Protein ID | Hirsu2|8585 |
Gene name | |
Location | Contig_57:38553..39805 |
Strand | + |
Gene length (bp) | 1252 |
Transcript length (bp) | 1098 |
Coding sequence length (bp) | 1098 |
Protein length (aa) | 366 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF10337 | ArAE_2_N | Putative ER transporter, 6TM, N-terminal | 4.8E-07 | 54 | 140 |
PF10337 | ArAE_2_N | Putative ER transporter, 6TM, N-terminal | 2.2E-18 | 148 | 346 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 27 | 0.45 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 111 | 133 | 22 |
2 | 153 | 170 | 17 |
3 | 177 | 199 | 22 |
4 | 209 | 231 | 22 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|8585 MAAEQPAERPASRQESPSDRSAAPKPGAKPSEKSFRGSTRRHQLRSILSQLKWDRHTVAMAIKTAIPPAVLVCAI QSDPFIHHFQTNAYLAAILSTIPPPALTRASQIQFNFWLALAIAIAYCWALLAGWSGLQARKHTTKDPSRIAEYN SSAEAVVAIFIIVWIWLVLTLKSARPSLGVQCTLAGIFSVASMPGAARAPTMPKVIAEVSVVVEAFLVGQAVGLV NALVVFPQSARRNFKKDVRACLDQLVVVMHAHRNCMEDLRLKRSSGGKGNEGSSSGSLLEEALQRFVNGVIKARG AVEPAEHEMSWGRFDWATLDHISTSLVDLIPATSGLSAMADVLQPAVEDYASANGSSGGDDDQPV* |
Coding | >Hirsu2|8585 ATGGCCGCCGAGCAGCCGGCCGAGCGCCCCGCCAGCCGCCAGGAATCTCCGTCGGATAGAAGCGCCGCGCCGAAG CCCGGTGCCAAGCCTTCCGAGAAATCTTTCCGGGGATCAACCCGGCGTCACCAGCTCCGGTCTATCCTTTCTCAG CTCAAATGGGACCGGCACACGGTTGCCATGGCCATCAAGACGGCAATCCCACCGGCCGTCCTGGTATGTGCCATA CAGTCGGATCCATTCATCCACCATTTCCAAACAAACGCCTACCTGGCCGCGATCCTGTCCACCATCCCCCCGCCC GCCCTCACTCGGGCGTCGCAGATCCAGTTCAACTTTTGGTTGGCCTTGGCCATTGCTATTGCGTACTGCTGGGCC CTCTTGGCGGGCTGGTCTGGTCTGCAGGCCAGGAAGCACACGACCAAGGATCCGAGCAGAATAGCTGAGTACAAT TCATCGGCCGAGGCCGTCGTCGCCATCTTCATCATCGTTTGGATATGGCTTGTCTTGACCCTGAAGTCGGCCCGG CCTTCCTTGGGCGTACAGTGCACTCTCGCCGGCATCTTCTCCGTCGCTTCGATGCCTGGGGCCGCCCGCGCTCCC ACCATGCCGAAAGTCATCGCCGAAGTTAGCGTCGTCGTCGAGGCCTTTCTCGTCGGCCAGGCTGTCGGATTGGTC AATGCCCTGGTCGTGTTCCCGCAGAGCGCCAGACGGAATTTCAAGAAGGATGTCCGGGCCTGTCTGGATCAGCTG GTGGTCGTCATGCATGCTCACAGGAACTGCATGGAGGACCTGAGGCTGAAGAGATCCTCTGGAGGGAAGGGAAAT GAGGGGAGCTCGTCTGGCAGCCTGCTAGAAGAGGCTCTGCAGCGCTTCGTCAACGGCGTCATCAAGGCACGCGGA GCGGTTGAGCCCGCGGAGCACGAGATGTCGTGGGGCCGGTTCGACTGGGCAACGCTCGACCACATATCCACCTCG CTGGTAGACCTTATCCCGGCGACTTCTGGCCTGAGCGCCATGGCAGACGTGCTACAGCCGGCTGTGGAAGACTAC GCCTCCGCCAACGGCTCCAGTGGCGGGGATGACGATCAACCCGTTTGA |
