Protein ID | Hirsu2|8476 |
Gene name | |
Location | Contig_557:729..2477 |
Strand | - |
Gene length (bp) | 1748 |
Transcript length (bp) | 1365 |
Coding sequence length (bp) | 1365 |
Protein length (aa) | 455 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF05730 | CFEM | CFEM domain | 1.6E-05 | 12 | 71 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 15 | 0.45 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 81 | 103 | 22 |
2 | 118 | 140 | 22 |
3 | 161 | 183 | 22 |
4 | 198 | 220 | 22 |
5 | 281 | 298 | 17 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|8476 MASPQEAGRPDLARLPSCALGCLTASCPISDLTCICRAGFHGVEEQRSRCIIHSCGFQSSLYIRNQTATACLAPV RDQAVYFNAMTAAVVSATGVAVAVRLGFKQFFGAGRRRLGVDDWFAALATLVGVPCIAILVFGLNRHGLGRDIWA LDDARDAAAFALYFYVMEILYLTVIALVRLTFTLFYLDIFPGRTTRRLLWATVAFHVVVAVAFVAKVVFQCAPVS YSWTKFLDGPRPAGRCIHINPSSWANAALGVAADLWLLAIPLTQLRRLQLHWKKKVGAGLMFAAGAIGTIVSILR LRSIVNFANSTNPTWEQYDIVVWSSIEVQVGLTCSCLPTIRLVLVRLWPRIFGVGSQIRSRSNGSQPVEARPGGS RQRAEPDTMGEPSPSPPARVYYSKPDPAEVPAAPGPGPPPPLRDDGCDDGLVELWSRQRQQMADNRRHGRIFELA PHAI* |
Coding | >Hirsu2|8476 ATGGCCTCGCCGCAAGAAGCAGGCCGGCCCGACCTGGCCAGGCTTCCTTCGTGTGCCCTCGGCTGCCTGACGGCG TCTTGTCCCATCTCGGACCTGACATGCATATGCCGCGCCGGCTTCCACGGCGTGGAGGAGCAGAGGAGCAGATGC ATCATCCACTCCTGCGGCTTCCAGTCTTCGCTCTACATCCGGAACCAGACGGCGACGGCGTGCCTGGCGCCGGTG CGGGACCAGGCCGTCTACTTCAACGCGATGACGGCGGCGGTGGTGTCGGCGACGGGCGTCGCGGTCGCGGTCCGG CTCGGCTTCAAGCAGTTCTTCGGCGCCGGGCGGCGGCGGCTGGGCGTCGACGACTGGTTCGCGGCGCTGGCGACG CTCGTCGGCGTGCCCTGCATCGCCATCCTCGTCTTCGGCCTCAACCGGCACGGGCTGGGGCGCGACATCTGGGCG CTCGACGACGCGCGCGACGCCGCCGCCTTCGCCCTCTACTTCTACGTCATGGAGATACTGTACCTGACCGTCATC GCCCTCGTCCGCCTCACCTTCACCCTCTTCTACCTCGACATCTTCCCCGGCCGGACGACGCGCCGGCTGCTCTGG GCCACCGTCGCCTTCCACGTCGTCGTCGCCGTCGCCTTCGTCGCAAAGGTCGTCTTCCAGTGCGCGCCCGTCAGC TACAGCTGGACCAAGTTCCTCGACGGGCCGCGGCCCGCCGGCCGCTGCATCCACATCAACCCGTCCAGCTGGGCC AACGCGGCGCTCGGCGTCGCCGCCGACCTGTGGCTGCTGGCCATTCCGCTGACGCAGCTGCGGAGGCTGCAGCTT