© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|8564 |
| Gene name | |
| Location | Contig_567:15898..16226 |
| Strand | - |
| Gene length (bp) | 328 |
| Transcript length (bp) | 246 |
| Coding sequence length (bp) | 246 |
| Protein length (aa) | 82 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03943 | TAP_C | TAP C-terminal domain | 9.3E-18 | 31 | 76 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9XVS7|NXF1_CAEEL | Nuclear RNA export factor 1 OS=Caenorhabditis elegans GN=nxf-1 PE=1 SV=1 | 29 | 77 | 5.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005634 | nucleus | Yes |
| GO:0051028 | mRNA transport | Yes |
| GO:0071705 | nitrogen compound transport | No |
| GO:0005575 | cellular_component | No |
| GO:0044424 | intracellular part | No |
| GO:0006810 | transport | No |
| GO:0051236 | establishment of RNA localization | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| GO:0043226 | organelle | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0015931 | nucleobase-containing compound transport | No |
| GO:0044464 | cell part | No |
| GO:0071702 | organic substance transport | No |
| GO:0008150 | biological_process | No |
| GO:0050658 | RNA transport | No |
| GO:0043229 | intracellular organelle | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0050657 | nucleic acid transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|8564 MLSLRAYSPLPNVFAPAANPAATANGQHQAMIAELAKQTGMVPEYCEMCLSQVEWQFDKALVIFNEKRAELPAEA FASAHS* |
| Coding | >Hirsu2|8564 ATGTTGTCGCTGAGGGCCTACAGCCCTCTGCCGAACGTCTTCGCACCGGCGGCGAATCCGGCGGCAACCGCGAAC GGCCAACATCAGGCCATGATTGCGGAGCTGGCGAAGCAGACAGGGATGGTGCCCGAGTACTGCGAGATGTGTCTG TCGCAGGTCGAGTGGCAGTTTGACAAGGCCCTTGTCATCTTCAACGAAAAGAGGGCTGAGCTGCCGGCCGAGGCC TTTGCCTCGGCGCACAGCTGA |
| Transcript | >Hirsu2|8564 ATGTTGTCGCTGAGGGCCTACAGCCCTCTGCCGAACGTCTTCGCACCGGCGGCGAATCCGGCGGCAACCGCGAAC GGCCAACATCAGGCCATGATTGCGGAGCTGGCGAAGCAGACAGGGATGGTGCCCGAGTACTGCGAGATGTGTCTG TCGCAGGTCGAGTGGCAGTTTGACAAGGCCCTTGTCATCTTCAACGAAAAGAGGGCTGAGCTGCCGGCCGAGGCC TTTGCCTCGGCGCACAGCTGA |
| Gene | >Hirsu2|8564 ATGTTGTCGCTGAGGGCCTACAGCCCTCTGCCGAACGTCTTCGCACCGGCGGCGAATCCGGCGGCAACCGCGAAC GGCCAACATCAGGCCATGATTGCGGAGCTGGCGAAGCAGACAGGGATGGTGCCCGAGTACTGCGAGATGTGTCTG TCGCAGGTCGAGTGGCAGTTTGACAAGGCCCTTGTCATCTTCAACGAAAAGAGGGTGTGTTGCCCCAGCCCCCTC CCCCCCTCTCCCCGCCCGTGTCACGGCTGGAGTTGAAGATTGCGCTGACGACAGGGAATAGGCTGAGCTGCCGGC CGAGGCCTTTGCCTCGGCGCACAGCTGA |