Protein ID | Hirsu2|84 |
Gene name | |
Location | Contig_101:25018..26559 |
Strand | - |
Gene length (bp) | 1541 |
Transcript length (bp) | 1437 |
Coding sequence length (bp) | 1437 |
Protein length (aa) | 479 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF14529 | Exo_endo_phos_2 | Endonuclease-reverse transcriptase | 1.1E-21 | 48 | 173 |
GO Term | Description | Terminal node |
---|---|---|
GO:0003824 | catalytic activity | Yes |
GO:0003674 | molecular_function | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm|Nucleus | Nuclear localization signal | 0.5373 | 0.7772 | 0.536 | 0.078 | 0.0459 | 0.0201 | 0.1785 | 0.0217 | 0.0948 | 0.0012 |
Orthofinder run ID | 4 |
Orthogroup | 369 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|84 MIPSQTHETTRPIRSMLWVRADLEAEQVATNSADLTAAVLRLSDRDVMVVSVYVEGQSEEALLSAVRELHRLVEE FRSGARRRTDVLAGDFNRHDLLWGGDEITTRRQGEAQPIIDLMNDHGFCSLLPRGTKTWQGPDLESTIDLVLATA ELADEMVTCSIHPTEHGSDHRAIETTFDVTMPERRWKARLLFKNAPWAAIRARVSEDLERLPWHGDTQEQTDRLM AAVSDAVHGLTPRAKPSPNRSALQAIRQPRQQSGQCTIREIYDRIDYFQDRGCGVTLLWVPAKDEDFALGLLAKA AAQRATSPRCNAEPSTYQVRSTTLRLALASNQRFGRLPEGVGKYSRRIDKALPGKLTRALYDSLKRREAEALAQL RTGLTRLNSYLHRIGAVESDMCDCGQAAETIEHFLFRCKKWTTQPEIMVRYSRTKIGNLSFFLGGKAWYGNDRWK PDMQAVRAAIKFAMATKRLDADQQPSTN* |
Coding | >Hirsu2|84 ATGATACCGTCGCAGACGCATGAGACGACCCGGCCGATCCGGAGCATGCTGTGGGTGCGAGCCGACCTCGAGGCG GAACAAGTGGCAACGAACTCGGCGGATCTAACTGCAGCGGTGCTTCGACTTTCGGACCGAGATGTGATGGTAGTG TCGGTGTACGTGGAGGGGCAGAGTGAAGAGGCGCTGCTGAGTGCAGTACGAGAGCTGCATCGCTTGGTGGAGGAG TTCCGCAGCGGAGCAAGGCGGCGAACGGACGTCCTCGCAGGGGACTTCAATCGCCACGATCTGTTGTGGGGAGGT GACGAGATAACAACAAGAAGACAGGGGGAAGCGCAGCCGATCATCGACCTAATGAATGATCACGGCTTCTGCAGT CTCCTGCCTCGGGGCACGAAGACCTGGCAGGGCCCCGACTTGGAAAGCACGATCGACCTGGTGCTTGCAACGGCC GAGCTGGCAGACGAGATGGTGACATGCAGCATACACCCCACGGAGCACGGGTCGGACCACAGAGCGATTGAGACG ACCTTCGACGTGACCATGCCGGAGAGAAGGTGGAAAGCGAGACTCCTATTCAAAAACGCACCATGGGCGGCGATT AGGGCTAGAGTGAGCGAGGATTTGGAAAGGCTGCCTTGGCACGGCGATACGCAAGAGCAGACCGACCGGCTGATG