© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|8348 |
| Gene name | |
| Location | Contig_539:14913..16412 |
| Strand | + |
| Gene length (bp) | 1499 |
| Transcript length (bp) | 1290 |
| Coding sequence length (bp) | 1290 |
| Protein length (aa) | 430 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane | Signal peptide | 0.0873 | 0.1285 | 0.5282 | 0.6276 | 0.0945 | 0.0115 | 0.0971 | 0.4579 | 0.1974 | 0.0142 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 31 | 0.999532 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 234 | 256 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 5680 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|8348 MASRPGRRRRGSFAMRRLWTMLVAAAPAAQAILVAPGSPCSSGCGNVLDSTSTADLVCSTGAYAGATGQLFQGCV ECEMRSRFSNRNQSDVESMLYNLRYAVSYCLFGDPSNKQLVNTPCVTSKACGPFRDAIGYKNLSAQYQGFEYCQI WPVGDDVDYKSCAECLQAAENFYLANFVTVLQAGCDQKPAPGVGLGLEGNLFSTDSVNITAPTPTASVNPAWFDQ GPLDLGAKVGIAVGGLVLVLVVLGCAIVLNGKRRRRAFLRRLEAKYGHKSWPSPGARGEKAEPSRQPSRGWDDTP VSQQPLRGWDDSPMTASTDRPYPKYFSPYSSQYNSPVSAHHSPSTQLLGIMEPLGGDEPAPSSPGGKGKLRQEAY EMHQVDGAAASGSAADIPRAEAPVLSHPGYGRTSNSPARQYVPNEADVRPGTAL* |
| Coding | >Hirsu2|8348 ATGGCCTCGCGCCCGGGTCGCCGGCGACGGGGCTCCTTCGCCATGCGGCGCCTCTGGACGATGCTCGTGGCGGCG GCGCCGGCCGCGCAAGCCATCCTCGTCGCGCCCGGCTCGCCCTGCTCGTCCGGCTGCGGCAACGTGCTCGACTCG ACCTCGACGGCCGACCTCGTCTGCAGCACGGGCGCCTACGCCGGCGCCACCGGCCAGCTCTTCCAGGGCTGCGTC GAGTGCGAGATGCGCAGCCGCTTCTCCAACCGCAACCAGAGCGACGTCGAGTCGATGCTGTATAACCTGCGATAT GCCGTCTCCTACTGCCTGTTCGGCGACCCCAGCAACAAGCAGCTCGTCAACACGCCGTGTGTCACCAGCAAGGCG TGCGGCCCCTTCCGCGACGCCATCGGGTACAAGAACCTGTCGGCCCAGTACCAGGGCTTCGAGTACTGCCAGATC TGGCCCGTCGGCGACGACGTCGACTACAAGAGCTGCGCCGAGTGCCTGCAGGCGGCCGAGAACTTTTATCTCGCA AACTTCGTCACCGTTCTCCAGGCCGGCTGCGATCAGAAGCCGGCGCCCGGCGTCGGCCTGGGCCTCGAGGGCAAC CTCTTCTCCACCGACTCGGTCAACATCACGGCCCCGACGCCGACGGCCAGCGTCAACCCGGCCTGGTTCGACCAG GGCCCGCTCGATCTGGGGGCCAAGGTGGGCATCGCCGTCGGCGGCCTCGTCCTCGTCCTCGTCGTCCTCGGCTGC GCCATCGTGCTCAACGGCAAGCGCAGGAGAAGGGCCTTCCTGCGGAGGCTCGAGGCCAAGTACGGCCACAAGAGC TGGCCGTCGCCCGGCGCACGGGGCGAGAAGGCCGAGCCCAGCCGGCAGCCGTCCCGCGGCTGGGACGACACGCCC GTCAGCCAGCAGCCGCTGCGAGGCTGGGACGACTCGCCCATGACGGCCAGCACCGACAGGCCGTACCCCAAGTAC TTCTCGCCCTACTCGAGCCAGTACAACAGCCCCGTCAGCGCCCACCACAGCCCGAGCACGCAGCTGCTGGGCATC ATGGAGCCCCTCGGCGGCGACGAGCCCGCCCCGTCGTCGCCGGGAGGCAAGGGCAAGCTCAGGCAGGAGGCCTAT GAGATGCACCAGGTCGACGGCGCGGCAGCAAGCGGCAGCGCCGCCGACATCCCGCGGGCCGAGGCGCCCGTGCTG AGCCACCCGGGCTACGGCAGGACCAGCAACAGCCCGGCGAGGCAGTATGTCCCGAACGAGGCCGATGTCAGGCCC GGAACTGCCCTCTGA |
