Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|8426
Gene name
LocationContig_55:10844..12708
Strand-
Gene length (bp)1864
Transcript length (bp)1698
Coding sequence length (bp)1698
Protein length (aa) 566

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04146 YTH YT521-B-like domain 1.8E-59 349 542

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q0DA50|C3H45_ORYSJ Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica GN=Os06g0677700 PE=3 SV=1 350 412 3.0E-12
sp|A9LNK9|CPSF_ARATH 30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1 348 412 2.0E-11
sp|B2RR83|YTDC2_MOUSE Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2 PE=1 SV=1 468 552 5.0E-11
sp|Q5R746|YTDC2_PONAB YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2 PE=2 SV=1 468 548 1.0E-10
sp|Q9H6S0|YTDC2_HUMAN Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2 PE=1 SV=2 468 548 3.0E-10
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Swissprot ID Swissprot Description Start End E-value
sp|Q0DA50|C3H45_ORYSJ Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica GN=Os06g0677700 PE=3 SV=1 350 412 3.0E-12
sp|A9LNK9|CPSF_ARATH 30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1 348 412 2.0E-11
sp|B2RR83|YTDC2_MOUSE Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2 PE=1 SV=1 468 552 5.0E-11
sp|Q5R746|YTDC2_PONAB YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2 PE=2 SV=1 468 548 1.0E-10
sp|Q9H6S0|YTDC2_HUMAN Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2 PE=1 SV=2 468 548 3.0E-10
sp|A9LNK9|CPSF_ARATH 30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1 482 541 1.0E-09
sp|Q9QY02|YTDC1_RAT YTH domain-containing protein 1 OS=Rattus norvegicus GN=Ythdc1 PE=1 SV=2 302 411 1.0E-08
sp|Q96MU7|YTDC1_HUMAN YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1 PE=1 SV=3 302 411 1.0E-08
sp|E9Q5K9|YTDC1_MOUSE YTH domain-containing protein 1 OS=Mus musculus GN=Ythdc1 PE=1 SV=2 302 411 1.0E-08
sp|Q5R746|YTDC2_PONAB YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2 PE=2 SV=1 350 421 2.0E-08
sp|B2RR83|YTDC2_MOUSE Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2 PE=1 SV=1 350 421 5.0E-08
sp|Q9H6S0|YTDC2_HUMAN Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2 PE=1 SV=2 350 421 7.0E-08
sp|Q0DA50|C3H45_ORYSJ Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica GN=Os06g0677700 PE=3 SV=1 484 541 1.0E-07
