Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|8427
Gene name
LocationContig_55:15046..15292
Strand-
Gene length (bp)246
Transcript length (bp)246
Coding sequence length (bp)246
Protein length (aa) 82

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm 0.6414 0.4941 0.5255 0.1623 0.3143 0.0418 0.208 0.0677 0.1457 0.0048

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup7084
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|6348
Ophiocordyceps subramaniannii Hirsu2|79
Ophiocordyceps subramaniannii Hirsu2|8427 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|8427
MGDAANETETGKPNGFPKARDPAVSVTHAAEKLIANQMEIQQAKLAVFRAFCAAFDQTAARFTSGRSLRFANDFS
RDFLSY*
Coding >Hirsu2|8427
ATGGGAGACGCAGCAAACGAAACCGAGACTGGCAAACCAAATGGCTTTCCCAAGGCTCGAGACCCAGCAGTTAGT
GTTACACACGCGGCAGAAAAACTCATCGCCAACCAGATGGAAATACAGCAGGCCAAGCTGGCCGTGTTCCGCGCC
TTCTGCGCGGCCTTTGACCAAACGGCCGCCCGATTCACGTCGGGTCGTTCGCTCCGCTTCGCCAACGACTTTTCA
CGCGACTTTCTTAGCTACTAG
Transcript >Hirsu2|8427
ATGGGAGACGCAGCAAACGAAACCGAGACTGGCAAACCAAATGGCTTTCCCAAGGCTCGAGACCCAGCAGTTAGT
GTTACACACGCGGCAGAAAAACTCATCGCCAACCAGATGGAAATACAGCAGGCCAAGCTGGCCGTGTTCCGCGCC
TTCTGCGCGGCCTTTGACCAAACGGCCGCCCGATTCACGTCGGGTCGTTCGCTCCGCTTCGCCAACGACTTTTCA
CGCGACTTTCTTAGCTACTAG
Gene >Hirsu2|8427
ATGGGAGACGCAGCAAACGAAACCGAGACTGGCAAACCAAATGGCTTTCCCAAGGCTCGAGACCCAGCAGTTAGT
GTTACACACGCGGCAGAAAAACTCATCGCCAACCAGATGGAAATACAGCAGGCCAAGCTGGCCGTGTTCCGCGCC
TTCTGCGCGGCCTTTGACCAAACGGCCGCCCGATTCACGTCGGGTCGTTCGCTCCGCTTCGCCAACGACTTTTCA
CGCGACTTTCTTAGCTACTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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