© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|8173 |
| Gene name | |
| Location | Contig_516:13826..15807 |
| Strand | - |
| Gene length (bp) | 1981 |
| Transcript length (bp) | 1686 |
| Coding sequence length (bp) | 1686 |
| Protein length (aa) | 562 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane|Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.0862 | 0.0723 | 0.1139 | 0.7591 | 0.0546 | 0.0128 | 0.2261 | 0.6988 | 0.4555 | 0.0021 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 55 | 77 | 22 |
| 2 | 92 | 109 | 17 |
| 3 | 158 | 180 | 22 |
| 4 | 475 | 497 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 5666 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|8173 MAARDDAGKEMRMIVLASAPSAEPDPAATFHRPSRGYAYERFDRRRQLRRLASASLARWLLTVALTAAIYAVLWA YSARPAMTSDKKREFNGLVIGLSIGLGLNIASSLKAMVSELRWWLLSLDGCSPREADLILQSDHLSRLMQLGCTS RRFKVRLFVVVWLLVNLASQVSLATLGLSYNINGSQIAVTAPGAVSIPDMSNIQTTKVVSSPSRSPLSALRYTAN SYGLVALAFGVGYASEIPRPGALYNPDNNVTFCGSNSCRYVFFESSPSNASYYATVATDRYVSTSSSCQSWRVTS GGDGMRPTIVLADANRTEIGPLPALNGPGQTLFMHDPEQPSGDTWSVVTALEASADPWFYRCNVSIGPVVRAVVR EHLVGVNVSRLAAPAIALQGYGASSTTGVDSSTDQIQFQSYPAESWFGRPHRGDVAAMGLTLAQFSCGVLGVVAL SNSNILAPGLVPLKGVMLEIARWDYVHLILGLTVGLQLLLAVASVATANRVQVRGRSHLSMASLLRPVLREVGWR AGAANGKQMASMLGPHTKLSYAPDRGGGGGYRVLDH* |
| Coding | >Hirsu2|8173 ATGGCGGCGCGCGACGATGCCGGCAAGGAGATGCGGATGATCGTCTTGGCGTCGGCGCCGTCGGCCGAGCCGGAC CCGGCCGCCACCTTCCACCGCCCCAGCCGCGGCTACGCCTACGAGCGCTTCGACCGCCGCCGCCAGCTGCGCCGC CTCGCCTCGGCCAGCCTCGCCCGCTGGCTGCTGACCGTCGCCCTGACGGCCGCCATCTACGCCGTCCTGTGGGCC TACTCGGCCCGCCCGGCCATGACGAGCGACAAGAAGCGCGAGTTCAACGGCCTCGTCATCGGCCTGTCCATCGGC CTCGGCCTCAACATCGCCAGCTCCCTCAAGGCCATGGTCAGCGAGCTGCGCTGGTGGCTCCTCAGCCTTGACGGC TGCTCGCCGCGAGAGGCCGATCTCATTCTGCAGAGCGACCACCTCAGCCGTCTGATGCAGCTGGGCTGCACCTCT CGCCGCTTCAAAGTCCGCCTCTTCGTCGTCGTCTGGCTCCTCGTCAACTTGGCTTCCCAAGTTTCCCTGGCCACC CTCGGCCTGTCTTACAACATCAATGGGTCGCAGATTGCCGTCACGGCACCCGGTGCCGTCTCCATCCCCGACATG TCCAACATCCAGACGACCAAAGTCGTCTCATCCCCGTCCCGCTCGCCCCTCTCCGCCCTCCGCTACACCGCCAAC AGCTATGGGCTCGTCGCGCTTGCCTTCGGCGTCGGCTATGCCAGCGAGATCCCCCGGCCCGGGGCGCTGTACAAC CCGGACAACAACGTGACGTTTTGCGGGTCCAACTCGTGTCGATACGTCTTCTTCGAGTCATCGCCCAGTAATGCG TCGTACTATGCCACCGTGGCCACGGACCGCTACGTCTCGACCTCGAGCAGCTGCCAGAGCTGGCGCGTCACCAGC GGCGGCGACGGCATGCGGCCGACCATCGTGCTCGCCGACGCCAACCGGACCGAGATCGGGCCGCTGCCCGCGCTC