© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|8245 |
| Gene name | |
| Location | Contig_525:2163..3309 |
| Strand | - |
| Gene length (bp) | 1146 |
| Transcript length (bp) | 1002 |
| Coding sequence length (bp) | 1002 |
| Protein length (aa) | 334 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07978 | NIPSNAP | NIPSNAP | 3.1E-08 | 125 | 221 |
| PF07978 | NIPSNAP | NIPSNAP | 7.8E-29 | 234 | 331 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O55125|NIPS1_MOUSE | Protein NipSnap homolog 1 OS=Mus musculus GN=Nipsnap1 PE=1 SV=1 | 121 | 332 | 7.0E-47 |
| sp|Q9BPW8|NIPS1_HUMAN | Protein NipSnap homolog 1 OS=Homo sapiens GN=NIPSNAP1 PE=1 SV=1 | 121 | 332 | 1.0E-46 |
| sp|Q9PU58|NIPS2_DANRE | Protein NipSnap homolog 2 OS=Danio rerio GN=gbas PE=2 SV=2 | 121 | 332 | 2.0E-46 |
| sp|O75323|NIPS2_HUMAN | Protein NipSnap homolog 2 OS=Homo sapiens GN=GBAS PE=1 SV=1 | 121 | 332 | 2.0E-45 |
| sp|O55126|NIPS2_MOUSE | Protein NipSnap homolog 2 OS=Mus musculus GN=Gbas PE=1 SV=1 | 121 | 332 | 4.0E-45 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O55125|NIPS1_MOUSE | Protein NipSnap homolog 1 OS=Mus musculus GN=Nipsnap1 PE=1 SV=1 | 121 | 332 | 7.0E-47 |
| sp|Q9BPW8|NIPS1_HUMAN | Protein NipSnap homolog 1 OS=Homo sapiens GN=NIPSNAP1 PE=1 SV=1 | 121 | 332 | 1.0E-46 |
| sp|Q9PU58|NIPS2_DANRE | Protein NipSnap homolog 2 OS=Danio rerio GN=gbas PE=2 SV=2 | 121 | 332 | 2.0E-46 |
| sp|O75323|NIPS2_HUMAN | Protein NipSnap homolog 2 OS=Homo sapiens GN=GBAS PE=1 SV=1 | 121 | 332 | 2.0E-45 |
| sp|O55126|NIPS2_MOUSE | Protein NipSnap homolog 2 OS=Mus musculus GN=Gbas PE=1 SV=1 | 121 | 332 | 4.0E-45 |
| sp|Q9VXK0|NIPSN_DROME | Protein NipSnap OS=Drosophila melanogaster GN=Nipsnap PE=2 SV=2 | 108 | 331 | 5.0E-41 |
| sp|P34492|YMQ1_CAEEL | Putative NipSnap protein K02D10.1 OS=Caenorhabditis elegans GN=K02D10.1 PE=2 SV=4 | 80 | 330 | 2.0E-35 |
| sp|Q54I58|NIPSN_DICDI | Protein NipSnap homolog OS=Dictyostelium discoideum GN=nipsnap PE=3 SV=1 | 115 | 327 | 5.0E-16 |
| sp|Q9UFN0|NPS3A_HUMAN | Protein NipSnap homolog 3A OS=Homo sapiens GN=NIPSNAP3A PE=1 SV=2 | 200 | 330 | 2.0E-09 |
