© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|8377 |
| Gene name | |
| Location | Contig_542:5015..5310 |
| Strand | - |
| Gene length (bp) | 295 |
| Transcript length (bp) | 222 |
| Coding sequence length (bp) | 222 |
| Protein length (aa) | 74 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1068 | 0.0648 | 0.9645 | 0.0831 | 0.0631 | 0.0085 | 0.0953 | 0.0463 | 0.0757 | 0.0022 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 25 | 0.99967 |
| Orthofinder run ID | 4 |
| Orthogroup | 10611 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|8377 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|8377 MKPLTAIVFAATLCVTGLASPIKPRAAEPEAAAEPEAAAEPGASDKTLICTEGDKAKIIKLRYRNNVFSPHFP* |
| Coding | >Hirsu2|8377 ATGAAGCCCCTCACTGCCATTGTGTTCGCCGCGACCTTGTGCGTCACAGGTCTGGCCTCTCCCATCAAGCCCAGA GCTGCCGAGCCGGAGGCGGCTGCCGAGCCGGAGGCGGCTGCCGAGCCAGGGGCGAGCGATAAGACCTTGATTTGC ACCGAAGGAGACAAGGCCAAGATCATCAAGTTGCGTTATCGTAACAATGTTTTTTCGCCACATTTCCCATAG |
| Transcript | >Hirsu2|8377 ATGAAGCCCCTCACTGCCATTGTGTTCGCCGCGACCTTGTGCGTCACAGGTCTGGCCTCTCCCATCAAGCCCAGA GCTGCCGAGCCGGAGGCGGCTGCCGAGCCGGAGGCGGCTGCCGAGCCAGGGGCGAGCGATAAGACCTTGATTTGC ACCGAAGGAGACAAGGCCAAGATCATCAAGTTGCGTTATCGTAACAATGTTTTTTCGCCACATTTCCCATAG |
| Gene | >Hirsu2|8377 ATGAAGCCCCTCACTGCCATTGTGTTCGCCGCGACCTTGTGCGTCACAGGTCTGGCCTCTCCCATCAAGCCCAGA GCTGCCGAGCCGGAGGCGGCTGCCGAGCCGGAGGCGGCTGCCGAGCCAGGGGCGAGCGATAAGGTAAGTTATTCC CACTGGCCGTGTGAGTGGAATCAACTCAATCGCGTCGAGCTGACTTGGGCCCGGGTTCCAGACCTTGATTTGCAC CGAAGGAGACAAGGCCAAGATCATCAAGTTGCGTTATCGTAACAATGTTTTTTCGCCACATTTCCCATAG |