© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|8052 |
| Gene name | |
| Location | Contig_501:1381..2521 |
| Strand | - |
| Gene length (bp) | 1140 |
| Transcript length (bp) | 1047 |
| Coding sequence length (bp) | 1047 |
| Protein length (aa) | 349 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00642 | zf-CCCH | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 1.1E-08 | 180 | 203 |
| PF13920 | zf-C3HC4_3 | Zinc finger, C3HC4 type (RING finger) | 8.4E-08 | 258 | 298 |
| PF13923 | zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger) | 1.4E-07 | 259 | 296 |
| PF13445 | zf-RING_UBOX | RING-type zinc-finger | 3.1E-07 | 259 | 293 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 1.5E-06 | 259 | 296 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q4WUA0|CWC24_ASPFU | Pre-mRNA-splicing factor cwc24 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cwc24 PE=3 SV=1 | 12 | 344 | 9.0E-129 |
| sp|Q7SDY3|CWC24_NEUCR | Pre-mRNA-splicing factor cwc-24 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cwc-24 PE=3 SV=1 | 17 | 318 | 2.0E-127 |
| sp|Q5AVC5|CWC24_EMENI | Pre-mRNA-splicing factor cwc24 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cwc24 PE=3 SV=1 | 11 | 315 | 1.0E-104 |
| sp|Q4P400|CWC24_USTMA | Pre-mRNA-splicing factor CWC24 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CWC24 PE=3 SV=1 | 100 | 330 | 4.0E-57 |
| sp|O15541|R113A_HUMAN | RING finger protein 113A OS=Homo sapiens GN=RNF113A PE=1 SV=1 | 15 | 318 | 2.0E-53 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q4WUA0|CWC24_ASPFU | Pre-mRNA-splicing factor cwc24 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cwc24 PE=3 SV=1 | 12 | 344 | 9.0E-129 |
| sp|Q7SDY3|CWC24_NEUCR | Pre-mRNA-splicing factor cwc-24 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cwc-24 PE=3 SV=1 | 17 | 318 | 2.0E-127 |
| sp|Q5AVC5|CWC24_EMENI | Pre-mRNA-splicing factor cwc24 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cwc24 PE=3 SV=1 | 11 | 315 | 1.0E-104 |
| sp|Q4P400|CWC24_USTMA | Pre-mRNA-splicing factor CWC24 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CWC24 PE=3 SV=1 | 100 | 330 | 4.0E-57 |
| sp|O15541|R113A_HUMAN | RING finger protein 113A OS=Homo sapiens GN=RNF113A PE=1 SV=1 | 15 | 318 | 2.0E-53 |
| sp|Q8IZP6|R113B_HUMAN | RING finger protein 113B OS=Homo sapiens GN=RNF113B PE=1 SV=3 | 4 | 325 | 4.0E-53 |
| sp|Q9P6R8|CWC24_SCHPO | Pre-mRNA-splicing factor cwf24 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf24 PE=1 SV=1 | 110 | 347 | 9.0E-51 |
| sp|Q67ER4|R113A_BOVIN | RING finger protein 113A OS=Bos taurus GN=RNF113A PE=2 SV=1 | 109 | 318 | 3.0E-48 |
| sp|P0CQ64|CWC24_CRYNJ | Pre-mRNA-splicing factor CWC24 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CWC24 PE=3 SV=1 | 16 | 310 | 2.0E-47 |