| sp|Q5RAA9|NPS3A_PONAB | Protein NipSnap homolog 3A OS=Pongo abelii GN=NIPSNAP3A PE=2 SV=1 | 101 | 332 | 2.0E-08 |
| sp|Q9UFN0|NPS3A_HUMAN | Protein NipSnap homolog 3A OS=Homo sapiens GN=NIPSNAP3A PE=1 SV=2 | 101 | 332 | 4.0E-08 |
| sp|Q9BS92|NPS3B_HUMAN | Protein NipSnap homolog 3B OS=Homo sapiens GN=NIPSNAP3B PE=2 SV=1 | 200 | 330 | 6.0E-08 |
| sp|Q9BS92|NPS3B_HUMAN | Protein NipSnap homolog 3B OS=Homo sapiens GN=NIPSNAP3B PE=2 SV=1 | 158 | 332 | 2.0E-07 |
| sp|Q9CQE1|NPS3B_MOUSE | Protein NipSnap homolog 3B OS=Mus musculus GN=Nipsnap3b PE=1 SV=1 | 129 | 332 | 4.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|8245 MLRPGLARRAAAAAAFAPAGTRALATTAAALRLAKTPSMGDINPSSASVDSFNSKQKAFREQLAEAQREQGARVT AQAKQKEQDRKSGPLSNLIYGTKEGREMEAQIQASFSQVLARGKYVHSIVLHEVKPDMVDEYVDLIGTWYPQIAN ATENKVHLVGSWRTEIGDCDTFVHIWEYQKYAGYHESRYSITHHPQFAELDRKLKRMINSKSISLMQEFSFWPTT APRELGGIFELRSYELHPGNLLEWETHWRRGLKARREVMEGVGAWFVQIGDLNTVHHLWQFANLEERRERREKSW SVEGWSDTVHKTVPLIQTMKSRIMIAMPWSPVA* |
| Coding | >Hirsu2|8245 ATGTTGCGTCCAGGTCTCGCCCGGCGTGCCGCCGCCGCAGCGGCATTCGCCCCTGCTGGCACCAGGGCGCTGGCC ACCACCGCGGCCGCCCTCAGGCTGGCCAAGACGCCCTCGATGGGCGACATCAACCCTTCGTCCGCCTCGGTCGAC TCCTTCAACAGCAAGCAAAAGGCATTCCGGGAGCAGCTGGCAGAGGCGCAGAGGGAGCAGGGAGCACGAGTCACT GCCCAGGCCAAGCAGAAGGAGCAGGACCGCAAGTCGGGCCCCCTCTCCAACCTCATCTACGGCACCAAGGAGGGG AGGGAGATGGAGGCCCAGATCCAGGCCAGCTTCAGCCAGGTCTTGGCCCGGGGCAAGTATGTACACTCCATAGTC CTCCACGAGGTCAAGCCCGACATGGTGGACGAGTACGTCGACCTCATCGGTACATGGTATCCGCAGATCGCCAAC GCGACGGAGAACAAGGTACACTTGGTGGGGAGCTGGCGCACCGAGATAGGTGACTGCGACACGTTTGTGCACATC TGGGAATACCAGAAGTACGCGGGCTACCACGAGTCCAGATACTCCATCACCCACCATCCCCAGTTTGCCGAGCTA GACCGGAAGCTCAAACGAATGATCAACTCCAAGAGCATCTCTCTCATGCAAGAGTTCTCCTTCTGGCCCACGACC GCCCCTCGAGAGCTGGGCGGAATCTTCGAGCTTCGATCGTACGAGCTGCACCCAGGCAACCTGCTGGAGTGGGAG ACACACTGGAGGCGCGGCCTCAAGGCCCGCCGCGAGGTCATGGAGGGCGTGGGCGCGTGGTTCGTTCAAATAGGA GACCTGAACACGGTCCACCACCTCTGGCAGTTTGCTAACCTGGAGGAGAGGCGCGAGCGCCGGGAGAAGAGCTGG TCCGTTGAGGGATGGAGCGACACGGTCCACAAGACGGTGCCTCTGATCCAGACCATGAAGTCGAGGATCATGATC GCCATGCCGTGGTCGCCCGTGGCCTAA |
