© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|815 |
| Gene name | |
| Location | Contig_117:17672..19414 |
| Strand | - |
| Gene length (bp) | 1742 |
| Transcript length (bp) | 1335 |
| Coding sequence length (bp) | 1335 |
| Protein length (aa) | 445 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05730 | CFEM | CFEM domain | 3.9E-09 | 41 | 101 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 22 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 111 | 128 | 17 |
| 2 | 147 | 169 | 22 |
| 3 | 196 | 218 | 22 |
| 4 | 225 | 247 | 22 |
| 5 | 272 | 294 | 22 |
| 6 | 307 | 329 | 22 |
| 7 | 349 | 371 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|815 MRLGLRTCLVAAAVFAGLCECFDHEFFIRATDTSPLAAAPAKYPACSRDCLSQKFAASSCNDAACLCGNRTFEKD LKDCVMPVCPIYDSMAVKNLTDKACHRPRRDKSGKFSALSIALCSITYVLVAVRIVYKQFFGHRRRLSVDDWIIM VTVAIGIPCTVLNVHGLAANGIGKDVWTLQPQTVSNFQLYFYVLEIFYVTMMALIRVALCFFYLHIFPGVRIRRV LWGTVVFNALFGFAAAIATIFQCTPIRYFWVMYKERFPRGHCINMNVLGWVHGALNIAINLWLISIALNQVRKLD LHWKKKLSVSLMFLTGIFDTVVSVLRLHSLIHFANSWNPTWDQFGVAWWSTIEIEVGLLCTCMPTLRIILVRMFP RLLGTDRSSKESPNPGSDASGGIMVQKQIRVDSVDNHADPDAAAQDRAKLWELGSEGAAAEGPHAEAYS* |
| Coding | >Hirsu2|815 ATGAGGCTTGGACTGAGGACATGTCTTGTCGCCGCTGCCGTCTTCGCCGGCCTCTGCGAGTGCTTCGACCATGAG TTCTTCATCCGGGCCACCGACACGTCTCCGCTTGCCGCGGCGCCGGCCAAGTATCCCGCCTGCTCCCGCGACTGC CTGTCGCAGAAATTCGCGGCCTCGAGCTGCAATGACGCGGCATGCTTGTGTGGCAATCGGACCTTCGAGAAGGAC CTCAAGGATTGCGTCATGCCTGTGTGCCCTATCTACGATTCCATGGCCGTCAAGAACCTGACGGACAAGGCCTGC CACCGGCCTCGGCGGGACAAGAGCGGCAAGTTCTCGGCACTGAGCATCGCGCTGTGCTCCATCACGTACGTGCTG GTGGCGGTGCGGATCGTGTACAAGCAGTTCTTCGGGCACCGGCGGCGGCTGAGCGTCGACGACTGGATCATCATG GTGACGGTGGCCATCGGCATCCCCTGCACCGTCCTCAACGTGCACGGGCTGGCGGCCAACGGCATCGGCAAGGAC GTCTGGACGCTGCAGCCGCAGACGGTCAGCAACTTCCAGCTCTACTTCTACGTGCTCGAGATCTTCTACGTCACC ATGATGGCCCTCATCCGCGTCGCCCTCTGCTTCTTCTACCTGCACATCTTCCCGGGCGTCCGCATCCGGCGCGTG CTCTGGGGCACCGTCGTCTTCAACGCGCTCTTCGGCTTCGCCGCCGCCATCGCCACCATCTTCCAGTGCACGCCC