| Transcript | >Hirsu2|8348 ATGGCCTCGCGCCCGGGTCGCCGGCGACGGGGCTCCTTCGCCATGCGGCGCCTCTGGACGATGCTCGTGGCGGCG GCGCCGGCCGCGCAAGCCATCCTCGTCGCGCCCGGCTCGCCCTGCTCGTCCGGCTGCGGCAACGTGCTCGACTCG ACCTCGACGGCCGACCTCGTCTGCAGCACGGGCGCCTACGCCGGCGCCACCGGCCAGCTCTTCCAGGGCTGCGTC GAGTGCGAGATGCGCAGCCGCTTCTCCAACCGCAACCAGAGCGACGTCGAGTCGATGCTGTATAACCTGCGATAT GCCGTCTCCTACTGCCTGTTCGGCGACCCCAGCAACAAGCAGCTCGTCAACACGCCGTGTGTCACCAGCAAGGCG TGCGGCCCCTTCCGCGACGCCATCGGGTACAAGAACCTGTCGGCCCAGTACCAGGGCTTCGAGTACTGCCAGATC TGGCCCGTCGGCGACGACGTCGACTACAAGAGCTGCGCCGAGTGCCTGCAGGCGGCCGAGAACTTTTATCTCGCA AACTTCGTCACCGTTCTCCAGGCCGGCTGCGATCAGAAGCCGGCGCCCGGCGTCGGCCTGGGCCTCGAGGGCAAC CTCTTCTCCACCGACTCGGTCAACATCACGGCCCCGACGCCGACGGCCAGCGTCAACCCGGCCTGGTTCGACCAG GGCCCGCTCGATCTGGGGGCCAAGGTGGGCATCGCCGTCGGCGGCCTCGTCCTCGTCCTCGTCGTCCTCGGCTGC GCCATCGTGCTCAACGGCAAGCGCAGGAGAAGGGCCTTCCTGCGGAGGCTCGAGGCCAAGTACGGCCACAAGAGC TGGCCGTCGCCCGGCGCACGGGGCGAGAAGGCCGAGCCCAGCCGGCAGCCGTCCCGCGGCTGGGACGACACGCCC GTCAGCCAGCAGCCGCTGCGAGGCTGGGACGACTCGCCCATGACGGCCAGCACCGACAGGCCGTACCCCAAGTAC TTCTCGCCCTACTCGAGCCAGTACAACAGCCCCGTCAGCGCCCACCACAGCCCGAGCACGCAGCTGCTGGGCATC ATGGAGCCCCTCGGCGGCGACGAGCCCGCCCCGTCGTCGCCGGGAGGCAAGGGCAAGCTCAGGCAGGAGGCCTAT GAGATGCACCAGGTCGACGGCGCGGCAGCAAGCGGCAGCGCCGCCGACATCCCGCGGGCCGAGGCGCCCGTGCTG AGCCACCCGGGCTACGGCAGGACCAGCAACAGCCCGGCGAGGCAGTATGTCCCGAACGAGGCCGATGTCAGGCCC GGAACTGCCCTCTGA |
| Gene | >Hirsu2|8348 ATGGCCTCGCGCCCGGGTCGCCGGCGACGGGGCTCCTTCGCCATGCGGCGCCTCTGGACGATGCTCGTGGCGGCG GCGCCGGCCGCGCAAGCCATCCTCGTCGCGCCCGGCTCGCCCTGCTCGTCCGGCTGCGGCAACGTGCTCGACTCG ACCTCGACGGCCGACCTCGTCTGCAGCACGGGCGCCTACGCCGGCGCCACCGGCCAGCTCTTCCAGGGCTGCGTC GAGTGCGAGATGCGCAGCCGCTTCTCCAACCGCAACCAGAGCGACGTCGAGTCGATGCTGTGTATGCCCACGATG CCCTCGTCGCCGACTGCGCTGACCTCGGGCCTCGGGCCAGATAACCTGCGATATGCCGTCTCCTACTGCCTGTTC GGCGACCCCAGCAACAAGCAGCTCGTCAACACGCCGTGTGTCACCAGGTGCGGCGAGATCCGGCTGTCTCTCCAT CCCCCGCCGATTCGCTTCGGGGACTGACGCCCGTGACGCTGCAGCAAGGCGTGCGGCCCCTTCCGCGACGCCATC GGGTACAAGAACCTGTCGGCCCAGTACCAGGGCTTCGAGTACTGCCAGATCTGGCCCGTCGGCGACGACGTCGAC TACAAGAGCTGCGCCGAGTGCCTGCAGGCGGCCGAGAACTTTTATCTCGCAAACTGTTCGTCCCTGCCGTCCCCT TGTATCTCTCGACATACTGCTGCTATGGTCGTCGCTCACACGCGTCCGTTTCCCCCGATGCAGTCGTCACCGTTC TCCAGGCCGGCTGCGATCAGAAGCCGGCGCCCGGCGTCGGCCTGGGCCTCGAGGGCAACCTCTTCTCCACCGACT CGGTCAACATCACGGCCCCGACGCCGACGGCCAGCGTCAACCCGGCCTGGTTCGACCAGGGCCCGCTCGATCTGG GGGCCAAGGTGGGCATCGCCGTCGGCGGCCTCGTCCTCGTCCTCGTCGTCCTCGGCTGCGCCATCGTGCTCAACG GCAAGCGCAGGAGAAGGGCCTTCCTGCGGAGGCTCGAGGCCAAGTACGGCCACAAGAGCTGGCCGTCGCCCGGCG CACGGGGCGAGAAGGCCGAGCCCAGCCGGCAGCCGTCCCGCGGCTGGGACGACACGCCCGTCAGCCAGCAGCCGC TGCGAGGCTGGGACGACTCGCCCATGACGGCCAGCACCGACAGGCCGTACCCCAAGTACTTCTCGCCCTACTCGA GCCAGTACAACAGCCCCGTCAGCGCCCACCACAGCCCGAGCACGCAGCTGCTGGGCATCATGGAGCCCCTCGGCG GCGACGAGCCCGCCCCGTCGTCGCCGGGAGGCAAGGGCAAGCTCAGGCAGGAGGCCTATGAGATGCACCAGGTCG ACGGCGCGGCAGCAAGCGGCAGCGCCGCCGACATCCCGCGGGCCGAGGCGCCCGTGCTGAGCCACCCGGGCTACG GCAGGACCAGCAACAGCCCGGCGAGGCAGTATGTCCCGAACGAGGCCGATGTCAGGCCCGGAACTGCCCTCTGA |