AACGGCCCGGGCCAGACGCTCTTCATGCACGACCCGGAGCAGCCGTCGGGCGATACGTGGAGCGTCGTGACGGCC CTCGAGGCCTCGGCCGACCCCTGGTTCTACCGCTGCAACGTCAGCATCGGTCCCGTCGTCCGGGCCGTCGTCCGC GAGCACCTGGTCGGCGTCAACGTCTCGAGGCTGGCCGCCCCCGCCATCGCCCTGCAGGGCTACGGCGCGTCGTCG ACGACGGGCGTCGACAGCAGCACCGACCAGATCCAGTTCCAGAGCTACCCGGCCGAGTCGTGGTTCGGACGGCCG CACCGCGGCGACGTGGCGGCCATGGGGCTCACCTTGGCCCAGTTCTCCTGCGGCGTCCTCGGCGTCGTCGCCCTG AGCAACTCCAACATCCTGGCGCCCGGGCTGGTGCCGCTCAAGGGCGTCATGCTGGAGATTGCCCGCTGGGACTAC GTGCACCTGATCCTGGGCCTGACGGTGGGCCTGCAGCTGCTGCTGGCCGTCGCATCGGTCGCGACGGCCAACCGG GTCCAGGTGCGCGGCCGCAGCCACCTGTCCATGGCAAGCCTGCTGCGGCCGGTGCTGCGCGAGGTGGGCTGGCGT GCGGGCGCGGCCAACGGCAAGCAGATGGCGTCGATGCTCGGGCCACACACGAAGCTGTCGTACGCCCCGGACAGA GGAGGCGGGGGCGGCTACCGCGTCCTCGACCACTGA |
| Transcript | >Hirsu2|8173 ATGGCGGCGCGCGACGATGCCGGCAAGGAGATGCGGATGATCGTCTTGGCGTCGGCGCCGTCGGCCGAGCCGGAC CCGGCCGCCACCTTCCACCGCCCCAGCCGCGGCTACGCCTACGAGCGCTTCGACCGCCGCCGCCAGCTGCGCCGC CTCGCCTCGGCCAGCCTCGCCCGCTGGCTGCTGACCGTCGCCCTGACGGCCGCCATCTACGCCGTCCTGTGGGCC TACTCGGCCCGCCCGGCCATGACGAGCGACAAGAAGCGCGAGTTCAACGGCCTCGTCATCGGCCTGTCCATCGGC CTCGGCCTCAACATCGCCAGCTCCCTCAAGGCCATGGTCAGCGAGCTGCGCTGGTGGCTCCTCAGCCTTGACGGC TGCTCGCCGCGAGAGGCCGATCTCATTCTGCAGAGCGACCACCTCAGCCGTCTGATGCAGCTGGGCTGCACCTCT CGCCGCTTCAAAGTCCGCCTCTTCGTCGTCGTCTGGCTCCTCGTCAACTTGGCTTCCCAAGTTTCCCTGGCCACC CTCGGCCTGTCTTACAACATCAATGGGTCGCAGATTGCCGTCACGGCACCCGGTGCCGTCTCCATCCCCGACATG TCCAACATCCAGACGACCAAAGTCGTCTCATCCCCGTCCCGCTCGCCCCTCTCCGCCCTCCGCTACACCGCCAAC AGCTATGGGCTCGTCGCGCTTGCCTTCGGCGTCGGCTATGCCAGCGAGATCCCCCGGCCCGGGGCGCTGTACAAC CCGGACAACAACGTGACGTTTTGCGGGTCCAACTCGTGTCGATACGTCTTCTTCGAGTCATCGCCCAGTAATGCG TCGTACTATGCCACCGTGGCCACGGACCGCTACGTCTCGACCTCGAGCAGCTGCCAGAGCTGGCGCGTCACCAGC GGCGGCGACGGCATGCGGCCGACCATCGTGCTCGCCGACGCCAACCGGACCGAGATCGGGCCGCTGCCCGCGCTC AACGGCCCGGGCCAGACGCTCTTCATGCACGACCCGGAGCAGCCGTCGGGCGATACGTGGAGCGTCGTGACGGCC CTCGAGGCCTCGGCCGACCCCTGGTTCTACCGCTGCAACGTCAGCATCGGTCCCGTCGTCCGGGCCGTCGTCCGC GAGCACCTGGTCGGCGTCAACGTCTCGAGGCTGGCCGCCCCCGCCATCGCCCTGCAGGGCTACGGCGCGTCGTCG ACGACGGGCGTCGACAGCAGCACCGACCAGATCCAGTTCCAGAGCTACCCGGCCGAGTCGTGGTTCGGACGGCCG CACCGCGGCGACGTGGCGGCCATGGGGCTCACCTTGGCCCAGTTCTCCTGCGGCGTCCTCGGCGTCGTCGCCCTG AGCAACTCCAACATCCTGGCGCCCGGGCTGGTGCCGCTCAAGGGCGTCATGCTGGAGATTGCCCGCTGGGACTAC GTGCACCTGATCCTGGGCCTGACGGTGGGCCTGCAGCTGCTGCTGGCCGTCGCATCGGTCGCGACGGCCAACCGG GTCCAGGTGCGCGGCCGCAGCCACCTGTCCATGGCAAGCCTGCTGCGGCCGGTGCTGCGCGAGGTGGGCTGGCGT GCGGGCGCGGCCAACGGCAAGCAGATGGCGTCGATGCTCGGGCCACACACGAAGCTGTCGTACGCCCCGGACAGA GGAGGCGGGGGCGGCTACCGCGTCCTCGACCACTGA |