ATCCGCTACTTCTGGGTCATGTACAAGGAGCGCTTCCCGCGCGGCCACTGCATCAACATGAACGTCCTCGGCTGG GTCCACGGCGCGCTCAACATCGCCATCAACCTGTGGCTCATCTCCATCGCCCTGAACCAGGTGCGCAAGCTCGAC CTCCACTGGAAGAAGAAGCTGAGCGTCAGCCTCATGTTCCTGACGGGCATCTTCGACACGGTCGTGTCCGTCCTG CGGCTTCATTCCCTCATCCACTTCGCCAACTCGTGGAACCCGACGTGGGACCAGTTCGGCGTCGCCTGGTGGTCC ACCATCGAGATCGAGGTCGGCCTGCTCTGCACCTGCATGCCGACCCTGCGCATCATCCTCGTCCGCATGTTCCCC CGCCTGCTCGGCACCGACCGGAGCTCCAAGGAGTCGCCCAACCCGGGCTCCGACGCCAGCGGCGGCATCATGGTG CAGAAGCAGATCCGCGTCGACAGCGTCGACAACCACGCCGACCCCGACGCCGCCGCCCAGGACCGGGCCAAGCTG TGGGAGCTCGGCTCCGAAGGGGCTGCCGCCGAGGGACCCCACGCCGAGGCGTACTCGTAG |
| Transcript | >Hirsu2|815 ATGAGGCTTGGACTGAGGACATGTCTTGTCGCCGCTGCCGTCTTCGCCGGCCTCTGCGAGTGCTTCGACCATGAG TTCTTCATCCGGGCCACCGACACGTCTCCGCTTGCCGCGGCGCCGGCCAAGTATCCCGCCTGCTCCCGCGACTGC CTGTCGCAGAAATTCGCGGCCTCGAGCTGCAATGACGCGGCATGCTTGTGTGGCAATCGGACCTTCGAGAAGGAC CTCAAGGATTGCGTCATGCCTGTGTGCCCTATCTACGATTCCATGGCCGTCAAGAACCTGACGGACAAGGCCTGC CACCGGCCTCGGCGGGACAAGAGCGGCAAGTTCTCGGCACTGAGCATCGCGCTGTGCTCCATCACGTACGTGCTG GTGGCGGTGCGGATCGTGTACAAGCAGTTCTTCGGGCACCGGCGGCGGCTGAGCGTCGACGACTGGATCATCATG GTGACGGTGGCCATCGGCATCCCCTGCACCGTCCTCAACGTGCACGGGCTGGCGGCCAACGGCATCGGCAAGGAC GTCTGGACGCTGCAGCCGCAGACGGTCAGCAACTTCCAGCTCTACTTCTACGTGCTCGAGATCTTCTACGTCACC ATGATGGCCCTCATCCGCGTCGCCCTCTGCTTCTTCTACCTGCACATCTTCCCGGGCGTCCGCATCCGGCGCGTG CTCTGGGGCACCGTCGTCTTCAACGCGCTCTTCGGCTTCGCCGCCGCCATCGCCACCATCTTCCAGTGCACGCCC ATCCGCTACTTCTGGGTCATGTACAAGGAGCGCTTCCCGCGCGGCCACTGCATCAACATGAACGTCCTCGGCTGG GTCCACGGCGCGCTCAACATCGCCATCAACCTGTGGCTCATCTCCATCGCCCTGAACCAGGTGCGCAAGCTCGAC CTCCACTGGAAGAAGAAGCTGAGCGTCAGCCTCATGTTCCTGACGGGCATCTTCGACACGGTCGTGTCCGTCCTG CGGCTTCATTCCCTCATCCACTTCGCCAACTCGTGGAACCCGACGTGGGACCAGTTCGGCGTCGCCTGGTGGTCC ACCATCGAGATCGAGGTCGGCCTGCTCTGCACCTGCATGCCGACCCTGCGCATCATCCTCGTCCGCATGTTCCCC CGCCTGCTCGGCACCGACCGGAGCTCCAAGGAGTCGCCCAACCCGGGCTCCGACGCCAGCGGCGGCATCATGGTG CAGAAGCAGATCCGCGTCGACAGCGTCGACAACCACGCCGACCCCGACGCCGCCGCCCAGGACCGGGCCAAGCTG TGGGAGCTCGGCTCCGAAGGGGCTGCCGCCGAGGGACCCCACGCCGAGGCGTACTCGTAG |