sp|Q9QY02|YTDC1_RAT YTH domain-containing protein 1 OS=Rattus norvegicus GN=Ythdc1 PE=1 SV=2 486 541 5.0E-07
sp|Q96MU7|YTDC1_HUMAN YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1 PE=1 SV=3 486 541 5.0E-07
sp|E9Q5K9|YTDC1_MOUSE YTH domain-containing protein 1 OS=Mus musculus GN=Ythdc1 PE=1 SV=2 486 541 5.0E-07
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear localization signal 0.7059 0.5302 0.0644 0.0211 0.0528 0.0089 0.1385 0.0624 0.1527 0.0153

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup407
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|7438
Ophiocordyceps australis map64 (Brazil) OphauB2|7806
Ophiocordyceps camponoti-floridani Ophcf2|07380
Ophiocordyceps camponoti-rufipedis Ophun1|3210
Ophiocordyceps kimflemingae Ophio5|5140
Ophiocordyceps subramaniannii Hirsu2|2237
Ophiocordyceps subramaniannii Hirsu2|7705
Ophiocordyceps subramaniannii Hirsu2|8182
Ophiocordyceps subramaniannii Hirsu2|8426 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|8426
MQKNAYGPPQPRGIASNAFSAPLVVASSGAFYYQQQSHGTSPMDNALLIVDYQSNQYSQPAQPYLPANSLPVIQQ
IPYNSAHGDPLPGMGQGFHAPQPQMPYYYTPGRISSGQGPMPTGQNLAYYPNQMINHHPQPGLYYAQANHIQSQN
IPLRPGQYVPSRPAILDAQKPRPLVDGSGMPASAQKQACQEALSNRQNKIRGPPRKARQSGHAIWIGNLPWQTDL
MILAHHICKETIGLESLFLISKSKCAFANFKDENTCLAAQRKLHNSKFQSMCLVSRLRRKNEEKGNGLAAAPGPA
TSHAGATAVYGGSAQHNPALRAHGLSLTGSQATKPKTSPCVKVSGQNDTFFILKSLTTEDLELSVQTGIWATQSH
NEEALNNALKSCNNVYLIFSANKSHEYFGYARMLSEVNEDPAAAIGLSLNSLDSPRVIPVDATEDVPKGRIFDDS
VRGTIFWEAEREDAVSKFDNMTEASTKSGGAEDGTKPLGKPFKLEWLSISRLPFYQTQGLRNPWNSNREVKVARD
GTELEPSVGHRLIGLFNCVQNGEPVSSAMQPRMPRIHSCV*
Coding >Hirsu2|8426
ATGCAAAAGAATGCTTACGGGCCTCCGCAACCACGGGGGATTGCGAGCAATGCGTTTTCCGCGCCGCTCGTCGTG
GCCTCTTCAGGCGCTTTTTACTACCAACAACAGTCCCATGGAACGAGCCCAATGGATAACGCTCTGCTCATTGTC
GACTACCAGTCCAACCAGTATTCGCAACCGGCACAACCATATCTCCCGGCTAACTCGCTCCCGGTTATCCAACAG
ATACCGTACAATTCTGCGCACGGGGACCCTCTCCCAGGCATGGGCCAAGGCTTCCATGCTCCTCAACCTCAGATG
CCCTATTACTACACGCCCGGCCGCATATCCTCCGGGCAAGGACCAATGCCTACCGGTCAGAATCTCGCGTACTAC
CCGAATCAGATGATAAATCATCACCCGCAACCTGGCCTGTACTACGCCCAGGCGAACCACATTCAATCGCAGAAC
ATACCGCTGAGGCCGGGCCAGTATGTGCCAAGTAGGCCTGCAATCCTTGATGCTCAAAAACCTCGCCCTCTGGTA
GACGGCTCGGGGATGCCAGCTTCAGCTCAAAAGCAAGCTTGTCAGGAAGCATTGAGCAACCGACAGAACAAGATT
CGAGGACCTCCACGGAAGGCTCGCCAAAGTGGACATGCCATCTGGATCGGGAATTTGCCTTGGCAGACCGACCTG
ATGATCCTAGCCCATCACATTTGCAAGGAGACCATTGGACTGGAGTCCCTGTTCCTTATCTCGAAAAGCAAATGT