Transcript | >Hirsu2|8585 ATGGCCGCCGAGCAGCCGGCCGAGCGCCCCGCCAGCCGCCAGGAATCTCCGTCGGATAGAAGCGCCGCGCCGAAG CCCGGTGCCAAGCCTTCCGAGAAATCTTTCCGGGGATCAACCCGGCGTCACCAGCTCCGGTCTATCCTTTCTCAG CTCAAATGGGACCGGCACACGGTTGCCATGGCCATCAAGACGGCAATCCCACCGGCCGTCCTGGTATGTGCCATA CAGTCGGATCCATTCATCCACCATTTCCAAACAAACGCCTACCTGGCCGCGATCCTGTCCACCATCCCCCCGCCC GCCCTCACTCGGGCGTCGCAGATCCAGTTCAACTTTTGGTTGGCCTTGGCCATTGCTATTGCGTACTGCTGGGCC CTCTTGGCGGGCTGGTCTGGTCTGCAGGCCAGGAAGCACACGACCAAGGATCCGAGCAGAATAGCTGAGTACAAT TCATCGGCCGAGGCCGTCGTCGCCATCTTCATCATCGTTTGGATATGGCTTGTCTTGACCCTGAAGTCGGCCCGG CCTTCCTTGGGCGTACAGTGCACTCTCGCCGGCATCTTCTCCGTCGCTTCGATGCCTGGGGCCGCCCGCGCTCCC ACCATGCCGAAAGTCATCGCCGAAGTTAGCGTCGTCGTCGAGGCCTTTCTCGTCGGCCAGGCTGTCGGATTGGTC AATGCCCTGGTCGTGTTCCCGCAGAGCGCCAGACGGAATTTCAAGAAGGATGTCCGGGCCTGTCTGGATCAGCTG GTGGTCGTCATGCATGCTCACAGGAACTGCATGGAGGACCTGAGGCTGAAGAGATCCTCTGGAGGGAAGGGAAAT GAGGGGAGCTCGTCTGGCAGCCTGCTAGAAGAGGCTCTGCAGCGCTTCGTCAACGGCGTCATCAAGGCACGCGGA GCGGTTGAGCCCGCGGAGCACGAGATGTCGTGGGGCCGGTTCGACTGGGCAACGCTCGACCACATATCCACCTCG CTGGTAGACCTTATCCCGGCGACTTCTGGCCTGAGCGCCATGGCAGACGTGCTACAGCCGGCTGTGGAAGACTAC GCCTCCGCCAACGGCTCCAGTGGCGGGGATGACGATCAACCCGTTTGA |
Gene | >Hirsu2|8585 ATGGCCGCCGAGCAGCCGGCCGAGCGCCCCGCCAGCCGCCAGGAATCTCCGTCGGATAGAAGCGCCGCGCCGAAG CCCGGTGCCAAGCCTTCCGAGAAATCTTTCCGGGGATCAACCCGGCGTCACCAGCTCCGGTCTATCCTTTCTCAG CTCAAATGGGACCGGCACACGGTTGCCATGGCCATCAAGACGGCAATCCCACCGGCCGTCCTGGTATGTGCCATA CAGTCGGATCCATTCATCCACCATTTCCAAACAAACGCCTACCTGGCCGCGATCCTGTCCACCATCCCCCCGCCC GCCCTCACTCGGGCGTCGCAGATCCAGTTCAACTTTTGGTTGGCCTTGGCCATTGCTATTGCGTACTGCTGGGCC CTCTTGGCGGGCTGGTCTGGTCTGCAGGCCAGGAAGCACACGACCAAGGATCCGAGCAGAATAGCTGAGTACAAT TCATCGGCCGAGGCCGTCGTCGCCATCTTCATCATCGTTTGGATATGGCTTGTCTTGACCCTGAAGTCGGCCCGG CCTTCCTTGGGCGTACAGTGCACTCTCGCCGGCATCTTCTCCGTCGCTTCGATGCCTGGGGCCGCCCGCGCTCCC ACCATGCCGAAAGTCATCGCCGAAGTTAGCGTCGTCGTCGAGGCCTTTCTCGTCGGCCAGGCTGTCGGATTGGTC AATGCCCTGGTCGTGTTCCCGCAGAGCGCCAGACGGAATTTCAAGAAGGATGTCCGGGCCTGTCTGGATCAGCTG GTGGTCGTCATGCATGCTCACAGGAACTGCATGGAGGACCTGAGGCTGAAGAGATCCTCTGGAGGGAAGGGAAAT GAGGGGAGCTCGTCTGGCAGCCTGCTAGAAGAGGCTCTGCAGCGCTTCGTCAACGGCGTCATCAAGGCACGCGGA GCGGTTGAGCCCGCGGAGCACGAGATGTCGTGGGGCCGGTTCGACTGGGCAACGCTCGACCACATATCCACCTCG CTGGTAGACCTTATCCCGGCGACTTCTGGCCTGAGCGCCATGGCAGACGTGCTACAGCCGGCTGTGGAAGACTAC GCCTCCGCCAACGGCTCCAGTGGCGGGGATGACGATCGTGAAAGTGGCAGTGACCCAAAAGACGATGATCGCCGT CGTCTAGAGGCCACCGTCCATCGGCGCCTCGTTGGTGCATCCGGGGCGATTATCGAAGGAGTGGAGCATATTAAA ATTCGGCTGCAGGAGACCGACTGGCGCCCCCCGTTTGGAAGAACCCGTTTGA |