| Gene | >Hirsu2|815 ATGAGGCTTGGACTGAGGACATGTCTTGTCGCCGCTGCCGTCTTCGCCGGCCTCTGCGAGTGCTTCGACCATGAG TTCTTCATCCGGGCCACCGACACGTCTCCGCTTGCCGCGGCGCCGGCCAAGTATCCCGCCTGCTCCGTAAGGGCT CTTCTGCTTCCTCGACGGGGGGATTGCGTGTGTGTTGATGATGGCTTGTCTGCCCCTTGTCCAGCGCGACTGCCT GTCGCAGAAATTCGCGGCCTCGAGCTGCAATGACGCGGCATGCTTGTGTGGCAATCGGACCTTCGAGAAGGACCT CAAGGATTGCGTCATGCCTGTGTGCCCTATCTACGATTCCATGGGTATGTCCTCTCTTGCTCCTTGCTCACACTT CCGCGCGACGCCTTGTTTTTTTCTCTTTCTGTCATTCCATCTTGCTTGGCGTGTCGGTATCCAACCTCGCCTTTA TTGTCTCTCTGAAAGTCCGCTTTGACACCGGGACGTGGTGAGGCTGACGGGAAGAAACCGACACTGCAGCCGTCA AGAACCTGACGGACAAGGCCTGCCACCGGCCTCGGCGGGACAAGAGCGGCAAGTTCTCGGCACTGAGCATCGCGC TGTGCTCCATCACGTACGTGCTGGTGGCGGTGCGGATCGTGTACAAGCAGTTCTTCGGGCACCGGCGGCGGCTGA GCGTCGACGACTGGATCATCATGGTGACGGTGGCCATCGGCATCCCCTGCACCGTCCTCAACGTGCACGGGCTGG CGGCCAACGGCATCGGCAAGGACGTCTGGACGCTGCAGCCGCAGACGGTCAGCAACTTCCAGCTCTACTTCTACG TGCTCGAGATCTTCTACGTCACCATGATGGCCCTCATCCGCGTCGCCCTCTGCTTCTTCTACCTGCACATCTTCC CGGGCGTCCGCATCCGGCGCGTGCTCTGGGGCACCGTCGTCTTCAACGCGCTCTTCGGCTTCGCCGCCGCCATCG CCACCATCTTCCAGTGCACGCCCATCCGCTACTTCTGGGTCATGTACAAGGAGCGCTTCCCGCGCGGCCACTGCA TCAACATGAACGTCCTCGGCTGGGTCCACGGCGCGCTCAACATCGCCATCAACCTGTGGCTCATCTCCATCGCCC TGAACCAGGTGCGCAAGCTCGACCTCCACTGGAAGAAGAAGCTGAGCGTCAGCCTCATGTTCCTGACGGGCATCT TGTGAGTCGACCGCGAGAGAGAGAAAGAGAGAGAGAGGAGAAAGGGGGAAGAGAGAAAGGGAGAGACAGAGAGAA TCGTTGGTCGTCTGTCGACGAAGCGAGCGACGTCGATGTCGGGGAGAACGCGCGATCGGCTGACCACATGGCGGC TCACAAACAGCGACACGGTCGTGTCCGTCCTGCGGCTTCATTCCCTCATCCACTTCGCCAACTCGTGGAACCCGA CGTGGGACCAGTTCGGCGTCGCCTGGTGGTCCACCATCGAGATCGAGGTCGGCCTGCTCTGCACCTGCATGCCGA CCCTGCGCATCATCCTCGTCCGCATGTTCCCCCGCCTGCTCGGCACCGACCGGAGCTCCAAGGAGTCGCCCAACC CGGGCTCCGACGCCAGCGGCGGCATCATGGTGCAGAAGCAGATCCGCGTCGACAGCGTCGACAACCACGCCGACC CCGACGCCGCCGCCCAGGACCGGGCCAAGCTGTGGGAGCTCGGCTCCGAAGGGGCTGCCGCCGAGGGACCCCACG CCGAGGCGTACTCGTAG |