GCCTTTGCAAATTTTAAAGACGAAAACACTTGCCTGGCGGCCCAACGGAAACTGCACAATTCCAAGTTCCAGTCC
ATGTGTCTCGTCAGTCGCCTGCGAAGGAAGAACGAGGAAAAAGGCAATGGTTTGGCGGCAGCCCCCGGCCCGGCA
ACCAGCCACGCGGGCGCTACCGCGGTCTATGGCGGCTCAGCTCAACATAACCCCGCCTTGAGGGCCCATGGCCTA
AGCTTAACAGGCAGCCAGGCAACAAAGCCCAAGACGAGTCCCTGCGTCAAAGTGAGCGGCCAGAACGACACTTTT
TTCATCCTCAAGAGCCTTACGACGGAAGATCTCGAACTGAGCGTGCAGACTGGGATCTGGGCCACGCAGTCACAC
AACGAAGAGGCGCTCAACAATGCCTTGAAGAGCTGTAACAACGTGTATTTAATTTTTTCGGCCAACAAATCGCAC
GAATACTTTGGGTACGCCCGCATGCTATCAGAGGTCAATGAAGATCCGGCGGCGGCGATAGGACTTTCGCTGAAC
TCCCTTGACTCACCACGGGTGATTCCTGTCGACGCAACAGAAGATGTCCCCAAGGGCAGGATCTTTGATGACTCT
GTCAGAGGAACAATCTTCTGGGAAGCAGAACGAGAGGATGCGGTGAGTAAATTCGATAACATGACTGAGGCCTCC
ACGAAGAGCGGTGGGGCCGAGGACGGAACGAAACCTTTGGGGAAACCGTTTAAGCTTGAATGGCTGTCGATCAGT
CGGCTGCCTTTCTATCAGACCCAAGGATTAAGAAACCCATGGAATTCAAATAGGGAGGTCAAGGTCGCAAGAGAC
GGAACTGAGCTGGAACCCTCGGTCGGCCACAGACTTATTGGACTCTTCAACTGCGTGCAGAATGGCGAGCCTGTA
TCATCGGCGATGCAGCCGCGCATGCCCCGGATACACAGCTGTGTATAG
Transcript >Hirsu2|8426
ATGCAAAAGAATGCTTACGGGCCTCCGCAACCACGGGGGATTGCGAGCAATGCGTTTTCCGCGCCGCTCGTCGTG
GCCTCTTCAGGCGCTTTTTACTACCAACAACAGTCCCATGGAACGAGCCCAATGGATAACGCTCTGCTCATTGTC
GACTACCAGTCCAACCAGTATTCGCAACCGGCACAACCATATCTCCCGGCTAACTCGCTCCCGGTTATCCAACAG
ATACCGTACAATTCTGCGCACGGGGACCCTCTCCCAGGCATGGGCCAAGGCTTCCATGCTCCTCAACCTCAGATG
CCCTATTACTACACGCCCGGCCGCATATCCTCCGGGCAAGGACCAATGCCTACCGGTCAGAATCTCGCGTACTAC
CCGAATCAGATGATAAATCATCACCCGCAACCTGGCCTGTACTACGCCCAGGCGAACCACATTCAATCGCAGAAC
ATACCGCTGAGGCCGGGCCAGTATGTGCCAAGTAGGCCTGCAATCCTTGATGCTCAAAAACCTCGCCCTCTGGTA
GACGGCTCGGGGATGCCAGCTTCAGCTCAAAAGCAAGCTTGTCAGGAAGCATTGAGCAACCGACAGAACAAGATT
CGAGGACCTCCACGGAAGGCTCGCCAAAGTGGACATGCCATCTGGATCGGGAATTTGCCTTGGCAGACCGACCTG
ATGATCCTAGCCCATCACATTTGCAAGGAGACCATTGGACTGGAGTCCCTGTTCCTTATCTCGAAAAGCAAATGT
GCCTTTGCAAATTTTAAAGACGAAAACACTTGCCTGGCGGCCCAACGGAAACTGCACAATTCCAAGTTCCAGTCC
ATGTGTCTCGTCAGTCGCCTGCGAAGGAAGAACGAGGAAAAAGGCAATGGTTTGGCGGCAGCCCCCGGCCCGGCA
ACCAGCCACGCGGGCGCTACCGCGGTCTATGGCGGCTCAGCTCAACATAACCCCGCCTTGAGGGCCCATGGCCTA
AGCTTAACAGGCAGCCAGGCAACAAAGCCCAAGACGAGTCCCTGCGTCAAAGTGAGCGGCCAGAACGACACTTTT
TTCATCCTCAAGAGCCTTACGACGGAAGATCTCGAACTGAGCGTGCAGACTGGGATCTGGGCCACGCAGTCACAC
AACGAAGAGGCGCTCAACAATGCCTTGAAGAGCTGTAACAACGTGTATTTAATTTTTTCGGCCAACAAATCGCAC
GAATACTTTGGGTACGCCCGCATGCTATCAGAGGTCAATGAAGATCCGGCGGCGGCGATAGGACTTTCGCTGAAC
TCCCTTGACTCACCACGGGTGATTCCTGTCGACGCAACAGAAGATGTCCCCAAGGGCAGGATCTTTGATGACTCT
