© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|8188 |
| Gene name | |
| Location | Contig_519:1223..2881 |
| Strand | - |
| Gene length (bp) | 1658 |
| Transcript length (bp) | 1458 |
| Coding sequence length (bp) | 1458 |
| Protein length (aa) | 486 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01565 | FAD_binding_4 | FAD binding domain | 8.4E-21 | 55 | 185 |
| PF08031 | BBE | Berberine and berberine like | 1.8E-04 | 434 | 478 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q54H55|Y8969_DICDI | FAD-linked oxidoreductase DDB_G0289697 OS=Dictyostelium discoideum GN=DDB_G0289697 PE=2 SV=1 | 39 | 471 | 5.0E-17 |
| sp|P08159|HDNO_ARTOX | 6-hydroxy-D-nicotine oxidase OS=Arthrobacter oxydans PE=1 SV=2 | 22 | 215 | 1.0E-13 |
| sp|P43485|MCRA_STRLA | Mitomycin radical oxidase OS=Streptomyces lavendulae GN=mcrA PE=1 SV=2 | 61 | 290 | 4.0E-10 |
| sp|D4B1P2|A2372_ARTBC | Uncharacterized FAD-linked oxidoreductase ARB_02372 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_02372 PE=1 SV=1 | 28 | 290 | 4.0E-09 |
| sp|D7UQ40|SOL5_ALTSO | Bifunctional solanapyrone synthase OS=Alternaria solani GN=sol5 PE=1 SV=1 | 55 | 216 | 5.0E-09 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q54H55|Y8969_DICDI | FAD-linked oxidoreductase DDB_G0289697 OS=Dictyostelium discoideum GN=DDB_G0289697 PE=2 SV=1 | 39 | 471 | 5.0E-17 |
| sp|P08159|HDNO_ARTOX | 6-hydroxy-D-nicotine oxidase OS=Arthrobacter oxydans PE=1 SV=2 | 22 | 215 | 1.0E-13 |
| sp|P43485|MCRA_STRLA | Mitomycin radical oxidase OS=Streptomyces lavendulae GN=mcrA PE=1 SV=2 | 61 | 290 | 4.0E-10 |
| sp|D4B1P2|A2372_ARTBC | Uncharacterized FAD-linked oxidoreductase ARB_02372 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_02372 PE=1 SV=1 | 28 | 290 | 4.0E-09 |
| sp|D7UQ40|SOL5_ALTSO | Bifunctional solanapyrone synthase OS=Alternaria solani GN=sol5 PE=1 SV=1 | 55 | 216 | 5.0E-09 |
| sp|Q9FZC7|FOX4_ARATH | Flavin-dependent oxidoreductase FOX4 OS=Arabidopsis thaliana GN=FOX4 PE=2 SV=1 | 81 | 478 | 5.0E-09 |
| sp|P93479|RETO_PAPSO | Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=2 SV=1 | 46 | 198 | 7.0E-09 |
