© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|8367 |
| Gene name | |
| Location | Contig_540:1830..3258 |
| Strand | - |
| Gene length (bp) | 1428 |
| Transcript length (bp) | 1428 |
| Coding sequence length (bp) | 1428 |
| Protein length (aa) | 476 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01062 | Bestrophin | Bestrophin, RFP-TM, chloride channel | 2.4E-43 | 72 | 390 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P72926|Y1024_SYNY3 | UPF0187 protein sll1024 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1024 PE=3 SV=2 | 74 | 398 | 6.0E-32 |
| sp|Q8YSU5|Y2987_NOSS1 | UPF0187 protein alr2987 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2987 PE=3 SV=1 | 66 | 403 | 2.0E-28 |
| sp|Q8ZPI0|YNEE_SALTY | UPF0187 protein YneE OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yneE PE=3 SV=2 | 74 | 397 | 2.0E-27 |
| sp|Q8Z706|YNEE_SALTI | UPF0187 protein YneE OS=Salmonella typhi GN=yneE PE=3 SV=2 | 74 | 397 | 2.0E-27 |
| sp|Q8XAZ3|YNEE_ECO57 | UPF0187 protein YneE OS=Escherichia coli O157:H7 GN=yneE PE=3 SV=2 | 79 | 397 | 7.0E-24 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P72926|Y1024_SYNY3 | UPF0187 protein sll1024 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1024 PE=3 SV=2 | 74 | 398 | 6.0E-32 |
| sp|Q8YSU5|Y2987_NOSS1 | UPF0187 protein alr2987 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2987 PE=3 SV=1 | 66 | 403 | 2.0E-28 |
| sp|Q8ZPI0|YNEE_SALTY | UPF0187 protein YneE OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yneE PE=3 SV=2 | 74 | 397 | 2.0E-27 |
| sp|Q8Z706|YNEE_SALTI | UPF0187 protein YneE OS=Salmonella typhi GN=yneE PE=3 SV=2 | 74 | 397 | 2.0E-27 |
| sp|Q8XAZ3|YNEE_ECO57 | UPF0187 protein YneE OS=Escherichia coli O157:H7 GN=yneE PE=3 SV=2 | 79 | 397 | 7.0E-24 |
| sp|P76146|YNEE_ECOLI | UPF0187 protein YneE OS=Escherichia coli (strain K12) GN=yneE PE=3 SV=2 | 79 | 397 | 7.0E-24 |
| sp|Q98E66|Y4386_RHILO | UPF0187 protein mll4386 OS=Rhizobium loti (strain MAFF303099) GN=mll4386 PE=3 SV=1 | 74 | 391 | 2.0E-17 |
| sp|Q8XTY1|Y3414_RALSO | UPF0187 protein RSc3414 OS=Ralstonia solanacearum (strain GMI1000) GN=RSc3414 PE=3 SV=1 | 297 | 393 | 6.0E-09 |
| sp|Q8XTY1|Y3414_RALSO | UPF0187 protein RSc3414 OS=Ralstonia solanacearum (strain GMI1000) GN=RSc3414 PE=3 SV=1 | 66 | 199 | 6.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005254 | chloride channel activity | Yes |
| GO:0015103 | inorganic anion transmembrane transporter activity | No |
| GO:0005253 | anion channel activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0015267 | channel activity | No |
| GO:0005216 | ion channel activity | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0008509 | anion transmembrane transporter activity | No |
