCGACG AACTAGAGCGCCTCAAACCCGGCCTGGAAGACGAATATGAGAAATGGGAGCAGGCCAACGCGCGCCCCGCTCGAC AGCCGAGCACGCCAAGCGCACCGACGTCGCCAGCCAGCTACGCCGACTTTGCCGCACGCGACCCCAGCCTGTATG GCCCTGCCCGCGTGCTCGACGCCTCGGAGCACCGCGAGCTGGCCGTTGACTTGGCCCGGAAGGAGCTGGCGCGGA GAGATAGGGCCAAACGGGCGGCCAGGGCACAGCTTGCGCCACCTGCTTCGCCGACGAGCGGCCACGCCGCCCACC GAGACGGTAGATCCCTAGACGCCCATGAAGATGACTTTCGTCGGCAGATGGAAGCCGCCAGGCGCGCTTTGAGCC TCAGTCAGCTGTCGGGAAGAACAGAAGGGAGGGCGGCCGGGCCCGGTGGTGCTCACCAGCCGATCCCGGCTCCGT TCAATTATCCCTCGATAGCCAGGTCGAGGCCCGTCGACGACGATGCCGCCCATCGCCAGCGGCGCCCACCCGCAG CGCCGGCGCCTGACCGGCCGCCCAAGGAGAGCCTGGCGCCGTCAACGAGCCAGGACCCGTCGGTTTGTACCCCCA ATGCCGATGGCCTGCTGCCAGCCGTTCCACGCAAACTGCCGCTGGAGGACCAAGCCGGACCTCCTCCGCCGGCCT CCTCCGCTCCTGCTAATCAACCCCCTTTACCGCCAAAGGGACTGCCCGTGGATGGACCGCCGCTCCCTAGGAGAG ATCGGCTCACGTTTAAGCCCGGGGCGTACCTCGAGAACGGCGACCCGATCCGATCCGTCTTCATCCCCAGCCAGC TACGGTCGGCCTTCCTCGACATGGCCGACGACAACACGCGGGCTGGTCTGGAAATGTGCGGCATCATCTGCGGCA TGCCGGTCAACAACGCCCTGTTCGTGCGCAGCTTGATCATTCCCGATCAGAGGTGCACGTCGGACACGTGCGAAA CAGAAAACGAAGGTGCGATATTCGACTATTGCTCCAGCGAGGATTTGATTGTTCTGGGATGGATCCACACGCACC CGACGCAGACGTGCTTCATGAGCTCTCGCGACTTGCACACGCACGCCGGCTACCAGGTCATGATGCCAGAGAGCA TCGCCATCGTCTGCGCTCCCAGATTCAAGCCATCGTGCGTGTTGATCCCGTGTTTGCCGCATGGCGCGGCGATGC CGTCCCGTGACGCCGTCCCGTACTGACCGCGCACAGATACGGAATCTTTCGCCTCACCCATCCTCCCGGCCTCGA ACACATCCTGGACTGCAAACACCAGGATACCTTCCATCAGCATTCGATCGACAACATATATCGCGACTCGGAGCA CCCGGGTGGCCACGTCTACGAAAGCGATACCTTGCCCTTTTACGTCAGGGACCTGCGAACGAAGCCGACATTTTA G |