© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|8342 |
| Gene name | |
| Location | Contig_539:2314..3893 |
| Strand | - |
| Gene length (bp) | 1579 |
| Transcript length (bp) | 1464 |
| Coding sequence length (bp) | 1464 |
| Protein length (aa) | 488 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane | Signal peptide|Transmembrane domain | 0.1376 | 0.111 | 0.4938 | 0.657 | 0.1214 | 0.0203 | 0.1142 | 0.3612 | 0.2744 | 0.0152 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 223 | 245 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 4118 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|8342 MRAGPEAVAAALLAVCRAAAALEVAPGSRCAARCLDAASGDRLEASASTTRDADVSCRDADYFTTDRGVKFRQCL DCLQTSSQAAEGESDRGWYIYNLRYVLSTCLFSVPRAPLAGVASARCDPAKACKPLQASLSRRDYCTADNGSFTK SNLSPCLSCLRAAEGGVSLSNFMAALEADCVDDGRLLRLNSSLFAPEAVSASGPTARGRDDETRPSGPSPGTVAG IAVGIVSIFILAAALFALYWRRERAMDRENEEESEVGWPAATAGKDGSGSGGLLARLFASSGKTEAAGPVGRTVY GSDHDGQKDGSHGGIPAHPAYIPFTASQATDGSGAGRAATPDAPKRTNRPDTFAMQAYLAAAEEAARLGPRPRAH EHEPESEGRQRGRRPLASLPKLGVSRKRVAAKTTGGLELPVSEPMGAEGDGRRGWSLGEAARRSKHQHEDRPRRS RQQQEDRPRRSRQQHEDADDGFIEVPLRSGKSTLYGY* |
| Coding | >Hirsu2|8342 ATGAGGGCCGGGCCAGAAGCCGTAGCCGCCGCGCTCCTGGCCGTATGCCGCGCCGCCGCCGCTCTCGAGGTCGCG CCGGGCTCCCGTTGTGCCGCGCGCTGCTTGGACGCTGCGAGCGGGGACAGGCTGGAGGCGTCGGCGTCGACAACA CGGGACGCCGACGTCAGCTGCCGGGACGCCGACTACTTCACGACGGACCGGGGCGTCAAGTTCAGGCAATGCTTG GACTGCCTGCAGACGAGCAGCCAGGCTGCGGAGGGGGAGTCGGACCGGGGGTGGTATATCTACAACCTTCGCTAC GTCCTCAGCACCTGTCTCTTCTCCGTGCCCCGAGCACCTCTGGCCGGCGTCGCCAGCGCGCGGTGCGACCCGGCC AAGGCTTGCAAGCCCCTGCAGGCCTCCCTCAGCAGGCGTGATTACTGCACGGCCGACAACGGGTCGTTTACGAAG TCGAATCTGTCGCCGTGCCTCAGCTGTCTCCGTGCTGCCGAGGGGGGGGTCTCCCTCTCAAACTTCATGGCCGCT CTCGAGGCCGACTGCGTGGACGACGGGCGCCTGCTGCGACTCAACAGCAGTCTCTTCGCCCCAGAGGCCGTTAGC GCGAGCGGCCCCACGGCCCGCGGCCGAGATGACGAGACAAGGCCGTCCGGCCCCTCGCCCGGCACCGTTGCCGGC ATTGCCGTAGGCATTGTTTCCATCTTCATCCTGGCCGCCGCCCTGTTCGCTCTGTACTGGAGGCGCGAGAGGGCC