| GO:0015108 | chloride transmembrane transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0022803 | passive transmembrane transporter activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 59 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 86 | 103 | 17 |
| 2 | 108 | 130 | 22 |
| 3 | 316 | 338 | 22 |
| 4 | 348 | 370 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|8367 MADGGDVIGELPQGSHQEARRVRSIEIPPLDKVCSPQSPVVPVAPQSFHRRGSFDLDDYFTGPRDIAKHSKWPLI LQLHGSIMPKLILPLLLISIWATAITVISAKVHYLGVQSVLITVTGFVVSLSLSFRSSTAYERYTEGRKYWATLV QASQILGRVFWIHATDRGSEFDAREVLLQKLSSMNLLVAFSLALKHSLRFEPYTAYPDLQNLIGHLDTFAKSATE AQGSISTAHKKKFFRGVGEYLGVSFAASNPRKAIKKASRPLGNLPLEILSHLAVTIDTLVANEQLRVPIHQTMAF NALQSLNDVMTGTERVLCTPLPIAYTIAISQSTYLYIALLPFQLIPLLQWTAIPATIAASWIILGLLFIGQEVEN PFGQDVNDLPLDSYCEQIAADLDIIASFDMRESRKFLTSSNNLPLYPVSTAPVSVWMQRSEEKLREAIKQKPVKT FEWRRWGTKHCSSSAATSVAGDHNV* |
| Coding | >Hirsu2|8367 ATGGCAGACGGCGGCGATGTCATTGGCGAGCTGCCCCAAGGCAGCCACCAAGAAGCCAGGCGCGTGCGAAGCATC GAGATACCACCGCTGGACAAAGTCTGTTCTCCGCAGTCGCCCGTCGTCCCTGTCGCTCCTCAATCGTTCCATCGA AGGGGCTCTTTCGATCTCGACGATTACTTCACCGGACCCCGAGACATCGCAAAGCACTCGAAATGGCCACTGATC CTACAGCTCCACGGCAGCATCATGCCAAAGCTTATTCTGCCGTTGCTGTTGATTAGCATCTGGGCAACTGCCATC ACCGTCATCTCGGCCAAGGTCCACTATCTCGGCGTCCAGTCTGTCCTCATCACCGTGACAGGCTTTGTCGTCTCC TTGTCTCTCTCCTTCCGATCTTCGACCGCATACGAGCGCTACACCGAGGGGAGAAAGTACTGGGCAACTCTCGTC CAGGCGTCGCAGATCCTGGGACGTGTCTTCTGGATCCACGCCACGGATCGAGGCAGCGAGTTCGACGCCCGCGAG GTTCTCCTGCAGAAGCTGAGTTCGATGAACCTGCTTGTCGCCTTCTCGTTGGCCCTCAAACACAGCCTACGATTC GAGCCCTACACGGCCTACCCAGACCTGCAAAACCTCATCGGCCACCTCGACACGTTTGCCAAATCAGCGACCGAG GCGCAGGGATCGATTTCAACCGCGCATAAGAAGAAGTTCTTCCGCGGTGTGGGCGAGTACCTCGGCGTCTCCTTC GCCGCAAGCAACCCTCGAAAGGCGATCAAGAAAGCCTCGCGTCCCTTGGGCAACCTGCCCCTGGAGATTCTGAGC CACCTGGCCGTGACAATTGACACGCTGGTGGCGAATGAACAGCTTCGAGTTCCCATACACCAGACCATGGCCTTC AATGCCCTGCAGTCGCTCAACGACGTCATGACGGGCACCGAGCGCGTCCTCTGCACGCCCCTGCCCATCGCCTAC ACCATCGCCATTTCGCAGTCGACCTATCTGTACATCGCCCTGCTGCCGTTCCAGCTGATTCCGCTGCTGCAGTGG ACCGCGATCCCGGCGACCATCGCAGCTAGCTGGATCATCCTCGGCCTGCTCTTCATCGGGCAGGAAGTCGAAAAC CCCTTTGGGCAGGATGTCAACGACCTGCCGCTCGACAGCTACTGCGAGCAGATTGCCGCAGACCTGGACATCATC GCCTCCTTCGACATGCGCGAATCTAGAAAGTTCCTAACGAGTAGCAACAACTTGCCGCTGTACCCCGTCAGCACG GCACCTGTCAGTGTCTGGATGCAGCGCAGCGAAGAGAAGCTACGCGAGGCCATCAAGCAGAAGCCCGTCAAGACG TTCGAGTGGCGACGATGGGGAACCAAACATTGCAGTTCCAGTGCGGCAACCAGCGTCGCAGGCGATCACAACGTC TAA |
