© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|81 |
| Gene name | |
| Location | Contig_101:17634..18429 |
| Strand | - |
| Gene length (bp) | 795 |
| Transcript length (bp) | 795 |
| Coding sequence length (bp) | 795 |
| Protein length (aa) | 265 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13095 | FTA2 | Kinetochore Sim4 complex subunit FTA2 | 1.9E-29 | 21 | 202 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Nuclear localization signal | 0.5824 | 0.6154 | 0.1841 | 0.1099 | 0.3104 | 0.195 | 0.0822 | 0.0902 | 0.073 | 0.0066 |
| Orthofinder run ID | 4 |
| Orthogroup | 6068 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|81 MPRPLPLPQSFIEPTAESSQFKFFDPEDTRYYWGPILGHSFPLETITFHNDPFFAECRAYGRIKEAQAKGMLKRE VAVRCEGFLLLQDEDRKILEGKGVDFEGQDVAESGDCDSGGGDVDDQKQEEQKDFVGRPQKPGKRQGRQPVRAIV KELASPESGVEAWSLRRILRDIRLLNQLKIYNRDIRKDNFRDEKLVDFGSSWTEPHCILEADKDEAAETTVEDLV KFDEMVDMEALKSDVRAMSNWGYCSKLRPRKPKASSGSA* |
| Coding | >Hirsu2|81 ATGCCACGGCCTCTCCCTCTCCCTCAATCCTTCATAGAGCCGACGGCCGAGTCGTCGCAGTTCAAGTTTTTCGAC CCAGAAGACACGCGGTACTATTGGGGACCTATTCTGGGACACTCGTTCCCGCTGGAGACGATCACTTTCCACAAC GATCCGTTCTTTGCCGAGTGCCGCGCATACGGGCGGATAAAGGAGGCACAGGCAAAGGGGATGCTCAAGCGGGAG GTTGCGGTGCGCTGTGAGGGCTTCTTGCTATTGCAGGACGAAGACAGGAAGATTCTTGAGGGAAAAGGCGTCGAT TTCGAGGGACAGGATGTGGCTGAGAGCGGAGATTGCGACAGCGGGGGTGGAGACGTCGACGATCAAAAGCAGGAG GAGCAGAAAGACTTTGTTGGCCGTCCGCAGAAGCCGGGGAAGCGTCAGGGAAGACAGCCGGTGCGAGCCATCGTC AAGGAGCTCGCCAGCCCCGAGTCCGGGGTGGAGGCTTGGAGCTTGCGGCGGATCTTGCGAGACATCAGGCTGCTC AACCAACTTAAGATTTACAACCGGGACATCCGCAAGGACAACTTCAGGGACGAAAAGCTGGTAGACTTTGGCTCG TCATGGACGGAGCCGCACTGCATCCTCGAGGCCGACAAGGACGAGGCGGCGGAGACGACGGTCGAGGACCTGGTC AAGTTCGACGAGATGGTGGATATGGAGGCGCTCAAGTCGGATGTCAGGGCGATGTCCAACTGGGGATACTGCAGC AAGCTGCGGCCCCGGAAGCCCAAGGCCAGCAGCGGGAGTGCGTAA |
| Transcript | >Hirsu2|81 ATGCCACGGCCTCTCCCTCTCCCTCAATCCTTCATAGAGCCGACGGCCGAGTCGTCGCAGTTCAAGTTTTTCGAC CCAGAAGACACGCGGTACTATTGGGGACCTATTCTGGGACACTCGTTCCCGCTGGAGACGATCACTTTCCACAAC GATCCGTTCTTTGCCGAGTGCCGCGCATACGGGCGGATAAAGGAGGCACAGGCAAAGGGGATGCTCAAGCGGGAG GTTGCGGTGCGCTGTGAGGGCTTCTTGCTATTGCAGGACGAAGACAGGAAGATTCTTGAGGGAAAAGGCGTCGAT TTCGAGGGACAGGATGTGGCTGAGAGCGGAGATTGCGACAGCGGGGGTGGAGACGTCGACGATCAAAAGCAGGAG GAGCAGAAAGACTTTGTTGGCCGTCCGCAGAAGCCGGGGAAGCGTCAGGGAAGACAGCCGGTGCGAGCCATCGTC AAGGAGCTCGCCAGCCCCGAGTCCGGGGTGGAGGCTTGGAGCTTGCGGCGGATCTTGCGAGACATCAGGCTGCTC AACCAACTTAAGATTTACAACCGGGACATCCGCAAGGACAACTTCAGGGACGAAAAGCTGGTAGACTTTGGCTCG TCATGGACGGAGCCGCACTGCATCCTCGAGGCCGACAAGGACGAGGCGGCGGAGACGACGGTCGAGGACCTGGTC AAGTTCGACGAGATGGTGGATATGGAGGCGCTCAAGTCGGATGTCAGGGCGATGTCCAACTGGGGATACTGCAGC AAGCTGCGGCCCCGGAAGCCCAAGGCCAGCAGCGGGAGTGCGTAA |
| Gene | >Hirsu2|81 ATGCCACGGCCTCTCCCTCTCCCTCAATCCTTCATAGAGCCGACGGCCGAGTCGTCGCAGTTCAAGTTTTTCGAC CCAGAAGACACGCGGTACTATTGGGGACCTATTCTGGGACACTCGTTCCCGCTGGAGACGATCACTTTCCACAAC GATCCGTTCTTTGCCGAGTGCCGCGCATACGGGCGGATAAAGGAGGCACAGGCAAAGGGGATGCTCAAGCGGGAG GTTGCGGTGCGCTGTGAGGGCTTCTTGCTATTGCAGGACGAAGACAGGAAGATTCTTGAGGGAAAAGGCGTCGAT TTCGAGGGACAGGATGTGGCTGAGAGCGGAGATTGCGACAGCGGGGGTGGAGACGTCGACGATCAAAAGCAGGAG GAGCAGAAAGACTTTGTTGGCCGTCCGCAGAAGCCGGGGAAGCGTCAGGGAAGACAGCCGGTGCGAGCCATCGTC AAGGAGCTCGCCAGCCCCGAGTCCGGGGTGGAGGCTTGGAGCTTGCGGCGGATCTTGCGAGACATCAGGCTGCTC AACCAACTTAAGATTTACAACCGGGACATCCGCAAGGACAACTTCAGGGACGAAAAGCTGGTAGACTTTGGCTCG TCATGGACGGAGCCGCACTGCATCCTCGAGGCCGACAAGGACGAGGCGGCGGAGACGACGGTCGAGGACCTGGTC AAGTTCGACGAGATGGTGGATATGGAGGCGCTCAAGTCGGATGTCAGGGCGATGTCCAACTGGGGATACTGCAGC AAGCTGCGGCCCCGGAAGCCCAAGGCCAGCAGCGGGAGTGCGTAA |