Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|8182
Gene name
LocationContig_518:5073..5385
Strand+
Gene length (bp)312
Transcript length (bp)312
Coding sequence length (bp)312
Protein length (aa) 104

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04146 YTH YT521-B-like domain 5.4E-22 13 102

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|B2RR83|YTDC2_MOUSE Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2 PE=1 SV=1 50 101 8.0E-09
sp|Q5R746|YTDC2_PONAB YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2 PE=2 SV=1 50 101 1.0E-08
sp|Q9H6S0|YTDC2_HUMAN Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2 PE=1 SV=2 50 101 2.0E-08
sp|A9LNK9|CPSF_ARATH 30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1 42 101 3.0E-08

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm 0.5359 0.5116 0.1896 0.1819 0.3522 0.2315 0.2643 0.1018 0.4547 0.008

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup407
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|7438
Ophiocordyceps australis map64 (Brazil) OphauB2|7806
Ophiocordyceps camponoti-floridani Ophcf2|07380
Ophiocordyceps camponoti-rufipedis Ophun1|3210
Ophiocordyceps kimflemingae Ophio5|5140
Ophiocordyceps subramaniannii Hirsu2|2237
Ophiocordyceps subramaniannii Hirsu2|7705
Ophiocordyceps subramaniannii Hirsu2|8182 (this protein)
Ophiocordyceps subramaniannii Hirsu2|8426

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|8182
MDATGYAPKGRIIDDSARGTIFLGGRRGGSGEWIDSVRDVSGGKSTGTEEETKTWGNPFKLEWLWIKRLPFYRMR
GLRNPWKSNREVKIARDGTELKPSVGHN*
Coding >Hirsu2|8182
ATGGACGCGACTGGCTATGCGCCAAAGGGCAGAATCATCGACGACTCTGCCAGAGGCACCATTTTTTTGGGGGGC
CGAAGAGGAGGATCTGGAGAGTGGATCGATAGCGTGAGAGATGTGTCTGGCGGCAAGAGCACTGGCACGGAGGAA
GAGACCAAGACTTGGGGCAATCCATTCAAGCTCGAATGGCTGTGGATCAAGCGGCTACCATTCTACCGCATGCGA
GGGCTGAGGAACCCATGGAAATCGAACCGAGAAGTGAAGATTGCAAGAGACGGTACGGAGCTGAAGCCCTCGGTC
GGCCACAATTGA
Transcript >Hirsu2|8182
ATGGACGCGACTGGCTATGCGCCAAAGGGCAGAATCATCGACGACTCTGCCAGAGGCACCATTTTTTTGGGGGGC
CGAAGAGGAGGATCTGGAGAGTGGATCGATAGCGTGAGAGATGTGTCTGGCGGCAAGAGCACTGGCACGGAGGAA
GAGACCAAGACTTGGGGCAATCCATTCAAGCTCGAATGGCTGTGGATCAAGCGGCTACCATTCTACCGCATGCGA
GGGCTGAGGAACCCATGGAAATCGAACCGAGAAGTGAAGATTGCAAGAGACGGTACGGAGCTGAAGCCCTCGGTC
GGCCACAATTGA
Gene >Hirsu2|8182
ATGGACGCGACTGGCTATGCGCCAAAGGGCAGAATCATCGACGACTCTGCCAGAGGCACCATTTTTTTGGGGGGC
CGAAGAGGAGGATCTGGAGAGTGGATCGATAGCGTGAGAGATGTGTCTGGCGGCAAGAGCACTGGCACGGAGGAA
GAGACCAAGACTTGGGGCAATCCATTCAAGCTCGAATGGCTGTGGATCAAGCGGCTACCATTCTACCGCATGCGA
GGGCTGAGGAACCCATGGAAATCGAACCGAGAAGTGAAGATTGCAAGAGACGGTACGGAGCTGAAGCCCTCGGTC
GGCCACAATTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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