CACTGGAAGAAGAAGGTCGGGGCCGGCTTGATGTTTGCGGCCGGCGCCATCGGCACCATCGTCTCCATCCTCCGG CTGCGGTCCATCGTCAACTTCGCCAACTCGACGAACCCGACGTGGGAGCAGTACGACATCGTCGTCTGGTCCTCC ATCGAGGTCCAGGTCGGCCTGACGTGTTCCTGCCTGCCCACCATCCGCCTCGTCCTCGTCCGGCTGTGGCCGCGC ATCTTCGGCGTCGGCTCGCAGATCCGGTCCCGGTCCAACGGCTCGCAGCCGGTCGAGGCGAGGCCGGGCGGCAGC CGGCAGCGCGCCGAGCCGGACACGATGGGCGAGCCGAGTCCGAGCCCGCCGGCCCGCGTCTACTACAGCAAGCCC GACCCGGCCGAGGTCCCGGCGGCCCCGGGCCCGGGCCCGCCGCCGCCGCTGCGGGACGACGGCTGCGACGACGGC CTTGTGGAGCTGTGGAGCAGGCAGAGGCAGCAGATGGCCGACAACCGGAGACACGGCCGGATCTTCGAGCTCGCG CCGCACGCCATATAG |
Transcript | >Hirsu2|8476 ATGGCCTCGCCGCAAGAAGCAGGCCGGCCCGACCTGGCCAGGCTTCCTTCGTGTGCCCTCGGCTGCCTGACGGCG TCTTGTCCCATCTCGGACCTGACATGCATATGCCGCGCCGGCTTCCACGGCGTGGAGGAGCAGAGGAGCAGATGC ATCATCCACTCCTGCGGCTTCCAGTCTTCGCTCTACATCCGGAACCAGACGGCGACGGCGTGCCTGGCGCCGGTG CGGGACCAGGCCGTCTACTTCAACGCGATGACGGCGGCGGTGGTGTCGGCGACGGGCGTCGCGGTCGCGGTCCGG CTCGGCTTCAAGCAGTTCTTCGGCGCCGGGCGGCGGCGGCTGGGCGTCGACGACTGGTTCGCGGCGCTGGCGACG CTCGTCGGCGTGCCCTGCATCGCCATCCTCGTCTTCGGCCTCAACCGGCACGGGCTGGGGCGCGACATCTGGGCG CTCGACGACGCGCGCGACGCCGCCGCCTTCGCCCTCTACTTCTACGTCATGGAGATACTGTACCTGACCGTCATC GCCCTCGTCCGCCTCACCTTCACCCTCTTCTACCTCGACATCTTCCCCGGCCGGACGACGCGCCGGCTGCTCTGG GCCACCGTCGCCTTCCACGTCGTCGTCGCCGTCGCCTTCGTCGCAAAGGTCGTCTTCCAGTGCGCGCCCGTCAGC TACAGCTGGACCAAGTTCCTCGACGGGCCGCGGCCCGCCGGCCGCTGCATCCACATCAACCCGTCCAGCTGGGCC AACGCGGCGCTCGGCGTCGCCGCCGACCTGTGGCTGCTGGCCATTCCGCTGACGCAGCTGCGGAGGCTGCAGCTT CACTGGAAGAAGAAGGTCGGGGCCGGCTTGATGTTTGCGGCCGGCGCCATCGGCACCATCGTCTCCATCCTCCGG CTGCGGTCCATCGTCAACTTCGCCAACTCGACGAACCCGACGTGGGAGCAGTACGACATCGTCGTCTGGTCCTCC ATCGAGGTCCAGGTCGGCCTGACGTGTTCCTGCCTGCCCACCATCCGCCTCGTCCTCGTCCGGCTGTGGCCGCGC ATCTTCGGCGTCGGCTCGCAGATCCGGTCCCGGTCCAACGGCTCGCAGCCGGTCGAGGCGAGGCCGGGCGGCAGC CGGCAGCGCGCCGAGCCGGACACGATGGGCGAGCCGAGTCCGAGCCCGCCGGCCCGCGTCTACTACAGCAAGCCC GACCCGGCCGAGGTCCCGGCGGCCCCGGGCCCGGGCCCGCCGCCGCCGCTGCGGGACGACGGCTGCGACGACGGC CTTGTGGAGCTGTGGAGCAGGCAGAGGCAGCAGATGGCCGACAACCGGAGACACGGCCGGATCTTCGAGCTCGCG CCGCACGCCATATAG |
