© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|8587 |
| Gene name | |
| Location | Contig_57:42360..43202 |
| Strand | - |
| Gene length (bp) | 842 |
| Transcript length (bp) | 465 |
| Coding sequence length (bp) | 465 |
| Protein length (aa) | 155 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.0708 | 0.0615 | 0.9684 | 0.0513 | 0.0496 | 0.0032 | 0.069 | 0.0541 | 0.0586 | 0.0027 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 20 | 0.999714 |
| Orthofinder run ID | 4 |
| Orthogroup | 6776 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|8587 MVAYNFLLTLLAAAVAIASPAPMPNEDSPLEARAGQVYVCRSGAQNNGQVYGEIRQDRAIGYFRDAKTHQGQSGY PKPFDNKGKVMKFPKGCGKDVWELPVLANGRPYAYKDKKGNNNRPGPIRVYYTKGLKFCAIGGKLNPDGTGNPHN CVLR* |
| Coding | >Hirsu2|8587 ATGGTTGCCTACAACTTCCTCCTTACCTTGCTCGCCGCTGCCGTCGCTATCGCGAGCCCGGCACCTATGCCCAAC GAGGACTCGCCTCTCGAGGCTCGCGCCGGTCAGGTTTACGTTTGCAGGTCAGGTGCGCAGAACAACGGCCAGGTC TACGGCGAAATTCGCCAAGACAGAGCCATTGGTTACTTTCGCGACGCCAAAACCCACCAAGGGCAAAGCGGCTAC CCCAAGCCATTCGATAACAAGGGCAAGGTCATGAAGTTTCCCAAGGGCTGTGGCAAGGACGTCTGGGAGCTTCCC GTCCTTGCTAACGGCAGGCCTTATGCGTATAAGGACAAGAAGGGCAATAACAACAGACCTGGCCCCATACGCGTT TACTACACCAAGGGCCTTAAGTTCTGCGCTATCGGTGGCAAGCTAAACCCTGACGGCACTGGCAACCCTCACAAC TGCGTGCTCAGGTAG |
| Transcript | >Hirsu2|8587 ATGGTTGCCTACAACTTCCTCCTTACCTTGCTCGCCGCTGCCGTCGCTATCGCGAGCCCGGCACCTATGCCCAAC GAGGACTCGCCTCTCGAGGCTCGCGCCGGTCAGGTTTACGTTTGCAGGTCAGGTGCGCAGAACAACGGCCAGGTC TACGGCGAAATTCGCCAAGACAGAGCCATTGGTTACTTTCGCGACGCCAAAACCCACCAAGGGCAAAGCGGCTAC CCCAAGCCATTCGATAACAAGGGCAAGGTCATGAAGTTTCCCAAGGGCTGTGGCAAGGACGTCTGGGAGCTTCCC GTCCTTGCTAACGGCAGGCCTTATGCGTATAAGGACAAGAAGGGCAATAACAACAGACCTGGCCCCATACGCGTT TACTACACCAAGGGCCTTAAGTTCTGCGCTATCGGTGGCAAGCTAAACCCTGACGGCACTGGCAACCCTCACAAC TGCGTGCTCAGGTAG |
| Gene | >Hirsu2|8587 ATGGTTGCCTACAACTTCCTCCTTACCTTGCTCGCCGCTGCCGTCGCTATCGCGAGCCCGGCACCTATGCCCAAC GAGGACTCGCCTCTCGAGGCTCGCGCCGGTCAGGTACTGTGACATTCGAGCCCTTTTCTTCATTCTGAATCTGCA ACCATCATTTTTGGCACGATCTTCTTTTCTCTCGCGTTCGTGGCCCGACACCAATACCGCAAGGAATAGCCAATC AAGCAAGGAAAACACGCTGTTGGCAGAGGAAAGAGGAGGAGGAGTTGCAGAAATTGGCCTCTCATTGTGCCTGCC TCTGCGACTGATTCCGCTTTCCTCCCCTCTGCAACTGCTGCTGCTATGCCTTCAGTCGATGCCTCGGCCACCGTT GCGGTGTGGACACTGCGCTACGACGGCTGACACGAACAAAATTGGTTGTTAAGGAGTCACGTATATCGAATTTTC CCCTTGAACACCGGCTGACAAGCTCTCGGTTACAGGTTTACGTTTGCAGGTCAGGTGCGCAGAACAACGGCCAGG TCTACGGCGAAATTCGCCAAGACAGAGCCATTGGTTACTTTCGCGACGCCAAAACCCACCAAGGGCAAAGCGGCT ACCCCAAGCCATTCGATAACAAGGGCAAGGTCATGAAGTTTCCCAAGGGCTGTGGCAAGGACGTCTGGGAGCTTC CCGTCCTTGCTAACGGCAGGCCTTATGCGTATAAGGACAAGAAGGGCAATAACAACAGACCTGGCCCCATACGCG TTTACTACACCAAGGGCCTTAAGTTCTGCGCTATCGGTGGCAAGCTAAACCCTGACGGCACTGGCAACCCTCACA ACTGCGTGCTCAGGTAG |