| sp|P0CQ65|CWC24_CRYNB | Pre-mRNA-splicing factor CWC24 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CWC24 PE=3 SV=1 | 16 | 310 | 2.0E-47 |
| sp|Q8GX84|C3H1_ARATH | Zinc finger CCCH domain-containing protein 1 OS=Arabidopsis thaliana GN=At1g01350 PE=2 SV=2 | 5 | 321 | 3.0E-46 |
| sp|P53769|CWC24_YEAST | Pre-mRNA-splicing factor CWC24 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CWC24 PE=1 SV=1 | 157 | 318 | 1.0E-44 |
| sp|Q9FNG6|C3H51_ARATH | Zinc finger CCCH domain-containing protein 51 OS=Arabidopsis thaliana GN=At5g06420 PE=2 SV=1 | 13 | 321 | 7.0E-44 |
| sp|Q752S4|CWC24_ASHGO | Pre-mRNA-splicing factor CWC24 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CWC24 PE=3 SV=1 | 154 | 314 | 1.0E-42 |
| sp|Q55G16|RN113_DICDI | RING finger protein 113 homolog OS=Dictyostelium discoideum GN=rnf113 PE=3 SV=1 | 131 | 319 | 3.0E-40 |
| sp|Q6FXX1|CWC24_CANGA | Pre-mRNA-splicing factor CWC24 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CWC24 PE=3 SV=1 | 163 | 310 | 3.0E-39 |
| sp|O17917|RN113_CAEEL | RING finger protein 113 homolog OS=Caenorhabditis elegans GN=rnf-113 PE=2 SV=2 | 160 | 316 | 2.0E-38 |
| sp|Q6BYU0|CWC24_DEBHA | Pre-mRNA-splicing factor CWC24 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=CWC24 PE=3 SV=2 | 113 | 314 | 2.0E-37 |
| sp|Q6CB23|CWC24_YARLI | Pre-mRNA-splicing factor CWC24 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CWC24 PE=3 SV=1 | 96 | 309 | 2.0E-37 |
| sp|Q6K4V3|C3H15_ORYSJ | Zinc finger CCCH domain-containing protein 15 OS=Oryza sativa subsp. japonica GN=Os02g0301000 PE=2 SV=1 | 161 | 314 | 6.0E-37 |
| sp|Q6CSS6|CWC24_KLULA | Pre-mRNA-splicing factor CWC24 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=CWC24 PE=3 SV=1 | 168 | 316 | 6.0E-35 |
| sp|Q5ACW2|CWC24_CANAL | Pre-mRNA-splicing factor CWC24 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CWC24 PE=3 SV=1 | 168 | 304 | 7.0E-30 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0043169 | cation binding | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|8052 MAGSPDACAPQAQSVPVAVFKKRGAKGKANLRKRPATPPPAASSDSDYSSSENEAGQRVKRRKHAAGVVTATSKH ASNDRAGLGATVFTANRDAPITVTDDATRQSNWYDEDSKDALSAKKLLGSTRSIPTDVQSDGTYKGLANRASFIQ KNPDAPQRTVGPIKAPTNIRTITVTDFAPDVCKDYKQTGFCGFGDNCKFLHSREDYKQGWQLDKEWENVTKGKKG IGGTVVASANRNKPNEDDDDDDDEVLLESIPFVCIICRESYKEPIVTRCGHYFCESCALKRYRRDPSCAACGSGT SGVFNSAKRLQKLLDRKRERAARRRQEALEAGEEVSEDEEGEADGEGG* |
| Coding | >Hirsu2|8052 ATGGCCGGCTCGCCAGATGCCTGTGCGCCGCAAGCCCAGAGCGTTCCCGTCGCCGTCTTCAAGAAGAGGGGCGCC AAGGGCAAGGCCAACCTGCGAAAGAGGCCCGCGACGCCTCCGCCCGCGGCTAGCAGCGACAGCGACTACTCGTCG TCGGAAAACGAGGCCGGTCAGCGCGTGAAGCGACGCAAGCACGCGGCCGGCGTTGTCACGGCCACGTCCAAGCAC GCGTCCAACGACCGGGCTGGCCTGGGCGCCACCGTCTTCACGGCCAACCGAGACGCCCCCATCACCGTCACCGAC GATGCCACGAGGCAGAGCAACTGGTATGACGAAGACTCAAAAGACGCCTTGTCGGCCAAGAAGCTGCTCGGCTCG ACTCGCTCCATCCCGACAGACGTACAGTCGGACGGCACGTACAAGGGCCTGGCGAACCGAGCGTCCTTTATCCAG AAGAACCCAGACGCCCCGCAACGCACCGTAGGGCCCATCAAGGCCCCGACCAACATCCGCACAATCACCGTCACC