Gene | >Hirsu2|8476 ATGGCCTCGCCGCAAGAAGCAGGCCGGCCCGACCTGGCCAGGCTTCCTTCGTGTGCCGTGAGTTTTTTTTCTTTT TCGTCCTCGTCCTCGTCCTCGTCCTCCTGCACCTCCTCCTTGCTTCTCATGATCTCTCTGGCTCGCTTCTTTCTG CTAACGCGCGGTCGACGCGGCACGCACAGCTCGGCTGCCTGACGGCGTCTTGTCCCATCTCGGACCTGACATGCA TATGCCGCGCCGGCTTCCACGGCGTGGAGGAGCAGAGGAGCAGATGCATCATCCACTCCTGCGGCTTCCAGTCTT CGCTCTGTGCGTAACAAACCAGCCCGGGCCCCGATCCGAATCCCGATCGAGAGGGAGAAGGCACGAAGAGACAGG GGGGGGGGACAGACAGAGCGGAAGAGACTGACCGGAGGCGCGGACGGAGCAGACATCCGGAACCAGACGGCGACG GCGTGCCTGGCGCCGGTGCGGGACCAGGCCGTCTACTTCAACGCGATGACGGCGGCGGTGGTGTCGGCGACGGGC GTCGCGGTCGCGGTCCGGCTCGGCTTCAAGCAGTTCTTCGGCGCCGGGCGGCGGCGGCTGGGCGTCGACGACTGG TTCGCGGCGCTGGCGACGCTCGTCGGCGTGCCCTGCATCGCCATCCTCGTCTTCGGCCTCAACCGGCACGGGCTG GGGCGCGACATCTGGGCGCTCGACGACGCGCGCGACGCCGCCGCCTTCGCCCTCTACTTCTACGTCATGGAGATA CTGTACCTGACCGTCATCGCCCTCGTCCGCCTCACCTTCACCCTCTTCTACCTCGACATCTTCCCCGGCCGGACG ACGCGCCGGCTGCTCTGGGCCACCGTCGCCTTCCACGTCGTCGTCGCCGTCGCCTTCGTCGCAAAGGTCGTCTTC CAGTGCGCGCCCGTCAGCTACAGCTGGACCAAGTTCCTCGACGGGCCGCGGCCCGCCGGCCGCTGCATCCACATC AACCCGTCCAGCTGGGCCAACGCGGCGCTCGGCGTCGCCGCCGACCTGTGGCTGCTGGCCATTCCGCTGACGCAG CTGCGGAGGCTGCAGCTTCACTGGAAGAAGAAGGTCGGGGCCGGCTTGATGTTTGCGGCCGGCGCCATGTGAGTC GAGCGTCTCCCCCCTTTTCTCTGTGTCACTCTCCCCTGCTCCGCCTCCATCTCCCCTCCTCTCTTCTTCTTCTCC AATGTAGCATCATGAAGAAAGGGGGTGCTGACCGAGGCGCGTCTCCTCTCCTCTTCAGCGGCACCATCGTCTCCA TCCTCCGGCTGCGGTCCATCGTCAACTTCGCCAACTCGACGAACCCGACGTGGGAGCAGTACGACATCGTCGTCT GGTCCTCCATCGAGGTCCAGGTCGGCCTGACGTGTTCCTGCCTGCCCACCATCCGCCTCGTCCTCGTCCGGCTGT GGCCGCGCATCTTCGGCGTCGGCTCGCAGATCCGGTCCCGGTCCAACGGCTCGCAGCCGGTCGAGGCGAGGCCGG GCGGCAGCCGGCAGCGCGCCGAGCCGGACACGATGGGCGAGCCGAGTCCGAGCCCGCCGGCCCGCGTCTACTACA GCAAGCCCGACCCGGCCGAGGTCCCGGCGGCCCCGGGCCCGGGCCCGCCGCCGCCGCTGCGGGACGACGGCTGCG ACGACGGCCTTGTGGAGCTGTGGAGCAGGCAGAGGCAGCAGATGGCCGACAACCGGAGACACGGCCGGATCTTCG AGCTCGCGCCGCACGCCATATAG |