GTCAGAGGAACAATCTTCTGGGAAGCAGAACGAGAGGATGCGGTGAGTAAATTCGATAACATGACTGAGGCCTCC
ACGAAGAGCGGTGGGGCCGAGGACGGAACGAAACCTTTGGGGAAACCGTTTAAGCTTGAATGGCTGTCGATCAGT
CGGCTGCCTTTCTATCAGACCCAAGGATTAAGAAACCCATGGAATTCAAATAGGGAGGTCAAGGTCGCAAGAGAC
GGAACTGAGCTGGAACCCTCGGTCGGCCACAGACTTATTGGACTCTTCAACTGCGTGCAGAATGGCGAGCCTGTA
TCATCGGCGATGCAGCCGCGCATGCCCCGGATACACAGCTGTGTATAG
Gene >Hirsu2|8426
ATGCAAAAGAATGCTTACGGGCCTCCGCAACCACGGGGGATTGCGAGCAATGCGTTTTCCGCGCCGCTCGTCGTG
GCCTCTTCAGGCGCTTTTTACTACCAACAACAGTCCCATGGAACGAGCCCAATGGATAACGCTCTGCTCATTGTC
GACTACCAGTCCAACCAGTATTCGCAACCGGCACAACCATATCTCCCGGCTAACTCGCTCCCGGTTATCCAACAG
ATACCGTACAATTCTGCGCACGGGGACCCTCTCCCAGGCATGGGCCAAGGCTTCCATGCTCCTCAACCTCAGATG
CCCTATTACTACACGCCCGGCCGCATATCCTCCGGGCAAGGACCAATGCCTACCGGTCAGAATCTCGCGTACTAC
CCGAATCAGATGATAAATCATCACCCGCAACCTGGCCTGTACTACGCCCAGGCGAACCACATTCAATCGCAGAAC
ATACCGCTGAGGCCGGGCCAGTATGTGCCAAGTAGGCCTGCAATCCTTGATGCTCAAAAACCTCGCCCTCTGGTA
GACGGCTCGGGGATGCCAGCTTCAGCTCAAAAGCAAGCTTGTCAGGGTATGGACTCTAAGAGGGACTGCCAGGTG
ACTTCCCGCGGAGTCTGACATTACCGCAGAAGCATTGAGCAACCGACAGAACAAGATTCGAGGACCTCCACGGAA
GGCTCGCCAAAGTGGTAAGAAGACGCATTTTGCGGTTCAGGCTGATGCGGGTTGGGTGGCTGATCTTGTCCAGGA
CATGCCATCTGGATCGGGAATTTGCCTTGGCAGACCGACCTGATGATCCTAGCCCATCACATTTGCAAGGAGACC
ATTGGACTGGAGTCCCTGTTCCTTATCTCGAAAAGCAAATGTGCCTTTGCAAATTTTAAAGACGAAAACACTTGC
CTGGCGGCCCAACGGAAACTGCACAATTCCAAGTTCCAGTCCATGTGTCTCGTCAGTCGCCTGCGAAGGAAGAAC
GAGGAAAAAGGCAATGGTTTGGCGGCAGCCCCCGGCCCGGCAACCAGCCACGCGGGCGCTACCGCGGTCTATGGC
GGCTCAGCTCAACATAACCCCGCCTTGAGGGCCCATGGCCTAAGCTTAACAGGCAGCCAGGCAACAAAGCCCAAG
ACGAGTCCCTGCGTCAAAGTGAGCGGCCAGAACGACACTTTTTTCATCCTCAAGAGCCTTACGACGGAAGATCTC
GAACTGAGCGTGCAGACTGGGATCTGGGCCACGCAGTCACACAACGAAGAGGCGCTCAACAATGCCTTGAAGGTT
AGCAAACCCGAAGGGAGAGCTGTCCGCACGTAGCTAACTTGAAAAGAGCTGTAACAACGTGTATTTAATTTTTTC
GGCCAACAAATCGCACGAATACTTTGGGTACGCCCGCATGCTATCAGAGGTCAATGAAGATCCGGCGGCGGCGAT
AGGACTTTCGCTGAACTCCCTTGACTCACCACGGGTGATTCCTGTCGACGCAACAGAAGATGTCCCCAAGGGCAG
GATCTTTGATGACTCTGTCAGAGGAACAATCTTCTGGGAAGCAGAACGAGAGGATGCGGTGAGTAAATTCGATAA
CATGACTGAGGCCTCCACGAAGAGCGGTGGGGCCGAGGACGGAACGAAACCTTTGGGGAAACCGTTTAAGCTTGA
ATGGCTGTCGATCAGTCGGCTGCCTTTCTATCAGACCCAAGGATTAAGAAACCCATGGAATTCAAATAGGGAGGT
CAAGGTCGCAAGAGACGGAACTGAGCTGGAACCCTCGGTCGGCCACAGACTTATTGGACTCTTCAACTGCGTGCA
GAATGGCGAGCCTGTATCATCGGCGATGCAGCCGCGCATGCCCCGGATACACAGCTGTGTATAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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