GCGGCCGTCTCAGATGCGGTCCACGGGCTAACGCCCCGAGCGAAGCCGTCGCCCAACCGCTCGGCACTGCAAGCC ATCAGACAGCCACGCCAGCAGTCTGGCCAATGCACTATCCGAGAGATATATGACCGCATCGATTATTTCCAGGAT AGAGGATGTGGTGTCACGCTCTTGTGGGTGCCTGCGAAAGACGAAGACTTTGCTCTGGGCCTGTTGGCGAAGGCC GCAGCACAGAGAGCGACAAGTCCAAGATGCAATGCGGAACCATCGACGTACCAAGTGCGATCAACTACACTGCGC CTGGCACTCGCCAGCAACCAACGATTCGGACGACTCCCAGAAGGAGTTGGAAAATATTCGAGACGCATCGACAAG GCACTGCCGGGCAAGCTCACCCGCGCGCTATACGACTCGCTCAAGAGAAGGGAGGCGGAGGCGCTGGCGCAGCTC CGAACGGGCTTGACACGACTGAACAGCTACCTTCACAGAATAGGCGCAGTGGAATCGGACATGTGTGACTGTGGA CAAGCAGCAGAGACGATAGAGCACTTCCTATTTCGTTGCAAGAAGTGGACAACGCAACCCGAGATTATGGTGAGA TATTCACGGACAAAGATAGGGAATCTCTCGTTCTTTTTGGGCGGGAAAGCGTGGTATGGTAACGACAGGTGGAAG CCAGACATGCAGGCCGTTCGTGCGGCAATCAAGTTTGCGATGGCGACGAAGAGACTCGATGCGGACCAGCAGCCA TCGACGAACTGA |
Transcript | >Hirsu2|84 ATGATACCGTCGCAGACGCATGAGACGACCCGGCCGATCCGGAGCATGCTGTGGGTGCGAGCCGACCTCGAGGCG GAACAAGTGGCAACGAACTCGGCGGATCTAACTGCAGCGGTGCTTCGACTTTCGGACCGAGATGTGATGGTAGTG TCGGTGTACGTGGAGGGGCAGAGTGAAGAGGCGCTGCTGAGTGCAGTACGAGAGCTGCATCGCTTGGTGGAGGAG TTCCGCAGCGGAGCAAGGCGGCGAACGGACGTCCTCGCAGGGGACTTCAATCGCCACGATCTGTTGTGGGGAGGT GACGAGATAACAACAAGAAGACAGGGGGAAGCGCAGCCGATCATCGACCTAATGAATGATCACGGCTTCTGCAGT CTCCTGCCTCGGGGCACGAAGACCTGGCAGGGCCCCGACTTGGAAAGCACGATCGACCTGGTGCTTGCAACGGCC GAGCTGGCAGACGAGATGGTGACATGCAGCATACACCCCACGGAGCACGGGTCGGACCACAGAGCGATTGAGACG ACCTTCGACGTGACCATGCCGGAGAGAAGGTGGAAAGCGAGACTCCTATTCAAAAACGCACCATGGGCGGCGATT AGGGCTAGAGTGAGCGAGGATTTGGAAAGGCTGCCTTGGCACGGCGATACGCAAGAGCAGACCGACCGGCTGATG GCGGCCGTCTCAGATGCGGTCCACGGGCTAACGCCCCGAGCGAAGCCGTCGCCCAACCGCTCGGCACTGCAAGCC ATCAGACAGCCACGCCAGCAGTCTGGCCAATGCACTATCCGAGAGATATATGACCGCATCGATTATTTCCAGGAT AGAGGATGTGGTGTCACGCTCTTGTGGGTGCCTGCGAAAGACGAAGACTTTGCTCTGGGCCTGTTGGCGAAGGCC GCAGCACAGAGAGCGACAAGTCCAAGATGCAATGCGGAACCATCGACGTACCAAGTGCGATCAACTACACTGCGC CTGGCACTCGCCAGCAACCAACGATTCGGACGACTCCCAGAAGGAGTTGGAAAATATTCGAGACGCATCGACAAG GCACTGCCGGGCAAGCTCACCCGCGCGCTATACGACTCGCTCAAGAGAAGGGAGGCGGAGGCGCTGGCGCAGCTC