Protein ID | Hirsu2|8173 |
Gene name | |
Location | Contig_516:13826..15807 |
Strand | - |
Gene length (bp) | 1981 |
Transcript length (bp) | 1686 |
Coding sequence length (bp) | 1686 |
Protein length (aa) | 562 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane|Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.0862 | 0.0723 | 0.1139 | 0.7591 | 0.0546 | 0.0128 | 0.2261 | 0.6988 | 0.4555 | 0.0021 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 55 | 77 | 22 |
2 | 92 | 109 | 17 |
3 | 158 | 180 | 22 |
4 | 475 | 497 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 5666 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|8173 MAARDDAGKEMRMIVLASAPSAEPDPAATFHRPSRGYAYERFDRRRQLRRLASASLARWLLTVALTAAIYAVLWA YSARPAMTSDKKREFNGLVIGLSIGLGLNIASSLKAMVSELRWWLLSLDGCSPREADLILQSDHLSRLMQLGCTS RRFKVRLFVVVWLLVNLASQVSLATLGLSYNINGSQIAVTAPGAVSIPDMSNIQTTKVVSSPSRSPLSALRYTAN SYGLVALAFGVGYASEIPRPGALYNPDNNVTFCGSNSCRYVFFESSPSNASYYATVATDRYVSTSSSCQSWRVTS GGDGMRPTIVLADANRTEIGPLPALNGPGQTLFMHDPEQPSGDTWSVVTALEASADPWFYRCNVSIGPVVRAVVR EHLVGVNVSRLAAPAIALQGYGASSTTGVDSSTDQIQFQSYPAESWFGRPHRGDVAAMGLTLAQFSCGVLGVVAL SNSNILAPGLVPLKGVMLEIARWDYVHLILGLTVGLQLLLAVASVATANRVQVRGRSHLSMASLLRPVLREVGWR AGAANGKQMASMLGPHTKLSYAPDRGGGGGYRVLDH* |
Coding | >Hirsu2|8173 ATGGCGGCGCGCGACGATGCCGGCAAGGAGATGCGGATGATCGTCTTGGCGTCGGCGCCGTCGGCCGAGCCGGAC CCGGCCGCCACCTTCCACCGCCCCAGCCGCGGCTACGCCTACGAGCGCTTCGACCGCCGCCGCCAGCTGCGCCGC CTCGCCTCGGCCAGCCTCGCCCGCTGGCTGCTGACCGTCGCCCTGACGGCCGCCATCTACGCCGTCCTGTGGGCC TACTCGGCCCGCCCGGCCATGACGAGCGACAAGAAGCGCGAGTTCAACGGCCTCGTCATCGGCCTGTCCATCGGC CTCGGCCTCAACATCGCCAGCTCCCTCAAGGCCATGGTCAGCGAGCTGCGCTGGTGGCTCCTCAGCCTTGACGGC TGCTCGCCGCGAGAGGCCGATCTCATTCTGCAGAGCGACCACCTCAGCCGTCTGATGCAGCTGGGCTGCACCTCT CGCCGCTTCAAAGTCCGCCTCTTCGTCGTCGTCTGGCTCCTCGTCAACTTGGCTTCCCAAGTTTCCCTGGCCACC CTCGGCCTGTCTTACAACATCAATGGGTCGCAGATTGCCGTCACGGCACCCGGTGCCGTCTCCATCCCCGACATG TCCAACATCCAGACGACCAAAGTCGTCTCATCCCCGTCCCGCTCGCCCCTCTCCGCCCTCCGCTACACCGCCAAC AGCTATGGGCTCGTCGCGCTTGCCTTCGGCGTCGGCTATGCCAGCGAGATCCCCCGGCCCGGGGCGCTGTACAAC CCGGACAACAACGTGACGTTTTGCGGGTCCAACTCGTGTCGATACGTCTTCTTCGAGTCATCGCCCAGTAATGCG TCGTACTATGCCACCGTGGCCACGGACCGCTACGTCTCGACCTCGAGCAGCTGCCAGAGCTGGCGCGTCACCAGC GGCGGCGACGGCATGCGGCCGACCATCGTGCTCGCCGACGCCAACCGGACCGAGATCGGGCCGCTGCCCGCGCTC