© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|8480 |
| Gene name | |
| Location | Contig_557:10133..10817 |
| Strand | + |
| Gene length (bp) | 684 |
| Transcript length (bp) | 327 |
| Coding sequence length (bp) | 327 |
| Protein length (aa) | 109 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF14765 | PS-DH | Polyketide synthase dehydratase | 3.9E-09 | 7 | 95 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.632 | 0.3459 | 0.3054 | 0.1033 | 0.2673 | 0.0558 | 0.1306 | 0.1832 | 0.2112 | 0.055 |
| Gene cluster ID | Type of secondary metabolism gene |
|---|---|
| Cluster 39 | (None) |
| Orthofinder run ID | 4 |
| Orthogroup | 1 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|8480 MRSGKVVWNEFTFYSKPGGEQVVEHASGLCRIVSHGDTPTATEETAVADLHGVDASSGAPPVDGVHASHSAHYSA WRNAGFDFGPTFRGLQGASVSRLGNGPSCNFES* |
| Coding | >Hirsu2|8480 ATGAGGTCAGGCAAGGTCGTTTGGAACGAATTCACCTTCTATAGCAAACCGGGCGGAGAACAGGTCGTCGAGCAT GCCTCGGGCCTGTGCAGGATCGTGAGCCACGGCGACACGCCGACAGCAACCGAAGAGACTGCTGTCGCCGACCTC CACGGTGTGGATGCCAGCTCTGGCGCGCCGCCCGTCGATGGCGTTCACGCCTCACACTCTGCTCACTACAGCGCT TGGCGCAACGCCGGCTTTGACTTCGGCCCTACCTTTCGTGGTCTCCAAGGCGCCTCGGTTTCCCGGCTCGGGAAT GGGCCATCGTGCAATTTCGAGAGCTGA |
| Transcript | >Hirsu2|8480 ATGAGGTCAGGCAAGGTCGTTTGGAACGAATTCACCTTCTATAGCAAACCGGGCGGAGAACAGGTCGTCGAGCAT GCCTCGGGCCTGTGCAGGATCGTGAGCCACGGCGACACGCCGACAGCAACCGAAGAGACTGCTGTCGCCGACCTC CACGGTGTGGATGCCAGCTCTGGCGCGCCGCCCGTCGATGGCGTTCACGCCTCACACTCTGCTCACTACAGCGCT TGGCGCAACGCCGGCTTTGACTTCGGCCCTACCTTTCGTGGTCTCCAAGGCGCCTCGGTTTCCCGGCTCGGGAAT GGGCCATCGTGCAATTTCGAGAGCTGA |
| Gene | >Hirsu2|8480 ATGAGGTCAGGCAAGGTCGTTTGGAACGAATTCACCTTCTATAGCAAACCGGGCGGAGAACAGGTCGTCGAGCAT GCCTCGGGCCTGTGCAGGATCGTGAGCCACGGCGACACGCCGACAGCAACCGAAGAGACTGCTGTCGCCGACCTC CACGGTGTGGATGCCAGCTCTGGCGCGCCGCCCGTCGATGGCGTTCACGCCTCACACTCTGCTCACTACAGCGCT TGGCGCAACGCCGGCTTTGACTTCGGTGAGCGGCTTCTGCTTACGGGACGAGCGCATAGGCCCCTTCTGACCCTT GTTTCCAATTTCCAGGCCCTACCTTTCGTGGTCTCCAAGGCGCCTCGGTTTCCCGGCTCGGGAATGGGCCATCGT GCAATTTCGAGGTTGGTATCCAAGATACCAAACTTCTGTCATCCAATCCCTTCGAAACCGACTACCTGATCCATC CTGGAACGTTGGACGCCTGCATTCAAGCCCTTTGGCATGTCTTTTTTGACAGTCCAGATTCGGCCTTTGTCCCGA CGGGGATAGCCAACGGGATTGTCCGGGTCGATGCTCTTCGCAAGGCCGGGTCAGTTCTCCGAGGAAATGTCGACT TCGTAGGCCGAAGCCGGAGACGTGCTTCGGCATCCGTCTTCGTCAGAAGCGCTGACTCGCCAGGGCCTCACGCCA TAGAGCTGA |