| Transcript | >Hirsu2|8245 ATGTTGCGTCCAGGTCTCGCCCGGCGTGCCGCCGCCGCAGCGGCATTCGCCCCTGCTGGCACCAGGGCGCTGGCC ACCACCGCGGCCGCCCTCAGGCTGGCCAAGACGCCCTCGATGGGCGACATCAACCCTTCGTCCGCCTCGGTCGAC TCCTTCAACAGCAAGCAAAAGGCATTCCGGGAGCAGCTGGCAGAGGCGCAGAGGGAGCAGGGAGCACGAGTCACT GCCCAGGCCAAGCAGAAGGAGCAGGACCGCAAGTCGGGCCCCCTCTCCAACCTCATCTACGGCACCAAGGAGGGG AGGGAGATGGAGGCCCAGATCCAGGCCAGCTTCAGCCAGGTCTTGGCCCGGGGCAAGTATGTACACTCCATAGTC CTCCACGAGGTCAAGCCCGACATGGTGGACGAGTACGTCGACCTCATCGGTACATGGTATCCGCAGATCGCCAAC GCGACGGAGAACAAGGTACACTTGGTGGGGAGCTGGCGCACCGAGATAGGTGACTGCGACACGTTTGTGCACATC TGGGAATACCAGAAGTACGCGGGCTACCACGAGTCCAGATACTCCATCACCCACCATCCCCAGTTTGCCGAGCTA GACCGGAAGCTCAAACGAATGATCAACTCCAAGAGCATCTCTCTCATGCAAGAGTTCTCCTTCTGGCCCACGACC GCCCCTCGAGAGCTGGGCGGAATCTTCGAGCTTCGATCGTACGAGCTGCACCCAGGCAACCTGCTGGAGTGGGAG ACACACTGGAGGCGCGGCCTCAAGGCCCGCCGCGAGGTCATGGAGGGCGTGGGCGCGTGGTTCGTTCAAATAGGA GACCTGAACACGGTCCACCACCTCTGGCAGTTTGCTAACCTGGAGGAGAGGCGCGAGCGCCGGGAGAAGAGCTGG TCCGTTGAGGGATGGAGCGACACGGTCCACAAGACGGTGCCTCTGATCCAGACCATGAAGTCGAGGATCATGATC GCCATGCCGTGGTCGCCCGTGGCCTAA |
| Gene | >Hirsu2|8245 ATGTTGCGTCCAGGTCTCGCCCGGCGTGCCGCCGCCGCAGCGGCATTCGCCCCTGCTGGCACCAGGGCGCTGGCC ACCACCGCGGCCGCCCTCAGGCTGGCCAAGACGCCCTCGATGGGCGACATCAACCCTTCGTCCGCCTCGGTCGAC TCCTTCAACAGCAAGCAAAAGGCATTCCGGGAGCAGCTGGCAGAGGCGCAGAGGGAGCAGGGAGCACGTGCGTTG GCCGCCCAAAAGGCTTCTGCCTCCTCGTCCGAGAAGTCGGGCCAAGGCTCATCCGAACACGCTGCAGGAGTCACT GCCCAGGCCAAGCAGAAGGAGCAGGACCGCAAGTCGGGCCCCCTCTCCAACCTCATCTACGGCACCAAGGAGGGG AGGGAGATGGAGGCCCAGATCCAGGCCAGCTTCAGCCAGGTCTTGGCCCGGGGCAAGTATGTACACTCCATAGTC CTCCACGAGGTCAAGCCCGACATGGTGGACGAGTACGTCGACCTCATCGGTACATGGTATCCGCAGATCGCCAAC GCGACGGAGAACAAGGTACACTTGGTGGGGAGCTGGCGCACCGAGATAGGTGACTGCGACACGTTTGGTGCGTCC TCGACCACATTCCCAACCCCCCAACGAGCGGCATCGGCGTGGAGACTGACCAAATCCGCAGTGCACATCTGGGAA TACCAGAAGTACGCGGGCTACCACGAGTCCAGATACTCCATCACCCACCATCCCCAGTTTGCCGAGCTAGACCGG AAGCTCAAACGAATGATCAACTCCAAGAGCATCTCTCTCATGCAAGAGTTCTCCTTCTGGCCCACGACCGCCCCT CGAGAGCTGGGCGGAATCTTCGAGCTTCGATCGTACGAGCTGCACCCAGGCAACCTGCTGGAGTGGGAGACACAC TGGAGGCGCGGCCTCAAGGCCCGCCGCGAGGTCATGGAGGGCGTGGGCGCGTGGTTCGTTCAAATAGGAGACCTG AACACGGTCCACCACCTCTGGCAGTTTGCTAACCTGGAGGAGAGGCGCGAGCGCCGGGAGAAGAGCTGGTCCGTT GAGGGATGGAGCGACACGGTCCACAAGACGGTGCCTCTGATCCAGACCATGAAGTCGAGGATCATGATCGCCATG CCGTGGTCGCCCGTGGCCTAA |