Protein ID | Hirsu2|8480 |
Gene name | |
Location | Contig_557:10133..10817 |
Strand | + |
Gene length (bp) | 684 |
Transcript length (bp) | 327 |
Coding sequence length (bp) | 327 |
Protein length (aa) | 109 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF14765 | PS-DH | Polyketide synthase dehydratase | 3.9E-09 | 7 | 95 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm | 0.632 | 0.3459 | 0.3054 | 0.1033 | 0.2673 | 0.0558 | 0.1306 | 0.1832 | 0.2112 | 0.055 |
Gene cluster ID | Type of secondary metabolism gene |
---|---|
Cluster 39 | (None) |
Orthofinder run ID | 4 |
Orthogroup | 1 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|8480 MRSGKVVWNEFTFYSKPGGEQVVEHASGLCRIVSHGDTPTATEETAVADLHGVDASSGAPPVDGVHASHSAHYSA WRNAGFDFGPTFRGLQGASVSRLGNGPSCNFES* |
Coding | >Hirsu2|8480 ATGAGGTCAGGCAAGGTCGTTTGGAACGAATTCACCTTCTATAGCAAACCGGGCGGAGAACAGGTCGTCGAGCAT GCCTCGGGCCTGTGCAGGATCGTGAGCCACGGCGACACGCCGACAGCAACCGAAGAGACTGCTGTCGCCGACCTC CACGGTGTGGATGCCAGCTCTGGCGCGCCGCCCGTCGATGGCGTTCACGCCTCACACTCTGCTCACTACAGCGCT TGGCGCAACGCCGGCTTTGACTTCGGCCCTACCTTTCGTGGTCTCCAAGGCGCCTCGGTTTCCCGGCTCGGGAAT GGGCCATCGTGCAATTTCGAGAGCTGA |
Transcript | >Hirsu2|8480 ATGAGGTCAGGCAAGGTCGTTTGGAACGAATTCACCTTCTATAGCAAACCGGGCGGAGAACAGGTCGTCGAGCAT GCCTCGGGCCTGTGCAGGATCGTGAGCCACGGCGACACGCCGACAGCAACCGAAGAGACTGCTGTCGCCGACCTC CACGGTGTGGATGCCAGCTCTGGCGCGCCGCCCGTCGATGGCGTTCACGCCTCACACTCTGCTCACTACAGCGCT TGGCGCAACGCCGGCTTTGACTTCGGCCCTACCTTTCGTGGTCTCCAAGGCGCCTCGGTTTCCCGGCTCGGGAAT GGGCCATCGTGCAATTTCGAGAGCTGA |
Gene | >Hirsu2|8480 ATGAGGTCAGGCAAGGTCGTTTGGAACGAATTCACCTTCTATAGCAAACCGGGCGGAGAACAGGTCGTCGAGCAT GCCTCGGGCCTGTGCAGGATCGTGAGCCACGGCGACACGCCGACAGCAACCGAAGAGACTGCTGTCGCCGACCTC CACGGTGTGGATGCCAGCTCTGGCGCGCCGCCCGTCGATGGCGTTCACGCCTCACACTCTGCTCACTACAGCGCT TGGCGCAACGCCGGCTTTGACTTCGGTGAGCGGCTTCTGCTTACGGGACGAGCGCATAGGCCCCTTCTGACCCTT GTTTCCAATTTCCAGGCCCTACCTTTCGTGGTCTCCAAGGCGCCTCGGTTTCCCGGCTCGGGAATGGGCCATCGT GCAATTTCGAGGTTGGTATCCAAGATACCAAACTTCTGTCATCCAATCCCTTCGAAACCGACTACCTGATCCATC CTGGAACGTTGGACGCCTGCATTCAAGCCCTTTGGCATGTCTTTTTTGACAGTCCAGATTCGGCCTTTGTCCCGA CGGGGATAGCCAACGGGATTGTCCGGGTCGATGCTCTTCGCAAGGCCGGGTCAGTTCTCCGAGGAAATGTCGACT TCGTAGGCCGAAGCCGGAGACGTGCTTCGGCATCCGTCTTCGTCAGAAGCGCTGACTCGCCAGGGCCTCACGCCA TAGAGCTGA |