| Transcript | >Hirsu2|8367 ATGGCAGACGGCGGCGATGTCATTGGCGAGCTGCCCCAAGGCAGCCACCAAGAAGCCAGGCGCGTGCGAAGCATC GAGATACCACCGCTGGACAAAGTCTGTTCTCCGCAGTCGCCCGTCGTCCCTGTCGCTCCTCAATCGTTCCATCGA AGGGGCTCTTTCGATCTCGACGATTACTTCACCGGACCCCGAGACATCGCAAAGCACTCGAAATGGCCACTGATC CTACAGCTCCACGGCAGCATCATGCCAAAGCTTATTCTGCCGTTGCTGTTGATTAGCATCTGGGCAACTGCCATC ACCGTCATCTCGGCCAAGGTCCACTATCTCGGCGTCCAGTCTGTCCTCATCACCGTGACAGGCTTTGTCGTCTCC TTGTCTCTCTCCTTCCGATCTTCGACCGCATACGAGCGCTACACCGAGGGGAGAAAGTACTGGGCAACTCTCGTC CAGGCGTCGCAGATCCTGGGACGTGTCTTCTGGATCCACGCCACGGATCGAGGCAGCGAGTTCGACGCCCGCGAG GTTCTCCTGCAGAAGCTGAGTTCGATGAACCTGCTTGTCGCCTTCTCGTTGGCCCTCAAACACAGCCTACGATTC GAGCCCTACACGGCCTACCCAGACCTGCAAAACCTCATCGGCCACCTCGACACGTTTGCCAAATCAGCGACCGAG GCGCAGGGATCGATTTCAACCGCGCATAAGAAGAAGTTCTTCCGCGGTGTGGGCGAGTACCTCGGCGTCTCCTTC GCCGCAAGCAACCCTCGAAAGGCGATCAAGAAAGCCTCGCGTCCCTTGGGCAACCTGCCCCTGGAGATTCTGAGC CACCTGGCCGTGACAATTGACACGCTGGTGGCGAATGAACAGCTTCGAGTTCCCATACACCAGACCATGGCCTTC AATGCCCTGCAGTCGCTCAACGACGTCATGACGGGCACCGAGCGCGTCCTCTGCACGCCCCTGCCCATCGCCTAC ACCATCGCCATTTCGCAGTCGACCTATCTGTACATCGCCCTGCTGCCGTTCCAGCTGATTCCGCTGCTGCAGTGG ACCGCGATCCCGGCGACCATCGCAGCTAGCTGGATCATCCTCGGCCTGCTCTTCATCGGGCAGGAAGTCGAAAAC CCCTTTGGGCAGGATGTCAACGACCTGCCGCTCGACAGCTACTGCGAGCAGATTGCCGCAGACCTGGACATCATC GCCTCCTTCGACATGCGCGAATCTAGAAAGTTCCTAACGAGTAGCAACAACTTGCCGCTGTACCCCGTCAGCACG GCACCTGTCAGTGTCTGGATGCAGCGCAGCGAAGAGAAGCTACGCGAGGCCATCAAGCAGAAGCCCGTCAAGACG TTCGAGTGGCGACGATGGGGAACCAAACATTGCAGTTCCAGTGCGGCAACCAGCGTCGCAGGCGATCACAACGTC TAA |
| Gene | >Hirsu2|8367 ATGGCAGACGGCGGCGATGTCATTGGCGAGCTGCCCCAAGGCAGCCACCAAGAAGCCAGGCGCGTGCGAAGCATC GAGATACCACCGCTGGACAAAGTCTGTTCTCCGCAGTCGCCCGTCGTCCCTGTCGCTCCTCAATCGTTCCATCGA AGGGGCTCTTTCGATCTCGACGATTACTTCACCGGACCCCGAGACATCGCAAAGCACTCGAAATGGCCACTGATC CTACAGCTCCACGGCAGCATCATGCCAAAGCTTATTCTGCCGTTGCTGTTGATTAGCATCTGGGCAACTGCCATC ACCGTCATCTCGGCCAAGGTCCACTATCTCGGCGTCCAGTCTGTCCTCATCACCGTGACAGGCTTTGTCGTCTCC TTGTCTCTCTCCTTCCGATCTTCGACCGCATACGAGCGCTACACCGAGGGGAGAAAGTACTGGGCAACTCTCGTC CAGGCGTCGCAGATCCTGGGACGTGTCTTCTGGATCCACGCCACGGATCGAGGCAGCGAGTTCGACGCCCGCGAG GTTCTCCTGCAGAAGCTGAGTTCGATGAACCTGCTTGTCGCCTTCTCGTTGGCCCTCAAACACAGCCTACGATTC GAGCCCTACACGGCCTACCCAGACCTGCAAAACCTCATCGGCCACCTCGACACGTTTGCCAAATCAGCGACCGAG GCGCAGGGATCGATTTCAACCGCGCATAAGAAGAAGTTCTTCCGCGGTGTGGGCGAGTACCTCGGCGTCTCCTTC GCCGCAAGCAACCCTCGAAAGGCGATCAAGAAAGCCTCGCGTCCCTTGGGCAACCTGCCCCTGGAGATTCTGAGC CACCTGGCCGTGACAATTGACACGCTGGTGGCGAATGAACAGCTTCGAGTTCCCATACACCAGACCATGGCCTTC AATGCCCTGCAGTCGCTCAACGACGTCATGACGGGCACCGAGCGCGTCCTCTGCACGCCCCTGCCCATCGCCTAC ACCATCGCCATTTCGCAGTCGACCTATCTGTACATCGCCCTGCTGCCGTTCCAGCTGATTCCGCTGCTGCAGTGG ACCGCGATCCCGGCGACCATCGCAGCTAGCTGGATCATCCTCGGCCTGCTCTTCATCGGGCAGGAAGTCGAAAAC CCCTTTGGGCAGGATGTCAACGACCTGCCGCTCGACAGCTACTGCGAGCAGATTGCCGCAGACCTGGACATCATC GCCTCCTTCGACATGCGCGAATCTAGAAAGTTCCTAACGAGTAGCAACAACTTGCCGCTGTACCCCGTCAGCACG GCACCTGTCAGTGTCTGGATGCAGCGCAGCGAAGAGAAGCTACGCGAGGCCATCAAGCAGAAGCCCGTCAAGACG TTCGAGTGGCGACGATGGGGAACCAAACATTGCAGTTCCAGTGCGGCAACCAGCGTCGCAGGCGATCACAACGTC TAA |