ATGGACAGAGAGAATGAGGAGGAGTCGGAGGTCGGCTGGCCGGCGGCGACGGCCGGTAAAGACGGGTCCGGCAGC GGCGGACTCTTGGCCCGCCTCTTCGCTTCCAGCGGCAAGACCGAGGCTGCCGGTCCGGTGGGCCGAACGGTGTAC GGCTCGGACCACGACGGGCAGAAAGACGGGTCGCACGGCGGGATTCCCGCCCATCCGGCGTACATACCGTTCACG GCCTCGCAGGCGACGGACGGCTCAGGCGCGGGACGAGCAGCGACGCCGGATGCGCCCAAGAGGACGAACAGGCCG GACACGTTTGCGATGCAGGCGTACCTCGCGGCGGCGGAGGAGGCGGCGCGGCTGGGCCCTCGGCCGCGCGCGCAC GAGCACGAGCCCGAGTCAGAAGGCAGGCAGAGAGGACGGAGGCCGCTGGCGTCTCTGCCGAAACTCGGCGTGTCG AGGAAGCGCGTGGCGGCGAAGACGACAGGCGGACTTGAGCTGCCAGTCTCGGAGCCAATGGGAGCGGAGGGAGAT GGTCGCCGTGGCTGGTCCCTCGGCGAGGCGGCACGACGGTCGAAGCACCAGCACGAGGACAGGCCACGACGGTCG AGGCAACAGCAAGAGGACAGGCCACGACGGTCGAGGCAACAGCACGAGGACGCCGACGACGGTTTCATCGAGGTA CCGCTGCGCAGCGGCAAGAGCACTCTCTACGGATACTAG |
| Transcript | >Hirsu2|8342 ATGAGGGCCGGGCCAGAAGCCGTAGCCGCCGCGCTCCTGGCCGTATGCCGCGCCGCCGCCGCTCTCGAGGTCGCG CCGGGCTCCCGTTGTGCCGCGCGCTGCTTGGACGCTGCGAGCGGGGACAGGCTGGAGGCGTCGGCGTCGACAACA CGGGACGCCGACGTCAGCTGCCGGGACGCCGACTACTTCACGACGGACCGGGGCGTCAAGTTCAGGCAATGCTTG GACTGCCTGCAGACGAGCAGCCAGGCTGCGGAGGGGGAGTCGGACCGGGGGTGGTATATCTACAACCTTCGCTAC GTCCTCAGCACCTGTCTCTTCTCCGTGCCCCGAGCACCTCTGGCCGGCGTCGCCAGCGCGCGGTGCGACCCGGCC AAGGCTTGCAAGCCCCTGCAGGCCTCCCTCAGCAGGCGTGATTACTGCACGGCCGACAACGGGTCGTTTACGAAG TCGAATCTGTCGCCGTGCCTCAGCTGTCTCCGTGCTGCCGAGGGGGGGGTCTCCCTCTCAAACTTCATGGCCGCT CTCGAGGCCGACTGCGTGGACGACGGGCGCCTGCTGCGACTCAACAGCAGTCTCTTCGCCCCAGAGGCCGTTAGC GCGAGCGGCCCCACGGCCCGCGGCCGAGATGACGAGACAAGGCCGTCCGGCCCCTCGCCCGGCACCGTTGCCGGC ATTGCCGTAGGCATTGTTTCCATCTTCATCCTGGCCGCCGCCCTGTTCGCTCTGTACTGGAGGCGCGAGAGGGCC ATGGACAGAGAGAATGAGGAGGAGTCGGAGGTCGGCTGGCCGGCGGCGACGGCCGGTAAAGACGGGTCCGGCAGC GGCGGACTCTTGGCCCGCCTCTTCGCTTCCAGCGGCAAGACCGAGGCTGCCGGTCCGGTGGGCCGAACGGTGTAC GGCTCGGACCACGACGGGCAGAAAGACGGGTCGCACGGCGGGATTCCCGCCCATCCGGCGTACATACCGTTCACG GCCTCGCAGGCGACGGACGGCTCAGGCGCGGGACGAGCAGCGACGCCGGATGCGCCCAAGAGGACGAACAGGCCG GACACGTTTGCGATGCAGGCGTACCTCGCGGCGGCGGAGGAGGCGGCGCGGCTGGGCCCTCGGCCGCGCGCGCAC GAGCACGAGCCCGAGTCAGAAGGCAGGCAGAGAGGACGGAGGCCGCTGGCGTCTCTGCCGAAACTCGGCGTGTCG