© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|8411 |
| Gene name | |
| Location | Contig_548:6182..6652 |
| Strand | + |
| Gene length (bp) | 470 |
| Transcript length (bp) | 315 |
| Coding sequence length (bp) | 315 |
| Protein length (aa) | 105 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03647 | Tmemb_14 | Transmembrane proteins 14C | 1.7E-23 | 7 | 95 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P47131|YJ55_YEAST | TMEM14 protein homolog YJR085C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YJR085C PE=1 SV=1 | 3 | 102 | 2.0E-17 |
| sp|Q75JB5|TM14_DICDI | Transmembrane protein 14 homolog OS=Dictyostelium discoideum GN=DDB_G0271790 PE=3 SV=1 | 9 | 98 | 3.0E-15 |
| sp|Q9P7G3|YK45_SCHPO | TMEM14 protein homolog P14E8.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAP14E8.05c PE=3 SV=1 | 1 | 101 | 8.0E-11 |
| sp|Q0P436|TM14C_DANRE | Transmembrane protein 14C OS=Danio rerio GN=tmem14c PE=3 SV=1 | 1 | 82 | 1.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 24 | 17 |
| 2 | 29 | 48 | 19 |
| 3 | 55 | 77 | 22 |
| 4 | 81 | 100 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|8411 MQLDYSAYALAALTAGGGLMGYVRTRSTPSLVAGSAVGLLYGLGGYRLQNRQPYGIELGLLASVILGGSAIPRAI RLRKPVPIVLSVLSAFGMVTFGNAYRQNL* |
| Coding | >Hirsu2|8411 ATGCAGCTGGATTACTCGGCCTACGCGCTCGCGGCGCTGACGGCGGGAGGCGGCCTCATGGGCTACGTCAGGACG CGGTCCACGCCTTCGCTCGTGGCCGGCTCCGCCGTCGGCCTGCTCTATGGTCTGGGTGGCTACCGGCTGCAGAAC CGCCAGCCGTACGGCATCGAGCTGGGCCTGCTCGCCTCCGTCATCCTGGGTGGCTCCGCCATCCCGCGCGCCATC CGCCTCAGGAAGCCCGTCCCTATCGTCCTCAGCGTCTTGTCGGCCTTTGGTATGGTGACTTTCGGCAACGCGTAC CGACAGAATCTGTGA |
| Transcript | >Hirsu2|8411 ATGCAGCTGGATTACTCGGCCTACGCGCTCGCGGCGCTGACGGCGGGAGGCGGCCTCATGGGCTACGTCAGGACG CGGTCCACGCCTTCGCTCGTGGCCGGCTCCGCCGTCGGCCTGCTCTATGGTCTGGGTGGCTACCGGCTGCAGAAC CGCCAGCCGTACGGCATCGAGCTGGGCCTGCTCGCCTCCGTCATCCTGGGTGGCTCCGCCATCCCGCGCGCCATC CGCCTCAGGAAGCCCGTCCCTATCGTCCTCAGCGTCTTGTCGGCCTTTGGTATGGTGACTTTCGGCAACGCGTAC CGACAGAATCTGTGA |
| Gene | >Hirsu2|8411 ATGGTGCGTCTCGTCGCCACCCTCGCGGGCTGAGGGCACACAGGGCAGCGACGAGCTCGAGACTAACACGCAACG TCGCCATCGCAGCAGCTGGATTACTCGGCCTACGCGCTCGCGGCGCTGACGGCGGGAGGCGGCCTCATGGGCTAC GTCAGGACGCGGTCCACGCCTTCGCTCGTGGCCGGCTCCGCCGTCGGCCTGCTCTGTGCGTCTTTTCCCCTTGGC CGTCCACCCTTCCTGCCCAGCCAGCCTCTCATTACTGATGATGGCGTCCAGATGGTCTGGGTGGCTACCGGCTGC AGAACCGCCAGCCGTACGGCATCGAGCTGGGCCTGCTCGCCTCCGTCATCCTGGGTGGCTCCGCCATCCCGCGCG CCATCCGCCTCAGGAAGCCCGTCCCTATCGTCCTCAGCGTCTTGTCGGCCTTTGGTATGGTGACTTTCGGCAACG CGTACCGACAGAATCTGTGA |