© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|8116 |
| Gene name | |
| Location | Contig_51:23931..24998 |
| Strand | + |
| Gene length (bp) | 1067 |
| Transcript length (bp) | 1017 |
| Coding sequence length (bp) | 1017 |
| Protein length (aa) | 339 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13649 | Methyltransf_25 | Methyltransferase domain | 2.2E-15 | 49 | 137 |
| PF13649 | Methyltransf_25 | Methyltransferase domain | 2.2E-07 | 272 | 337 |
| PF08241 | Methyltransf_11 | Methyltransferase domain | 1.4E-12 | 50 | 141 |
| PF08241 | Methyltransf_11 | Methyltransferase domain | 3.5E-07 | 273 | 337 |
| PF13489 | Methyltransf_23 | Methyltransferase domain | 1.8E-15 | 31 | 157 |
| PF13847 | Methyltransf_31 | Methyltransferase domain | 1.5E-09 | 46 | 160 |
| PF08242 | Methyltransf_12 | Methyltransferase domain | 4.0E-08 | 50 | 139 |
| PF02353 | CMAS | Mycolic acid cyclopropane synthetase | 1.1E-04 | 48 | 166 |
| PF05401 | NodS | Nodulation protein S (NodS) | 2.0E-05 | 46 | 143 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|B8ISV4|TAM_METNO | Trans-aconitate 2-methyltransferase OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=tam PE=3 SV=1 | 47 | 154 | 7.0E-07 |
| sp|B0UPF4|TAM_METS4 | Trans-aconitate 2-methyltransferase OS=Methylobacterium sp. (strain 4-46) GN=tam PE=3 SV=1 | 47 | 154 | 8.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | Yes |
| GO:0009877 | nodulation | Yes |
| GO:0009312 | oligosaccharide biosynthetic process | Yes |
| GO:0008168 | methyltransferase activity | Yes |
| GO:0016740 | transferase activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0016741 | transferase activity, transferring one-carbon groups | No |
| GO:0044419 | interspecies interaction between organisms | No |
| GO:0005975 | carbohydrate metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0044403 | symbiont process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0009311 | oligosaccharide metabolic process | No |
| GO:0051704 | multi-organism process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0008150 | biological_process | No |
| GO:0016051 | carbohydrate biosynthetic process | No |
| GO:0008152 | metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|8116 MAVGDASLVGAEVLFDQISEAYEDAYGDNEGLKKALEQLREFHDVKASVLDVGCGPGGPASYLAKLGFEMTGFDV SQNMVDTCRKNVPGNFFKEDMAAFSPKKPFDAIVALYSMFQLSHSATYSVLLKIASWLRPGGTFVLGTIPAEDLV EEKSLLRASDYVERYVTIFMGKPIANTLITTKGWLDILQRAGFLIRNVDRYNFNVKGAVPERHMFITCQRSNLDP LLGPFPLPMFRRAPHSLSEDAWKPFAERLTRHEFDAVVKAVESNKDVLDIGSGHGELPIAIAEKFGKAYAIEPNG DRNEVLVKNGKHAPVEIRQGSAESLPYSDKQFDAAVAL* |