AGGAAGCGCGTGGCGGCGAAGACGACAGGCGGACTTGAGCTGCCAGTCTCGGAGCCAATGGGAGCGGAGGGAGAT GGTCGCCGTGGCTGGTCCCTCGGCGAGGCGGCACGACGGTCGAAGCACCAGCACGAGGACAGGCCACGACGGTCG AGGCAACAGCAAGAGGACAGGCCACGACGGTCGAGGCAACAGCACGAGGACGCCGACGACGGTTTCATCGAGGTA CCGCTGCGCAGCGGCAAGAGCACTCTCTACGGATACTAG |
| Gene | >Hirsu2|8342 ATGAGGGCCGGGCCAGAAGCCGTAGCCGCCGCGCTCCTGGCCGTATGCCGCGCCGCCGCCGCTCTCGAGGTCGCG CCGGGCTCCCGTTGTGCCGCGCGCTGCTTGGACGCTGCGAGCGGGGACAGGCTGGAGGCGTCGGCGTCGACAACA CGGGACGCCGACGTCAGCTGCCGGGACGCCGACTACTTCACGACGGACCGGGGCGTCAAGTTCAGGCAATGCTTG GACTGCCTGCAGACGAGCAGCCAGGCTGCGGAGGGGGAGTCGGACCGGGGGTGGTATATCTGTACGCCTCCACGT CGTCGGCCGGCGCTGCCGCCCTCTTCTAACGTCCGTTTCTGCAAAGACAACCTTCGCTACGTCCTCAGCACCTGT CTCTTCTCCGTGCCCCGAGCACCTCTGGCCGGCGTCGCCAGCGCGCGGTGCGACCCGGCCAAGGCTTGCAAGCCC CTGCAGGCCTCCCTCAGCAGGCGTGATTACTGCACGGCCGACAACGGGTCGTTTACGAAGTCGAATCTGTCGCCG TGCCTCAGCTGTCTCCGTGCTGCCGAGGGGGGGGTCTCCCTCTCAAACTGTAAGGTGTCCGTCGTGGGACGCTTC GGCGCCGTAGGCTGACTGGCGTGTCTTAGTCATGGCCGCTCTCGAGGCCGACTGCGTGGACGACGGGCGCCTGCT GCGACTCAACAGCAGTCTCTTCGCCCCAGAGGCCGTTAGCGCGAGCGGCCCCACGGCCCGCGGCCGAGATGACGA GACAAGGCCGTCCGGCCCCTCGCCCGGCACCGTTGCCGGCATTGCCGTAGGCATTGTTTCCATCTTCATCCTGGC CGCCGCCCTGTTCGCTCTGTACTGGAGGCGCGAGAGGGCCATGGACAGAGAGAATGAGGAGGAGTCGGAGGTCGG CTGGCCGGCGGCGACGGCCGGTAAAGACGGGTCCGGCAGCGGCGGACTCTTGGCCCGCCTCTTCGCTTCCAGCGG CAAGACCGAGGCTGCCGGTCCGGTGGGCCGAACGGTGTACGGCTCGGACCACGACGGGCAGAAAGACGGGTCGCA CGGCGGGATTCCCGCCCATCCGGCGTACATACCGTTCACGGCCTCGCAGGCGACGGACGGCTCAGGCGCGGGACG AGCAGCGACGCCGGATGCGCCCAAGAGGACGAACAGGCCGGACACGTTTGCGATGCAGGCGTACCTCGCGGCGGC GGAGGAGGCGGCGCGGCTGGGCCCTCGGCCGCGCGCGCACGAGCACGAGCCCGAGTCAGAAGGCAGGCAGAGAGG ACGGAGGCCGCTGGCGTCTCTGCCGAAACTCGGCGTGTCGAGGAAGCGCGTGGCGGCGAAGACGACAGGCGGACT TGAGCTGCCAGTCTCGGAGCCAATGGGAGCGGAGGGAGATGGTCGCCGTGGCTGGTCCCTCGGCGAGGCGGCACG ACGGTCGAAGCACCAGCACGAGGACAGGCCACGACGGTCGAGGCAACAGCAAGAGGACAGGCCACGACGGTCGAG GCAACAGCACGAGGACGCCGACGACGGTTTCATCGAGGTACCGCTGCGCAGCGGCAAGAGCACTCTCTACGGATA CTAG |