| sp|O06997|YVDP_BACSU | Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 | 35 | 260 | 1.0E-08 |
| sp|P30986|RETO_ESCCA | Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 | 55 | 478 | 6.0E-08 |
| sp|Q796Y5|YGAK_BACSU | Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 | 55 | 478 | 2.0E-07 |
| sp|Q9FUJ3|CKX2_ARATH | Cytokinin dehydrogenase 2 OS=Arabidopsis thaliana GN=CKX2 PE=1 SV=2 | 1 | 245 | 2.0E-06 |
| sp|D4AS41|A7056_ARTBC | Uncharacterized FAD-linked oxidoreductase ARB_02478 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_07056 PE=1 SV=2 | 57 | 198 | 2.0E-06 |
| sp|Q9FZC6|FOX3_ARATH | Flavin-dependent oxidoreductase FOX3 OS=Arabidopsis thaliana GN=FOX3 PE=3 SV=1 | 81 | 208 | 5.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:0036094 | small molecule binding | No |
| GO:0043168 | anion binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 18 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|8188 MLAPVSALLLLASAASGQNGWPGSIANEVNGPSWPQFANATQRWSTYAAPTFNEVFIPRTEADLSTGLKYLSRAN KTWLAKSGGHGYSVTLESVQDAVLINMGNFNRIAMNGSKVTVGTGATFAELVDAVAAAGRELTVGACPCVGAMGA MLGGGLGRLEGLHGLTSDALLSARVALWDGSIVEASKKKNADLFWGIRGAGQNFGIVFEAVFDTYPATNGGMQYS ADLTFGRDKLEAVVNVTNTLLAPELDPALALAISLANDPETLEPVVTVNIVYPGPPDKGRRFRQLYSALSSNYTE QMTAWAKLADVALPGVVLAGCPKGKPHDQYSILTENLSASALASAHDSLSAFARQHPAANGSSIFIETFGQRALK AIPQDSSAFPHRSYFRNAVVFTMTYTDDAVAEAADGWARRMRNTFAQPSVSGYGEWHVYQNYGHGDEPPSALYGY EGWRHERLTRLKNRYDPHGFFDGFHAIPRNLADWS* |
| Coding | >Hirsu2|8188 ATGCTCGCACCCGTTTCTGCCCTGCTGCTCTTGGCGAGCGCAGCGTCCGGCCAGAACGGCTGGCCCGGCTCCATC GCCAACGAGGTGAATGGGCCGTCGTGGCCGCAGTTCGCCAACGCCACCCAGCGCTGGTCGACGTACGCGGCCCCG ACCTTCAACGAGGTCTTCATCCCTCGAACAGAGGCGGACCTGTCGACCGGGCTCAAGTATCTTTCGCGTGCCAAC AAGACGTGGCTGGCCAAGTCGGGCGGCCACGGATATTCCGTCACGCTCGAGTCGGTGCAGGATGCGGTCCTCATC AACATGGGCAACTTCAACCGCATAGCCATGAACGGCTCCAAGGTGACGGTGGGAACGGGCGCGACCTTCGCCGAA CTGGTCGACGCCGTCGCCGCCGCCGGCCGAGAGCTGACCGTCGGCGCGTGTCCATGCGTCGGCGCCATGGGCGCC ATGCTCGGCGGCGGGCTCGGCCGTCTCGAGGGCCTGCACGGGCTGACGAGCGATGCGCTGCTGAGCGCCCGCGTC