| Coding | >Hirsu2|8116 ATGGCTGTGGGAGATGCTTCTCTTGTGGGCGCCGAGGTCCTCTTTGACCAAATCTCTGAGGCCTACGAAGACGCA TATGGTGATAATGAGGGTCTGAAGAAAGCTCTGGAACAGCTGAGAGAGTTTCACGATGTCAAAGCAAGCGTCTTG GACGTAGGGTGCGGCCCTGGAGGCCCAGCATCCTACCTGGCGAAGTTGGGATTCGAGATGACGGGCTTTGATGTC TCGCAGAATATGGTTGACACTTGCCGCAAGAATGTTCCGGGCAACTTCTTCAAGGAAGACATGGCAGCTTTTAGT CCGAAAAAGCCATTCGACGCCATTGTGGCCTTGTACTCTATGTTCCAGCTTTCACATAGCGCTACGTACTCGGTT CTTTTGAAGATCGCATCCTGGCTGCGCCCCGGTGGGACCTTTGTCCTGGGTACGATCCCCGCCGAGGATCTAGTG GAAGAAAAGAGTCTTCTCAGAGCGTCGGATTACGTGGAGCGATACGTTACGATATTCATGGGCAAGCCAATCGCC AACACGCTGATCACCACCAAAGGCTGGCTCGACATTCTGCAGCGGGCTGGATTCCTCATTCGAAACGTCGACCGT TACAACTTCAACGTCAAAGGCGCTGTTCCAGAAAGGCACATGTTCATCACTTGTCAGAGGTCGAACTTGGATCCC CTTTTGGGCCCGTTCCCTTTGCCCATGTTTCGGCGCGCGCCGCACTCGCTTAGTGAAGATGCCTGGAAGCCCTTC GCAGAGAGGCTGACTCGACACGAGTTCGACGCCGTCGTCAAGGCCGTCGAGTCGAACAAGGATGTTCTCGACATT GGCAGCGGACATGGCGAACTTCCGATTGCCATTGCCGAAAAATTCGGCAAAGCCTACGCGATCGAGCCCAATGGC GACAGAAACGAGGTGCTCGTCAAGAACGGCAAACACGCGCCGGTTGAAATAAGACAGGGGTCGGCTGAAAGCCTG CCGTATAGCGACAAGCAGTTTGACGCGGCCGTAGCTCTCTGA |
| Transcript | >Hirsu2|8116 ATGGCTGTGGGAGATGCTTCTCTTGTGGGCGCCGAGGTCCTCTTTGACCAAATCTCTGAGGCCTACGAAGACGCA TATGGTGATAATGAGGGTCTGAAGAAAGCTCTGGAACAGCTGAGAGAGTTTCACGATGTCAAAGCAAGCGTCTTG GACGTAGGGTGCGGCCCTGGAGGCCCAGCATCCTACCTGGCGAAGTTGGGATTCGAGATGACGGGCTTTGATGTC TCGCAGAATATGGTTGACACTTGCCGCAAGAATGTTCCGGGCAACTTCTTCAAGGAAGACATGGCAGCTTTTAGT CCGAAAAAGCCATTCGACGCCATTGTGGCCTTGTACTCTATGTTCCAGCTTTCACATAGCGCTACGTACTCGGTT CTTTTGAAGATCGCATCCTGGCTGCGCCCCGGTGGGACCTTTGTCCTGGGTACGATCCCCGCCGAGGATCTAGTG GAAGAAAAGAGTCTTCTCAGAGCGTCGGATTACGTGGAGCGATACGTTACGATATTCATGGGCAAGCCAATCGCC AACACGCTGATCACCACCAAAGGCTGGCTCGACATTCTGCAGCGGGCTGGATTCCTCATTCGAAACGTCGACCGT TACAACTTCAACGTCAAAGGCGCTGTTCCAGAAAGGCACATGTTCATCACTTGTCAGAGGTCGAACTTGGATCCC CTTTTGGGCCCGTTCCCTTTGCCCATGTTTCGGCGCGCGCCGCACTCGCTTAGTGAAGATGCCTGGAAGCCCTTC GCAGAGAGGCTGACTCGACACGAGTTCGACGCCGTCGTCAAGGCCGTCGAGTCGAACAAGGATGTTCTCGACATT GGCAGCGGACATGGCGAACTTCCGATTGCCATTGCCGAAAAATTCGGCAAAGCCTACGCGATCGAGCCCAATGGC GACAGAAACGAGGTGCTCGTCAAGAACGGCAAACACGCGCCGGTTGAAATAAGACAGGGGTCGGCTGAAAGCCTG CCGTATAGCGACAAGCAGTTTGACGCGGCCGTAGCTCTCTGA |
| Gene | >Hirsu2|8116 ATGGCTGTGGGAGATGCTTCTCTTGTGGGCGCCGAGGTCCTCTTTGACCAAATCTCTGAGGCCTACGAAGACGCA TATGGTGATAATGAGGGTCTGAAGAAAGCTCTGGAACAGCTGAGAGAGTTTCACGATGTCAAAGCAAGCGTCTTG GACGTAGGGTGCGGCCCTGGAGGCCCAGCATCCTACCTGGCGAAGTTGGGATTCGAGATGACGGGCTTTGATGTC TCGCAGAATATGGTTGACACTTGCCGCAAGAATGTTCCGGGCAACTTCTTCAAGGAAGACATGGCAGCTTTTAGT CCGAAAAAGCCATTCGACGCCATTGTGGCCTTGTACTCTATGTTCCAGCTTTCACATAGCGCTACGTACTCGGTT CTTTTGAAGATCGCATCCTGGCTGCGCCCCGGTGGGACCTTTGTCCTGGGTACGATCCCCGCCGAGGATCTAGTG GAAGAAAAGAGTCTTCTCAGAGCGTCGGATTACGTGGAGCGATACGTTACGATATTCATGGGCAAGCCAATCGCC AACACGCTGATCACCACCAAAGGCTGGCTCGACATTCTGCAGCGGGCTGGATTCCTCATTCGAAACGTCGACCGT TACAACTTCAACGTCAAAGGCGCTGTTCCAGAAAGGCACATGTTCATCACTTGTCAGAGGTCGAACTTGGATCCC CTTTTGGGCCCGTTCCCTTTGCCCATGTTTCGGCGCGCGCCGCACTCGCTTAGTGAAGATGCCTGGAAGCCCTTC GCAGAGAGGCTGACTCGACACGAGTTCGACGCCGTCGTCAAGGCCGTCGAGTCGAACAAGGATGTTCTCGACATT GGCAGCGGACATGGCGGTGCGTTCCACTAGAGGGTTGTATAGAAGCGGTGGCTGACGCTCGACCAGAACTTCCGA TTGCCATTGCCGAAAAATTCGGCAAAGCCTACGCGATCGAGCCCAATGGCGACAGAAACGAGGTGCTCGTCAAGA ACGGCAAACACGCGCCGGTTGAAATAAGACAGGGGTCGGCTGAAAGCCTGCCGTATAGCGACAAGCAGTTTGACG CGGCCGTAGCTCTCTGA |