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| Protein ID | Hirsu2|8321 |
| Gene name | |
| Location | Contig_535:7834..8356 |
| Strand | - |
| Gene length (bp) | 522 |
| Transcript length (bp) | 522 |
| Coding sequence length (bp) | 522 |
| Protein length (aa) | 174 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02737 | 3HCDH_N | 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain | 2.4E-21 | 7 | 161 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P52041|HBD_CLOAB | 3-hydroxybutyryl-CoA dehydrogenase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=hbd PE=1 SV=2 | 7 | 173 | 4.0E-09 |
| sp|Q9WVK7|HCDH_RAT | Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Hadh PE=2 SV=1 | 54 | 173 | 9.0E-09 |
| sp|Q61425|HCDH_MOUSE | Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Mus musculus GN=Hadh PE=1 SV=2 | 54 | 173 | 9.0E-09 |
| sp|Q98CR3|LCDH_RHILO | L-carnitine dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=lcdH PE=3 SV=1 | 14 | 173 | 2.0E-08 |
| sp|P34439|HCDH1_CAEEL | Probable 3-hydroxyacyl-CoA dehydrogenase F54C8.1 OS=Caenorhabditis elegans GN=F54C8.1 PE=1 SV=1 | 7 | 173 | 2.0E-08 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P52041|HBD_CLOAB | 3-hydroxybutyryl-CoA dehydrogenase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=hbd PE=1 SV=2 | 7 | 173 | 4.0E-09 |
| sp|Q9WVK7|HCDH_RAT | Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Hadh PE=2 SV=1 | 54 | 173 | 9.0E-09 |
| sp|Q61425|HCDH_MOUSE | Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Mus musculus GN=Hadh PE=1 SV=2 | 54 | 173 | 9.0E-09 |
| sp|Q98CR3|LCDH_RHILO | L-carnitine dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=lcdH PE=3 SV=1 | 14 | 173 | 2.0E-08 |
| sp|P34439|HCDH1_CAEEL | Probable 3-hydroxyacyl-CoA dehydrogenase F54C8.1 OS=Caenorhabditis elegans GN=F54C8.1 PE=1 SV=1 | 7 | 173 | 2.0E-08 |
| sp|P00348|HCDH_PIG | Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Sus scrofa GN=HADH PE=1 SV=2 | 54 | 173 | 3.0E-08 |
| sp|Q16836|HCDH_HUMAN | Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Homo sapiens GN=HADH PE=1 SV=3 | 48 | 173 | 3.0E-08 |
| sp|Q5LTH8|LCDH_RUEPO | L-carnitine dehydrogenase OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=lcdH PE=3 SV=1 | 14 | 173 | 1.0E-07 |
| sp|Q29554|ECHA_PIG | Trifunctional enzyme subunit alpha, mitochondrial OS=Sus scrofa GN=HADHA PE=1 SV=1 | 52 | 145 | 8.0E-07 |
| sp|Q4V182|LCDH_BACCZ | L-carnitine dehydrogenase OS=Bacillus cereus (strain ZK / E33L) GN=lcdH PE=3 SV=1 | 14 | 173 | 8.0E-07 |
| sp|Q39659|MFPA_CUCSA | Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Cucumis sativus PE=1 SV=1 | 64 | 173 | 2.0E-06 |
| sp|A1RI92|FADJ_SHESW | Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain W3-18-1) GN=fadJ PE=3 SV=1 | 17 | 173 | 2.0E-06 |
| sp|P83589|HCDH_DEIRA | Probable 3-hydroxyacyl-CoA dehydrogenase OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=DR_2477 PE=1 SV=2 | 53 | 173 | 3.0E-06 |
| sp|Q7MIS5|FADJ_VIBVY | Fatty acid oxidation complex subunit alpha OS=Vibrio vulnificus (strain YJ016) GN=fadJ PE=3 SV=1 | 15 | 173 | 9.0E-06 |