AACGGCCCGGGCCAGACGCTCTTCATGCACGACCCGGAGCAGCCGTCGGGCGATACGTGGAGCGTCGTGACGGCC CTCGAGGCCTCGGCCGACCCCTGGTTCTACCGCTGCAACGTCAGCATCGGTCCCGTCGTCCGGGCCGTCGTCCGC GAGCACCTGGTCGGCGTCAACGTCTCGAGGCTGGCCGCCCCCGCCATCGCCCTGCAGGGCTACGGCGCGTCGTCG ACGACGGGCGTCGACAGCAGCACCGACCAGATCCAGTTCCAGAGCTACCCGGCCGAGTCGTGGTTCGGACGGCCG CACCGCGGCGACGTGGCGGCCATGGGGCTCACCTTGGCCCAGTTCTCCTGCGGCGTCCTCGGCGTCGTCGCCCTG AGCAACTCCAACATCCTGGCGCCCGGGCTGGTGCCGCTCAAGGGCGTCATGCTGGAGATTGCCCGCTGGGACTAC GTGCACCTGATCCTGGGCCTGACGGTGGGCCTGCAGCTGCTGCTGGCCGTCGCATCGGTCGCGACGGCCAACCGG GTCCAGGTGCGCGGCCGCAGCCACCTGTCCATGGCAAGCCTGCTGCGGCCGGTGCTGCGCGAGGTGGGCTGGCGT GCGGGCGCGGCCAACGGCAAGCAGATGGCGTCGATGCTCGGGCCACACACGAAGCTGTCGTACGCCCCGGACAGA GGAGGCGGGGGCGGCTACCGCGTCCTCGACCACTGA |
Transcript | >Hirsu2|8173 ATGGCGGCGCGCGACGATGCCGGCAAGGAGATGCGGATGATCGTCTTGGCGTCGGCGCCGTCGGCCGAGCCGGAC CCGGCCGCCACCTTCCACCGCCCCAGCCGCGGCTACGCCTACGAGCGCTTCGACCGCCGCCGCCAGCTGCGCCGC CTCGCCTCGGCCAGCCTCGCCCGCTGGCTGCTGACCGTCGCCCTGACGGCCGCCATCTACGCCGTCCTGTGGGCC TACTCGGCCCGCCCGGCCATGACGAGCGACAAGAAGCGCGAGTTCAACGGCCTCGTCATCGGCCTGTCCATCGGC CTCGGCCTCAACATCGCCAGCTCCCTCAAGGCCATGGTCAGCGAGCTGCGCTGGTGGCTCCTCAGCCTTGACGGC TGCTCGCCGCGAGAGGCCGATCTCATTCTGCAGAGCGACCACCTCAGCCGTCTGATGCAGCTGGGCTGCACCTCT CGCCGCTTCAAAGTCCGCCTCTTCGTCGTCGTCTGGCTCCTCGTCAACTTGGCTTCCCAAGTTTCCCTGGCCACC CTCGGCCTGTCTTACAACATCAATGGGTCGCAGATTGCCGTCACGGCACCCGGTGCCGTCTCCATCCCCGACATG TCCAACATCCAGACGACCAAAGTCGTCTCATCCCCGTCCCGCTCGCCCCTCTCCGCCCTCCGCTACACCGCCAAC AGCTATGGGCTCGTCGCGCTTGCCTTCGGCGTCGGCTATGCCAGCGAGATCCCCCGGCCCGGGGCGCTGTACAAC CCGGACAACAACGTGACGTTTTGCGGGTCCAACTCGTGTCGATACGTCTTCTTCGAGTCATCGCCCAGTAATGCG TCGTACTATGCCACCGTGGCCACGGACCGCTACGTCTCGACCTCGAGCAGCTGCCAGAGCTGGCGCGTCACCAGC GGCGGCGACGGCATGCGGCCGACCATCGTGCTCGCCGACGCCAACCGGACCGAGATCGGGCCGCTGCCCGCGCTC AACGGCCCGGGCCAGACGCTCTTCATGCACGACCCGGAGCAGCCGTCGGGCGATACGTGGAGCGTCGTGACGGCC CTCGAGGCCTCGGCCGACCCCTGGTTCTACCGCTGCAACGTCAGCATCGGTCCCGTCGTCCGGGCCGTCGTCCGC GAGCACCTGGTCGGCGTCAACGTCTCGAGGCTGGCCGCCCCCGCCATCGCCCTGCAGGGCTACGGCGCGTCGTCG ACGACGGGCGTCGACAGCAGCACCGACCAGATCCAGTTCCAGAGCTACCCGGCCGAGTCGTGGTTCGGACGGCCG CACCGCGGCGACGTGGCGGCCATGGGGCTCACCTTGGCCCAGTTCTCCTGCGGCGTCCTCGGCGTCGTCGCCCTG AGCAACTCCAACATCCTGGCGCCCGGGCTGGTGCCGCTCAAGGGCGTCATGCTGGAGATTGCCCGCTGGGACTAC GTGCACCTGATCCTGGGCCTGACGGTGGGCCTGCAGCTGCTGCTGGCCGTCGCATCGGTCGCGACGGCCAACCGG GTCCAGGTGCGCGGCCGCAGCCACCTGTCCATGGCAAGCCTGCTGCGGCCGGTGCTGCGCGAGGTGGGCTGGCGT GCGGGCGCGGCCAACGGCAAGCAGATGGCGTCGATGCTCGGGCCACACACGAAGCTGTCGTACGCCCCGGACAGA GGAGGCGGGGGCGGCTACCGCGTCCTCGACCACTGA |
