Protein ID | Hirsu2|8348 |
Gene name | |
Location | Contig_539:14913..16412 |
Strand | + |
Gene length (bp) | 1499 |
Transcript length (bp) | 1290 |
Coding sequence length (bp) | 1290 |
Protein length (aa) | 430 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane | Signal peptide | 0.0873 | 0.1285 | 0.5282 | 0.6276 | 0.0945 | 0.0115 | 0.0971 | 0.4579 | 0.1974 | 0.0142 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 31 | 0.999532 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 234 | 256 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 5680 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|8348 MASRPGRRRRGSFAMRRLWTMLVAAAPAAQAILVAPGSPCSSGCGNVLDSTSTADLVCSTGAYAGATGQLFQGCV ECEMRSRFSNRNQSDVESMLYNLRYAVSYCLFGDPSNKQLVNTPCVTSKACGPFRDAIGYKNLSAQYQGFEYCQI WPVGDDVDYKSCAECLQAAENFYLANFVTVLQAGCDQKPAPGVGLGLEGNLFSTDSVNITAPTPTASVNPAWFDQ GPLDLGAKVGIAVGGLVLVLVVLGCAIVLNGKRRRRAFLRRLEAKYGHKSWPSPGARGEKAEPSRQPSRGWDDTP VSQQPLRGWDDSPMTASTDRPYPKYFSPYSSQYNSPVSAHHSPSTQLLGIMEPLGGDEPAPSSPGGKGKLRQEAY EMHQVDGAAASGSAADIPRAEAPVLSHPGYGRTSNSPARQYVPNEADVRPGTAL* |
Coding | >Hirsu2|8348 ATGGCCTCGCGCCCGGGTCGCCGGCGACGGGGCTCCTTCGCCATGCGGCGCCTCTGGACGATGCTCGTGGCGGCG GCGCCGGCCGCGCAAGCCATCCTCGTCGCGCCCGGCTCGCCCTGCTCGTCCGGCTGCGGCAACGTGCTCGACTCG ACCTCGACGGCCGACCTCGTCTGCAGCACGGGCGCCTACGCCGGCGCCACCGGCCAGCTCTTCCAGGGCTGCGTC GAGTGCGAGATGCGCAGCCGCTTCTCCAACCGCAACCAGAGCGACGTCGAGTCGATGCTGTATAACCTGCGATAT GCCGTCTCCTACTGCCTGTTCGGCGACCCCAGCAACAAGCAGCTCGTCAACACGCCGTGTGTCACCAGCAAGGCG TGCGGCCCCTTCCGCGACGCCATCGGGTACAAGAACCTGTCGGCCCAGTACCAGGGCTTCGAGTACTGCCAGATC TGGCCCGTCGGCGACGACGTCGACTACAAGAGCTGCGCCGAGTGCCTGCAGGCGGCCGAGAACTTTTATCTCGCA AACTTCGTCACCGTTCTCCAGGCCGGCTGCGATCAGAAGCCGGCGCCCGGCGTCGGCCTGGGCCTCGAGGGCAAC CTCTTCTCCACCGACTCGGTCAACATCACGGCCCCGACGCCGACGGCCAGCGTCAACCCGGCCTGGTTCGACCAG GGCCCGCTCGATCTGGGGGCCAAGGTGGGCATCGCCGTCGGCGGCCTCGTCCTCGTCCTCGTCGTCCTCGGCTGC GCCATCGTGCTCAACGGCAAGCGCAGGAGAAGGGCCTTCCTGCGGAGGCTCGAGGCCAAGTACGGCCACAAGAGC TGGCCGTCGCCCGGCGCACGGGGCGAGAAGGCCGAGCCCAGCCGGCAGCCGTCCCGCGGCTGGGACGACACGCCC GTCAGCCAGCAGCCGCTGCGAGGCTGGGACGACTCGCCCATGACGGCCAGCACCGACAGGCCGTACCCCAAGTAC TTCTCGCCCTACTCGAGCCAGTACAACAGCCCCGTCAGCGCCCACCACAGCCCGAGCACGCAGCTGCTGGGCATC ATGGAGCCCCTCGGCGGCGACGAGCCCGCCCCGTCGTCGCCGGGAGGCAAGGGCAAGCTCAGGCAGGAGGCCTAT GAGATGCACCAGGTCGACGGCGCGGCAGCAAGCGGCAGCGCCGCCGACATCCCGCGGGCCGAGGCGCCCGTGCTG AGCCACCCGGGCTACGGCAGGACCAGCAACAGCCCGGCGAGGCAGTATGTCCCGAACGAGGCCGATGTCAGGCCC GGAACTGCCCTCTGA |