GCGCTGTGGGACGGCAGCATCGTCGAGGCCTCGAAGAAGAAGAACGCGGACCTCTTCTGGGGCATCCGCGGCGCC GGCCAGAACTTCGGCATCGTCTTCGAGGCCGTCTTCGACACGTACCCGGCCACCAACGGCGGCATGCAGTACAGC GCAGACCTGACCTTCGGCCGCGACAAGCTCGAGGCCGTCGTCAACGTGACCAACACGCTGCTGGCTCCTGAGCTC GACCCGGCCCTGGCCCTGGCCATCTCGCTGGCCAACGACCCGGAGACGCTCGAGCCCGTCGTGACGGTCAACATC GTCTACCCCGGCCCGCCGGACAAGGGCCGGCGGTTCCGGCAGCTGTACTCGGCCCTGAGCTCCAACTACACGGAG CAGATGACGGCGTGGGCCAAGCTGGCCGACGTTGCCCTGCCGGGCGTCGTCTTGGCCGGGTGCCCCAAGGGCAAG CCGCACGACCAGTACAGCATCCTGACGGAGAACCTGTCGGCCTCGGCCCTGGCCTCGGCCCACGACTCGCTCTCG GCCTTTGCGCGGCAGCACCCGGCCGCCAACGGGAGCAGCATCTTCATCGAGACGTTCGGCCAGCGGGCCCTCAAG GCGATCCCGCAGGACAGCTCCGCCTTCCCGCACCGCAGCTACTTCCGCAACGCCGTCGTCTTCACCATGACGTAC ACCGACGATGCCGTGGCCGAGGCCGCCGACGGCTGGGCCCGCCGCATGCGCAACACCTTTGCCCAGCCCAGCGTT TCCGGCTACGGCGAGTGGCACGTCTACCAGAACTACGGACACGGGGACGAGCCGCCGTCGGCCTTGTACGGCTAC GAGGGCTGGCGCCACGAGAGACTGACGAGGCTGAAGAACCGCTATGATCCGCACGGCTTCTTCGACGGATTCCAC GCCATCCCGAGGAATCTCGCAGACTGGTCTTGA |
| Transcript | >Hirsu2|8188 ATGCTCGCACCCGTTTCTGCCCTGCTGCTCTTGGCGAGCGCAGCGTCCGGCCAGAACGGCTGGCCCGGCTCCATC GCCAACGAGGTGAATGGGCCGTCGTGGCCGCAGTTCGCCAACGCCACCCAGCGCTGGTCGACGTACGCGGCCCCG ACCTTCAACGAGGTCTTCATCCCTCGAACAGAGGCGGACCTGTCGACCGGGCTCAAGTATCTTTCGCGTGCCAAC AAGACGTGGCTGGCCAAGTCGGGCGGCCACGGATATTCCGTCACGCTCGAGTCGGTGCAGGATGCGGTCCTCATC AACATGGGCAACTTCAACCGCATAGCCATGAACGGCTCCAAGGTGACGGTGGGAACGGGCGCGACCTTCGCCGAA CTGGTCGACGCCGTCGCCGCCGCCGGCCGAGAGCTGACCGTCGGCGCGTGTCCATGCGTCGGCGCCATGGGCGCC ATGCTCGGCGGCGGGCTCGGCCGTCTCGAGGGCCTGCACGGGCTGACGAGCGATGCGCTGCTGAGCGCCCGCGTC GCGCTGTGGGACGGCAGCATCGTCGAGGCCTCGAAGAAGAAGAACGCGGACCTCTTCTGGGGCATCCGCGGCGCC GGCCAGAACTTCGGCATCGTCTTCGAGGCCGTCTTCGACACGTACCCGGCCACCAACGGCGGCATGCAGTACAGC GCAGACCTGACCTTCGGCCGCGACAAGCTCGAGGCCGTCGTCAACGTGACCAACACGCTGCTGGCTCCTGAGCTC GACCCGGCCCTGGCCCTGGCCATCTCGCTGGCCAACGACCCGGAGACGCTCGAGCCCGTCGTGACGGTCAACATC GTCTACCCCGGCCCGCCGGACAAGGGCCGGCGGTTCCGGCAGCTGTACTCGGCCCTGAGCTCCAACTACACGGAG CAGATGACGGCGTGGGCCAAGCTGGCCGACGTTGCCCTGCCGGGCGTCGTCTTGGCCGGGTGCCCCAAGGGCAAG CCGCACGACCAGTACAGCATCCTGACGGAGAACCTGTCGGCCTCGGCCCTGGCCTCGGCCCACGACTCGCTCTCG GCCTTTGCGCGGCAGCACCCGGCCGCCAACGGGAGCAGCATCTTCATCGAGACGTTCGGCCAGCGGGCCCTCAAG