© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|8232 |
| Gene name | |
| Location | Contig_523:6644..7325 |
| Strand | + |
| Gene length (bp) | 681 |
| Transcript length (bp) | 612 |
| Coding sequence length (bp) | 612 |
| Protein length (aa) | 204 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13689|YDYA_SCHPO | Uncharacterized protein C11E3.10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11E3.10 PE=4 SV=2 | 3 | 132 | 8.0E-24 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.112 | 0.2758 | 0.1042 | 0.1294 | 0.1492 | 0.0008 | 0.7225 | 0.3593 | 0.4167 | 0.0347 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 26 | 19 |
| 2 | 36 | 53 | 17 |
| 3 | 60 | 79 | 19 |
| 4 | 94 | 111 | 17 |
| Orthofinder run ID | 4 |
| Orthogroup | 4082 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|8232 MRVRLPFAGFFLLLLFLAAYAGLTTFRAGQYVNDKVLHVLTFFLLTAVFYWIVDTNRRRTVNMTLVVCTLILGVG SEFVQSFLPNDRDFDMYDIVANLVGSLAALGLCSWYHRRMLERRRKRKSYHPVPGEDGTDVELGQDHETGIVEGP SQPRTLEEEVDNWDENAADDWDGDVGVAPSSPQAAKAKIPESHDIGDTKKRSD* |
| Coding | >Hirsu2|8232 ATGCGCGTTCGCCTGCCGTTCGCCGGCTTCTTCCTACTGCTCCTGTTCCTCGCCGCCTATGCCGGGCTCACGACC TTCCGTGCGGGCCAGTATGTCAACGACAAGGTCCTGCACGTCCTGACTTTTTTCCTCCTCACCGCCGTCTTCTAC TGGATCGTCGATACGAACCGCCGGCGCACCGTCAACATGACACTCGTCGTCTGTACCCTCATCTTGGGTGTGGGC TCCGAATTCGTCCAAAGCTTCCTTCCAAACGATCGCGACTTCGACATGTACGATATTGTGGCCAACCTTGTGGGA AGCCTTGCAGCTCTGGGTCTCTGTTCCTGGTACCATCGGCGCATGCTCGAGCGGCGAAGGAAGCGCAAGTCGTAC CACCCGGTTCCGGGGGAAGACGGCACAGACGTTGAGCTCGGCCAAGACCACGAGACGGGAATAGTCGAGGGTCCA TCTCAGCCGAGGACGTTGGAGGAGGAGGTGGACAACTGGGACGAGAACGCGGCTGACGATTGGGATGGCGATGTT GGCGTCGCTCCATCCTCACCTCAAGCCGCCAAGGCCAAGATCCCAGAGAGCCATGATATCGGGGACACCAAGAAA CGGTCAGACTGA |
| Transcript | >Hirsu2|8232 ATGCGCGTTCGCCTGCCGTTCGCCGGCTTCTTCCTACTGCTCCTGTTCCTCGCCGCCTATGCCGGGCTCACGACC TTCCGTGCGGGCCAGTATGTCAACGACAAGGTCCTGCACGTCCTGACTTTTTTCCTCCTCACCGCCGTCTTCTAC TGGATCGTCGATACGAACCGCCGGCGCACCGTCAACATGACACTCGTCGTCTGTACCCTCATCTTGGGTGTGGGC TCCGAATTCGTCCAAAGCTTCCTTCCAAACGATCGCGACTTCGACATGTACGATATTGTGGCCAACCTTGTGGGA AGCCTTGCAGCTCTGGGTCTCTGTTCCTGGTACCATCGGCGCATGCTCGAGCGGCGAAGGAAGCGCAAGTCGTAC CACCCGGTTCCGGGGGAAGACGGCACAGACGTTGAGCTCGGCCAAGACCACGAGACGGGAATAGTCGAGGGTCCA TCTCAGCCGAGGACGTTGGAGGAGGAGGTGGACAACTGGGACGAGAACGCGGCTGACGATTGGGATGGCGATGTT GGCGTCGCTCCATCCTCACCTCAAGCCGCCAAGGCCAAGATCCCAGAGAGCCATGATATCGGGGACACCAAGAAA CGGTCAGACTGA |
| Gene | >Hirsu2|8232 ATGCGCGTTCGCCTGCCGTTCGCCGGTGAGTTCCGCAATCATGGCCGCGTGTTGGGAACTGATAATTGGCCTTGC TGATCGCTTCCGCTACCAGGCTTCTTCCTACTGCTCCTGTTCCTCGCCGCCTATGCCGGGCTCACGACCTTCCGT GCGGGCCAGTATGTCAACGACAAGGTCCTGCACGTCCTGACTTTTTTCCTCCTCACCGCCGTCTTCTACTGGATC GTCGATACGAACCGCCGGCGCACCGTCAACATGACACTCGTCGTCTGTACCCTCATCTTGGGTGTGGGCTCCGAA TTCGTCCAAAGCTTCCTTCCAAACGATCGCGACTTCGACATGTACGATATTGTGGCCAACCTTGTGGGAAGCCTT GCAGCTCTGGGTCTCTGTTCCTGGTACCATCGGCGCATGCTCGAGCGGCGAAGGAAGCGCAAGTCGTACCACCCG GTTCCGGGGGAAGACGGCACAGACGTTGAGCTCGGCCAAGACCACGAGACGGGAATAGTCGAGGGTCCATCTCAG CCGAGGACGTTGGAGGAGGAGGTGGACAACTGGGACGAGAACGCGGCTGACGATTGGGATGGCGATGTTGGCGTC GCTCCATCCTCACCTCAAGCCGCCAAGGCCAAGATCCCAGAGAGCCATGATATCGGGGACACCAAGAAACGGTCA GACTGA |