Transcript | >Hirsu2|8348 ATGGCCTCGCGCCCGGGTCGCCGGCGACGGGGCTCCTTCGCCATGCGGCGCCTCTGGACGATGCTCGTGGCGGCG GCGCCGGCCGCGCAAGCCATCCTCGTCGCGCCCGGCTCGCCCTGCTCGTCCGGCTGCGGCAACGTGCTCGACTCG ACCTCGACGGCCGACCTCGTCTGCAGCACGGGCGCCTACGCCGGCGCCACCGGCCAGCTCTTCCAGGGCTGCGTC GAGTGCGAGATGCGCAGCCGCTTCTCCAACCGCAACCAGAGCGACGTCGAGTCGATGCTGTATAACCTGCGATAT GCCGTCTCCTACTGCCTGTTCGGCGACCCCAGCAACAAGCAGCTCGTCAACACGCCGTGTGTCACCAGCAAGGCG TGCGGCCCCTTCCGCGACGCCATCGGGTACAAGAACCTGTCGGCCCAGTACCAGGGCTTCGAGTACTGCCAGATC TGGCCCGTCGGCGACGACGTCGACTACAAGAGCTGCGCCGAGTGCCTGCAGGCGGCCGAGAACTTTTATCTCGCA AACTTCGTCACCGTTCTCCAGGCCGGCTGCGATCAGAAGCCGGCGCCCGGCGTCGGCCTGGGCCTCGAGGGCAAC CTCTTCTCCACCGACTCGGTCAACATCACGGCCCCGACGCCGACGGCCAGCGTCAACCCGGCCTGGTTCGACCAG GGCCCGCTCGATCTGGGGGCCAAGGTGGGCATCGCCGTCGGCGGCCTCGTCCTCGTCCTCGTCGTCCTCGGCTGC GCCATCGTGCTCAACGGCAAGCGCAGGAGAAGGGCCTTCCTGCGGAGGCTCGAGGCCAAGTACGGCCACAAGAGC TGGCCGTCGCCCGGCGCACGGGGCGAGAAGGCCGAGCCCAGCCGGCAGCCGTCCCGCGGCTGGGACGACACGCCC GTCAGCCAGCAGCCGCTGCGAGGCTGGGACGACTCGCCCATGACGGCCAGCACCGACAGGCCGTACCCCAAGTAC TTCTCGCCCTACTCGAGCCAGTACAACAGCCCCGTCAGCGCCCACCACAGCCCGAGCACGCAGCTGCTGGGCATC ATGGAGCCCCTCGGCGGCGACGAGCCCGCCCCGTCGTCGCCGGGAGGCAAGGGCAAGCTCAGGCAGGAGGCCTAT GAGATGCACCAGGTCGACGGCGCGGCAGCAAGCGGCAGCGCCGCCGACATCCCGCGGGCCGAGGCGCCCGTGCTG AGCCACCCGGGCTACGGCAGGACCAGCAACAGCCCGGCGAGGCAGTATGTCCCGAACGAGGCCGATGTCAGGCCC GGAACTGCCCTCTGA |
Gene | >Hirsu2|8348 ATGGCCTCGCGCCCGGGTCGCCGGCGACGGGGCTCCTTCGCCATGCGGCGCCTCTGGACGATGCTCGTGGCGGCG GCGCCGGCCGCGCAAGCCATCCTCGTCGCGCCCGGCTCGCCCTGCTCGTCCGGCTGCGGCAACGTGCTCGACTCG ACCTCGACGGCCGACCTCGTCTGCAGCACGGGCGCCTACGCCGGCGCCACCGGCCAGCTCTTCCAGGGCTGCGTC GAGTGCGAGATGCGCAGCCGCTTCTCCAACCGCAACCAGAGCGACGTCGAGTCGATGCTGTGTATGCCCACGATG CCCTCGTCGCCGACTGCGCTGACCTCGGGCCTCGGGCCAGATAACCTGCGATATGCCGTCTCCTACTGCCTGTTC GGCGACCCCAGCAACAAGCAGCTCGTCAACACGCCGTGTGTCACCAGGTGCGGCGAGATCCGGCTGTCTCTCCAT CCCCCGCCGATTCGCTTCGGGGACTGACGCCCGTGACGCTGCAGCAAGGCGTGCGGCCCCTTCCGCGACGCCATC GGGTACAAGAACCTGTCGGCCCAGTACCAGGGCTTCGAGTACTGCCAGATCTGGCCCGTCGGCGACGACGTCGAC TACAAGAGCTGCGCCGAGTGCCTGCAGGCGGCCGAGAACTTTTATCTCGCAAACTGTTCGTCCCTGCCGTCCCCT TGTATCTCTCGACATACTGCTGCTATGGTCGTCGCTCACACGCGTCCGTTTCCCCCGATGCAGTCGTCACCGTTC TCCAGGCCGGCTGCGATCAGAAGCCGGCGCCCGGCGTCGGCCTGGGCCTCGAGGGCAACCTCTTCTCCACCGACT CGGTCAACATCACGGCCCCGACGCCGACGGCCAGCGTCAACCCGGCCTGGTTCGACCAGGGCCCGCTCGATCTGG GGGCCAAGGTGGGCATCGCCGTCGGCGGCCTCGTCCTCGTCCTCGTCGTCCTCGGCTGCGCCATCGTGCTCAACG GCAAGCGCAGGAGAAGGGCCTTCCTGCGGAGGCTCGAGGCCAAGTACGGCCACAAGAGCTGGCCGTCGCCCGGCG CACGGGGCGAGAAGGCCGAGCCCAGCCGGCAGCCGTCCCGCGGCTGGGACGACACGCCCGTCAGCCAGCAGCCGC TGCGAGGCTGGGACGACTCGCCCATGACGGCCAGCACCGACAGGCCGTACCCCAAGTACTTCTCGCCCTACTCGA GCCAGTACAACAGCCCCGTCAGCGCCCACCACAGCCCGAGCACGCAGCTGCTGGGCATCATGGAGCCCCTCGGCG GCGACGAGCCCGCCCCGTCGTCGCCGGGAGGCAAGGGCAAGCTCAGGCAGGAGGCCTATGAGATGCACCAGGTCG ACGGCGCGGCAGCAAGCGGCAGCGCCGCCGACATCCCGCGGGCCGAGGCGCCCGTGCTGAGCCACCCGGGCTACG GCAGGACCAGCAACAGCCCGGCGAGGCAGTATGTCCCGAACGAGGCCGATGTCAGGCCCGGAACTGCCCTCTGA |