| Gene | >Hirsu2|8173 ATGGCGGCGCGCGACGATGCCGGCAAGGAGATGCGGATGATCGTCTTGGCGTCGGCGCCGTCGGCCGAGCCGGAC CCGGCCGCCACCTTCCACCGCCCCAGCCGCGGCTACGCCTACGAGCGCTTCGACCGCCGCCGCCAGCTGCGCCGC CTCGCCTCGGCCAGCCTCGCCCGCTGGCTGCTGACCGTCGCCCTGACGGCCGCCATCTACGCCGTCCTGTGGGCC TACTCGGCCCGCCCGGCCATGACGAGCGACAAGAAGCGCGAGTTCAACGGCCTCGTCATCGGCCTGTCCATCGGC CTCGGCCTCAACATCGCCAGCTCCCTCAAGGCCATGGTCAGCGAGCTGCGCTGGTGGCTCCTCAGCCTTGACGGC TGCTCGCCGCGAGAGGTGCCTTTGCCCGGGCCCTTGCCCTGCCCTGCCCCCCTCTCGCTTCTCTCAGCTCGCCAC GTCTTCTCCCGGCCGTCTGGCCAGCCACGTCCATGCCCATCTACACCGCGCCCATGCCCGATGCCCAAGCTGACG GCCCCCCTCCTCACCATGCAGGCCGATCTCATTCTGCAGAGCGACCACCTCAGCCGTCTGATGCAGCTGGGCTGC ACCTCTCGCCGCTTCAAAGTCCGCCTCTTCGTCGTCGTCTGGCTCCTCGTCAACTTGGTGAGCCGCCCCATGGCT CCTCTCCCTCTCGAGCGCACGCTCACGCTCCCTCTGCTGCCGCCGTCCGCCTGCGACCCCAGGCTTCCCAAGTTT CCCTGGCCACCCTCGGCCTGTCTTACAACATCAATGGGTCGCAGATTGCCGTCACGGCACCCGGTGCCGTCTCCA TCCCCGACATGTCCAACATCCAGACGACCAAAGTCGTCTCATCCCCGTCCCGCTCGCCCCTCTCCGCCCTCCGCT ACACCGCCAACAGGTCAGCCGTCCCCTTCATCCGCCGCCAAAGGGGCGAGGAGTCGCTCAAATACTGTACAGCTA TGGGCTCGTCGCGCTTGCCTTCGGCGTCGGCTATGCCAGCGAGATCCCCCGGCCCGGGGCGCTGTACAACCCGGA CAACAACGTGACGTTTTGCGGGTCCAACTCGTGTCGATACGTCTTCTTCGAGTCATCGCCCAGTAATGCGTCGTA CTATGCCACCGTGGCCACGGACCGCTACGTCTCGACCTCGAGCAGCTGCCAGAGCTGGCGCGTCACCAGCGGCGG CGACGGCATGCGGCCGACCATCGTGCTCGCCGACGCCAACCGGACCGAGATCGGGCCGCTGCCCGCGCTCAACGG CCCGGGCCAGACGCTCTTCATGCACGACCCGGAGCAGCCGTCGGGCGATACGTGGAGCGTCGTGACGGCCCTCGA GGCCTCGGCCGACCCCTGGTTCTACCGCTGCAACGTCAGCATCGGTCCCGTCGTCCGGGCCGTCGTCCGCGAGCA CCTGGTCGGCGTCAACGTCTCGAGGCTGGCCGCCCCCGCCATCGCCCTGCAGGGCTACGGCGCGTCGTCGACGAC GGGCGTCGACAGCAGCACCGACCAGATCCAGTTCCAGAGCTACCCGGCCGAGTCGTGGTTCGGACGGCCGCACCG CGGCGACGTGGCGGCCATGGGGCTCACCTTGGCCCAGTTCTCCTGCGGCGTCCTCGGCGTCGTCGCCCTGAGCAA CTCCAACATCCTGGCGCCCGGGCTGGTGCCGCTCAAGGGCGTCATGCTGGAGATTGCCCGCTGGGACTACGTGCA CCTGATCCTGGGCCTGACGGTGGGCCTGCAGCTGCTGCTGGCCGTCGCATCGGTCGCGACGGCCAACCGGGTCCA GGTGCGCGGCCGCAGCCACCTGTCCATGGCAAGCCTGCTGCGGCCGGTGCTGCGCGAGGTGGGCTGGCGTGCGGG CGCGGCCAACGGCAAGCAGATGGCGTCGATGCTCGGGCCACACACGAAGCTGTCGTACGCCCCGGACAGAGGAGG CGGGGGCGGCTACCGCGTCCTCGACCACTGA |