CGAACGGGCTTGACACGACTGAACAGCTACCTTCACAGAATAGGCGCAGTGGAATCGGACATGTGTGACTGTGGA CAAGCAGCAGAGACGATAGAGCACTTCCTATTTCGTTGCAAGAAGTGGACAACGCAACCCGAGATTATGGTGAGA TATTCACGGACAAAGATAGGGAATCTCTCGTTCTTTTTGGGCGGGAAAGCGTGGTATGGTAACGACAGGTGGAAG CCAGACATGCAGGCCGTTCGTGCGGCAATCAAGTTTGCGATGGCGACGAAGAGACTCGATGCGGACCAGCAGCCA TCGACGAACTGA |
Gene | >Hirsu2|84 ATGATACCGTCGCAGACGCATGAGACGACCCGGCCGATCCGGAGCATGCTGTGGGTGCGAGCCGACCTCGAGGCG GAACAAGTGGCAACGAACTCGGCGGATCTAACTGCAGCGGTGCTTCGACTTTCGGACCGAGATGTGATGGTAGTG TCGGTGTACGTGGAGGGGCAGAGTGAAGAGGCGCTGCTGAGTGCAGTACGAGAGCTGCATCGCTTGGTGGAGGAG TTCCGCAGCGGAGCAAGGCGGCGAACGGACGTCCTCGCAGGGGACTTCAATCGCCACGATCTGTTGTGGGGAGGT GACGAGATAACAACAAGAAGACAGGGGGAAGCGCAGCCGATCATCGACCTAATGAATGATCACGGCTTCTGCAGT CTCCTGCCTCGGGGCACGAAGACCTGGCAGGGCCCCGACTTGGAAAGCACGATCGACCTGGTGCTTGCAACGGCC GAGCTGGCAGACGAGATGGTGACATGCAGCATACACCCCACGGAGCACGGGTCGGACCACAGAGCGATTGAGACG ACCTTCGACGTGACCATGCCGGAGAGAAGGTGGAAAGCGAGACTCCTATTCAAAAACGCACCATGGGCGGCGATT AGGGCTAGAGTGAGCGAGGATTTGGAAAGGCTGCCTTGGCACGGCGATACGCAAGAGCAGACCGACCGGCTGATG GCGGCCGTCTCAGATGCGGTCCACGGGCTAACGCCCCGAGCGAAGCCGTCGCCGTACGCAAACAGAACCCATACA CAGTAGAACTCGCAGCAGTCGCGATGGCGCTGAAGTGCATGCCGGCTGGACTGCATTGCCGAGACCTAACGATCA TTACCAGCAACCGCTCGGCACTGCAAGCCATCAGACAGCCACGCCAGCAGTCTGGCCAATGCACTATCCGAGAGA TATATGACCGCATCGATTATTTCCAGGATAGAGGATGTGGTGTCACGCTCTTGTGGGTGCCTGCGAAAGACGAAG ACTTTGCTCTGGGCCTGTTGGCGAAGGCCGCAGCACAGAGAGCGACAAGTCCAAGATGCAATGCGGAACCATCGA CGTACCAAGTGCGATCAACTACACTGCGCCTGGCACTCGCCAGCAACCAACGATTCGGACGACTCCCAGAAGGAG TTGGAAAATATTCGAGACGCATCGACAAGGCACTGCCGGGCAAGCTCACCCGCGCGCTATACGACTCGCTCAAGA GAAGGGAGGCGGAGGCGCTGGCGCAGCTCCGAACGGGCTTGACACGACTGAACAGCTACCTTCACAGAATAGGCG CAGTGGAATCGGACATGTGTGACTGTGGACAAGCAGCAGAGACGATAGAGCACTTCCTATTTCGTTGCAAGAAGT GGACAACGCAACCCGAGATTATGGTGAGATATTCACGGACAAAGATAGGGAATCTCTCGTTCTTTTTGGGCGGGA AAGCGTGGTATGGTAACGACAGGTGGAAGCCAGACATGCAGGCCGTTCGTGCGGCAATCAAGTTTGCGATGGCGA CGAAGAGACTCGATGCGGACCAGCAGCCATCGACGAACTGA |