GACTTTGCGCCCGACGTCTGCAAGGACTACAAGCAGACGGGCTTCTGCGGCTTCGGCGACAACTGCAAGTTTCTA CACAGCCGCGAGGACTACAAGCAAGGCTGGCAGCTGGATAAGGAGTGGGAGAACGTGACCAAGGGCAAAAAGGGC ATCGGAGGCACCGTCGTGGCCAGCGCGAACCGAAACAAGCCAAACGAAGATGACGACGACGACGACGACGAGGTG CTTCTGGAGAGCATACCCTTCGTGTGCATCATCTGCCGCGAGTCGTACAAGGAACCGATCGTGACGCGGTGCGGG CACTACTTCTGCGAGTCGTGCGCCCTCAAGCGGTACCGGAGAGACCCGAGCTGCGCGGCGTGTGGGTCGGGGACG AGCGGCGTCTTCAACTCCGCCAAGCGGCTGCAGAAGCTCCTGGACCGGAAGCGCGAACGGGCGGCCAGGAGGAGA CAGGAGGCGCTCGAGGCGGGCGAGGAGGTCAGCGAAGACGAGGAAGGGGAAGCTGACGGAGAGGGGGGGTGA |
| Transcript | >Hirsu2|8052 ATGGCCGGCTCGCCAGATGCCTGTGCGCCGCAAGCCCAGAGCGTTCCCGTCGCCGTCTTCAAGAAGAGGGGCGCC AAGGGCAAGGCCAACCTGCGAAAGAGGCCCGCGACGCCTCCGCCCGCGGCTAGCAGCGACAGCGACTACTCGTCG TCGGAAAACGAGGCCGGTCAGCGCGTGAAGCGACGCAAGCACGCGGCCGGCGTTGTCACGGCCACGTCCAAGCAC GCGTCCAACGACCGGGCTGGCCTGGGCGCCACCGTCTTCACGGCCAACCGAGACGCCCCCATCACCGTCACCGAC GATGCCACGAGGCAGAGCAACTGGTATGACGAAGACTCAAAAGACGCCTTGTCGGCCAAGAAGCTGCTCGGCTCG ACTCGCTCCATCCCGACAGACGTACAGTCGGACGGCACGTACAAGGGCCTGGCGAACCGAGCGTCCTTTATCCAG AAGAACCCAGACGCCCCGCAACGCACCGTAGGGCCCATCAAGGCCCCGACCAACATCCGCACAATCACCGTCACC GACTTTGCGCCCGACGTCTGCAAGGACTACAAGCAGACGGGCTTCTGCGGCTTCGGCGACAACTGCAAGTTTCTA CACAGCCGCGAGGACTACAAGCAAGGCTGGCAGCTGGATAAGGAGTGGGAGAACGTGACCAAGGGCAAAAAGGGC ATCGGAGGCACCGTCGTGGCCAGCGCGAACCGAAACAAGCCAAACGAAGATGACGACGACGACGACGACGAGGTG CTTCTGGAGAGCATACCCTTCGTGTGCATCATCTGCCGCGAGTCGTACAAGGAACCGATCGTGACGCGGTGCGGG CACTACTTCTGCGAGTCGTGCGCCCTCAAGCGGTACCGGAGAGACCCGAGCTGCGCGGCGTGTGGGTCGGGGACG AGCGGCGTCTTCAACTCCGCCAAGCGGCTGCAGAAGCTCCTGGACCGGAAGCGCGAACGGGCGGCCAGGAGGAGA CAGGAGGCGCTCGAGGCGGGCGAGGAGGTCAGCGAAGACGAGGAAGGGGAAGCTGACGGAGAGGGGGGGTGA |
| Gene | >Hirsu2|8052 ATGGCCGGCTCGCCAGATGCCTGTGCGCCGCAAGCCCAGAGCGTTCCCGTCGCCGTCTTCAAGAAGAGGGGCGCC AAGGGCAAGGCCAACCTGCGAAAGAGGCCCGCGACGCCTCCGCCCGCGGCTAGCAGCGACAGCGACTACTCGTCG TCGGAAAACGAGGCCGGTCAGCGCGTGAAGCGACGCAAGCACGCGGCCGGCGTTGTCACGGCCACGTCCAAGCAC GCGTCCAACGACCGGGCTGGCCTGGGCGCCACCGTCTTCACGGCCAACCGAGACGCCCCCATCACCGTCACCGAC GATGCCACGAGGCAGAGCAACTGGTATGACGAAGACTCAAAAGACGCCTTGTCGGCCAAGAAGCTGCTCGGCTCG ACTCGCTCCATCCCGACAGACGTACAGTCGGACGGCACGTACAAGGGCCTGGCGAACCGAGCGTCCTTTATCCAG AAGAACCCAGACGCCCCGCAACGCACCGTAGGGCCCATCAAGGCCCCGACCAACATCCGCACAATCACCGTCACC GACTTTGCGCCCGACGTCTGCAAGGACTACAAGCAGACGGGCTTCTGCGGCTTCGGCGACAACTGGTGAGTCGTC CACCGTACCCCGGTGCGGCATTGTCCCCCCTACCCCGCTACGTCTTGCCGGACCGCTGCTGACCCGAGTCCACTC GTCGACAGCAAGTTTCTACACAGCCGCGAGGACTACAAGCAAGGCTGGCAGCTGGATAAGGAGTGGGAGAACGTG ACCAAGGGCAAAAAGGGCATCGGAGGCACCGTCGTGGCCAGCGCGAACCGAAACAAGCCAAACGAAGATGACGAC GACGACGACGACGAGGTGCTTCTGGAGAGCATACCCTTCGTGTGCATCATCTGCCGCGAGTCGTACAAGGAACCG ATCGTGACGCGGTGCGGGCACTACTTCTGCGAGTCGTGCGCCCTCAAGCGGTACCGGAGAGACCCGAGCTGCGCG GCGTGTGGGTCGGGGACGAGCGGCGTCTTCAACTCCGCCAAGCGGCTGCAGAAGCTCCTGGACCGGAAGCGCGAA CGGGCGGCCAGGAGGAGACAGGAGGCGCTCGAGGCGGGCGAGGAGGTCAGCGAAGACGAGGAAGGGGAAGCTGAC GGAGAGGGGGGGTGA |