Gene | >Hirsu2|8173 ATGGCGGCGCGCGACGATGCCGGCAAGGAGATGCGGATGATCGTCTTGGCGTCGGCGCCGTCGGCCGAGCCGGAC CCGGCCGCCACCTTCCACCGCCCCAGCCGCGGCTACGCCTACGAGCGCTTCGACCGCCGCCGCCAGCTGCGCCGC CTCGCCTCGGCCAGCCTCGCCCGCTGGCTGCTGACCGTCGCCCTGACGGCCGCCATCTACGCCGTCCTGTGGGCC TACTCGGCCCGCCCGGCCATGACGAGCGACAAGAAGCGCGAGTTCAACGGCCTCGTCATCGGCCTGTCCATCGGC CTCGGCCTCAACATCGCCAGCTCCCTCAAGGCCATGGTCAGCGAGCTGCGCTGGTGGCTCCTCAGCCTTGACGGC TGCTCGCCGCGAGAGGTGCCTTTGCCCGGGCCCTTGCCCTGCCCTGCCCCCCTCTCGCTTCTCTCAGCTCGCCAC GTCTTCTCCCGGCCGTCTGGCCAGCCACGTCCATGCCCATCTACACCGCGCCCATGCCCGATGCCCAAGCTGACG GCCCCCCTCCTCACCATGCAGGCCGATCTCATTCTGCAGAGCGACCACCTCAGCCGTCTGATGCAGCTGGGCTGC ACCTCTCGCCGCTTCAAAGTCCGCCTCTTCGTCGTCGTCTGGCTCCTCGTCAACTTGGTGAGCCGCCCCATGGCT CCTCTCCCTCTCGAGCGCACGCTCACGCTCCCTCTGCTGCCGCCGTCCGCCTGCGACCCCAGGCTTCCCAAGTTT CCCTGGCCACCCTCGGCCTGTCTTACAACATCAATGGGTCGCAGATTGCCGTCACGGCACCCGGTGCCGTCTCCA TCCCCGACATGTCCAACATCCAGACGACCAAAGTCGTCTCATCCCCGTCCCGCTCGCCCCTCTCCGCCCTCCGCT ACACCGCCAACAGGTCAGCCGTCCCCTTCATCCGCCGCCAAAGGGGCGAGGAGTCGCTCAAATACTGTACAGCTA TGGGCTCGTCGCGCTTGCCTTCGGCGTCGGCTATGCCAGCGAGATCCCCCGGCCCGGGGCGCTGTACAACCCGGA CAACAACGTGACGTTTTGCGGGTCCAACTCGTGTCGATACGTCTTCTTCGAGTCATCGCCCAGTAATGCGTCGTA CTATGCCACCGTGGCCACGGACCGCTACGTCTCGACCTCGAGCAGCTGCCAGAGCTGGCGCGTCACCAGCGGCGG CGACGGCATGCGGCCGACCATCGTGCTCGCCGACGCCAACCGGACCGAGATCGGGCCGCTGCCCGCGCTCAACGG CCCGGGCCAGACGCTCTTCATGCACGACCCGGAGCAGCCGTCGGGCGATACGTGGAGCGTCGTGACGGCCCTCGA GGCCTCGGCCGACCCCTGGTTCTACCGCTGCAACGTCAGCATCGGTCCCGTCGTCCGGGCCGTCGTCCGCGAGCA CCTGGTCGGCGTCAACGTCTCGAGGCTGGCCGCCCCCGCCATCGCCCTGCAGGGCTACGGCGCGTCGTCGACGAC GGGCGTCGACAGCAGCACCGACCAGATCCAGTTCCAGAGCTACCCGGCCGAGTCGTGGTTCGGACGGCCGCACCG CGGCGACGTGGCGGCCATGGGGCTCACCTTGGCCCAGTTCTCCTGCGGCGTCCTCGGCGTCGTCGCCCTGAGCAA CTCCAACATCCTGGCGCCCGGGCTGGTGCCGCTCAAGGGCGTCATGCTGGAGATTGCCCGCTGGGACTACGTGCA CCTGATCCTGGGCCTGACGGTGGGCCTGCAGCTGCTGCTGGCCGTCGCATCGGTCGCGACGGCCAACCGGGTCCA GGTGCGCGGCCGCAGCCACCTGTCCATGGCAAGCCTGCTGCGGCCGGTGCTGCGCGAGGTGGGCTGGCGTGCGGG CGCGGCCAACGGCAAGCAGATGGCGTCGATGCTCGGGCCACACACGAAGCTGTCGTACGCCCCGGACAGAGGAGG CGGGGGCGGCTACCGCGTCCTCGACCACTGA |