| sp|Q8DB47|FADJ_VIBVU | Fatty acid oxidation complex subunit alpha OS=Vibrio vulnificus (strain CMCP6) GN=fadJ PE=3 SV=1 | 15 | 173 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006631 | fatty acid metabolic process | Yes |
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003857 | 3-hydroxyacyl-CoA dehydrogenase activity | Yes |
| GO:0055114 | oxidation-reduction process | Yes |
| GO:0071704 | organic substance metabolic process | No |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | No |
| GO:0003674 | molecular_function | No |
| GO:0044255 | cellular lipid metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0008152 | metabolic process | No |
| GO:0043436 | oxoacid metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | No |
| GO:0019752 | carboxylic acid metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0006082 | organic acid metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0032787 | monocarboxylic acid metabolic process | No |
| GO:0044281 | small molecule metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 15 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|8321 LSSSLAAEWWAAGGYDVHIRDPSEEQRAAALHYWANNMTQHPGGKQGTVQAFEDLAAAVDRSWLVVEAVPEKLSV KVSTFVELERVAPADCVMCSNSSSFKSWEMVEERQVSTRRRVLSMHYYMPPDNVVVELMTDGDTDPDILAFLADK CRGVGLHPYVARTESAGLIFNRL* |
| Coding | >Hirsu2|8321 CTGTCGTCGTCCTTGGCGGCGGAGTGGTGGGCTGCCGGCGGCTATGACGTCCACATCCGCGACCCCAGCGAGGAG CAGAGGGCGGCGGCGCTGCATTACTGGGCCAACAACATGACCCAGCATCCCGGCGGCAAGCAGGGGACCGTCCAG GCCTTCGAGGACCTGGCGGCGGCCGTCGACAGGTCGTGGTTGGTGGTCGAGGCCGTGCCCGAGAAGCTCTCGGTC AAGGTGTCGACCTTTGTCGAGCTGGAGAGGGTGGCGCCCGCGGACTGCGTCATGTGCAGCAACTCGTCGTCGTTC AAGTCGTGGGAGATGGTGGAGGAGCGGCAGGTGTCGACGAGGAGGCGCGTCCTCAGCATGCACTACTACATGCCC CCCGACAACGTCGTCGTCGAGCTCATGACCGACGGCGACACCGACCCGGACATCTTGGCCTTCCTGGCCGACAAG TGCCGGGGCGTCGGCCTGCACCCGTACGTGGCCCGCACAGAGTCGGCCGGCCTCATCTTCAACCGCCTGTAG |
| Transcript | >Hirsu2|8321 CTGTCGTCGTCCTTGGCGGCGGAGTGGTGGGCTGCCGGCGGCTATGACGTCCACATCCGCGACCCCAGCGAGGAG CAGAGGGCGGCGGCGCTGCATTACTGGGCCAACAACATGACCCAGCATCCCGGCGGCAAGCAGGGGACCGTCCAG GCCTTCGAGGACCTGGCGGCGGCCGTCGACAGGTCGTGGTTGGTGGTCGAGGCCGTGCCCGAGAAGCTCTCGGTC AAGGTGTCGACCTTTGTCGAGCTGGAGAGGGTGGCGCCCGCGGACTGCGTCATGTGCAGCAACTCGTCGTCGTTC AAGTCGTGGGAGATGGTGGAGGAGCGGCAGGTGTCGACGAGGAGGCGCGTCCTCAGCATGCACTACTACATGCCC CCCGACAACGTCGTCGTCGAGCTCATGACCGACGGCGACACCGACCCGGACATCTTGGCCTTCCTGGCCGACAAG TGCCGGGGCGTCGGCCTGCACCCGTACGTGGCCCGCACAGAGTCGGCCGGCCTCATCTTCAACCGCCTGTAG |
| Gene | >Hirsu2|8321 CTGTCGTCGTCCTTGGCGGCGGAGTGGTGGGCTGCCGGCGGCTATGACGTCCACATCCGCGACCCCAGCGAGGAG CAGAGGGCGGCGGCGCTGCATTACTGGGCCAACAACATGACCCAGCATCCCGGCGGCAAGCAGGGGACCGTCCAG GCCTTCGAGGACCTGGCGGCGGCCGTCGACAGGTCGTGGTTGGTGGTCGAGGCCGTGCCCGAGAAGCTCTCGGTC AAGGTGTCGACCTTTGTCGAGCTGGAGAGGGTGGCGCCCGCGGACTGCGTCATGTGCAGCAACTCGTCGTCGTTC AAGTCGTGGGAGATGGTGGAGGAGCGGCAGGTGTCGACGAGGAGGCGCGTCCTCAGCATGCACTACTACATGCCC CCCGACAACGTCGTCGTCGAGCTCATGACCGACGGCGACACCGACCCGGACATCTTGGCCTTCCTGGCCGACAAG TGCCGGGGCGTCGGCCTGCACCCGTACGTGGCCCGCACAGAGTCGGCCGGCCTCATCTTCAACCGCCTGTAG |