GCGATCCCGCAGGACAGCTCCGCCTTCCCGCACCGCAGCTACTTCCGCAACGCCGTCGTCTTCACCATGACGTAC ACCGACGATGCCGTGGCCGAGGCCGCCGACGGCTGGGCCCGCCGCATGCGCAACACCTTTGCCCAGCCCAGCGTT TCCGGCTACGGCGAGTGGCACGTCTACCAGAACTACGGACACGGGGACGAGCCGCCGTCGGCCTTGTACGGCTAC GAGGGCTGGCGCCACGAGAGACTGACGAGGCTGAAGAACCGCTATGATCCGCACGGCTTCTTCGACGGATTCCAC GCCATCCCGAGGAATCTCGCAGACTGGTCTTGA |
| Gene | >Hirsu2|8188 ATGCTCGCACCCGTTTCTGCCCTGCTGCTCTTGGCGAGCGCAGCGTCCGGCCAGAACGGCTGGCCCGGCTCCATC GCCAACGAGGTGAATGGGCCGTCGTGGCCGCAGTTCGCCAACGCCACCCAGCGCTGGTCGACGTACGCGGCCCCG ACCTTCAACGAGGTCTTCATCCCTCGAACAGAGGCGGACCTGTCGACCGGGGTAAGTCCTGCAGCAAGAGACGGC TCCAGGGACTCGAGGGTAACGGACGGCGCCTATGTTTGCAGCTCAAGTATCTTTCGCGTGCCAACAAGACGTGGC TGGCCAAGTCGGGCGGCCACGGATATTCCGTCACGCTCGAGTCGGTGCAGGATGCGGTCCTCATCAACATGGGCA ACTTCAACCGCATAGCCATGAACGGCTCCAAGGTGACGGTGGGAACGGGCGCGACCTTCGCCGAACTGGTCGACG CCGTCGCCGCCGCCGGCCGAGAGCTGAGTGCGTCAGGCCGGTCCGGTCATGAGAAGGGGTCGAGGACGGGCAGCG AGACTGACGGAGACGAACGGACACAGCCGTCGGCGCGTGTCCATGCGTCGGCGCCATGGGCGCCATGCTCGGCGG CGGGCTCGGCCGTCTCGAGGGCCTGCACGGGCTGACGAGCGATGCGCTGCTGAGCGCCCGCGTCGCGCTGTGGGA CGGCAGCATCGTCGAGGCCTCGAAGAAGAAGAACGCGGACCTCTTCTGGGGCATCCGCGGCGCCGGCCAGAACTT CGGCATCGTCTTCGAGGCCGTCTTCGACACGTACCCGGCCACCAACGGCGGCATGCAGTACAGCGCAGACCTGAC CTTCGGCCGCGACAAGCTCGAGGCCGTCGTCAACGTGACCAACACGCTGCTGGCTCCTGAGCTCGACCCGGCCCT GGCCCTGGCCATCTCGCTGGCCAACGACCCGGAGACGCTCGAGGTGAGTCGAGGCTCGACCCCCGCGGCGCCGGA CTGCGCGGCCAGAACTGACCGGAAGCCAGCCCGTCGTGACGGTCAACATCGTCTACCCCGGCCCGCCGGACAAGG GCCGGCGGTTCCGGCAGCTGTACTCGGCCCTGAGCTCCAACTACACGGAGCAGATGACGGCGTGGGCCAAGCTGG CCGACGTTGCCCTGCCGGGCGTCGTCTTGGCCGGGTGCCCCAAGGGCAAGCCGCACGACCAGTACAGCATCCTGA CGGAGAACCTGTCGGCCTCGGCCCTGGCCTCGGCCCACGACTCGCTCTCGGCCTTTGCGCGGCAGCACCCGGCCG CCAACGGGAGCAGCATCTTCATCGAGACGTTCGGCCAGCGGGCCCTCAAGGCGATCCCGCAGGACAGCTCCGCCT TCCCGCACCGCAGCTACTTCCGCAACGCCGTCGTCTTCACCATGACGTACACCGACGATGCCGTGGCCGAGGCCG CCGACGGCTGGGCCCGCCGCATGCGCAACACCTTTGCCCAGCCCAGCGTTTCCGGCTACGGCGAGTGGCACGTCT ACCAGAACTACGGACACGGGGACGAGCCGCCGTCGGCCTTGTACGGCTACGAGGGCTGGCGCCACGAGAGACTGA CGAGGCTGAAGAACCGCTATGATCCGCACGGCTTCTTCGACGGATTCCACGCCATCCCGAGGAATCTCGCAGACT GGTCTTGA |