© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|8043 |
| Gene name | |
| Location | Contig_500:2749..3127 |
| Strand | + |
| Gene length (bp) | 378 |
| Transcript length (bp) | 378 |
| Coding sequence length (bp) | 378 |
| Protein length (aa) | 126 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07727 | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | 4.8E-12 | 21 | 119 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P10978|POLX_TOBAC | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1 | 8 | 114 | 1.0E-13 |
| sp|P04146|COPIA_DROME | Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3 | 3 | 114 | 6.0E-09 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 33 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|8043 MGSEFKIAIKKELYDLIRRGTWRLTEREKARGYPLPLKWVFTYKFDQDGYLQRYKARICVRGDLQDDDDGLETYA ATLAAKTFRIAMATAARFDLDIRQFDIGNAFLYSDLNKDHPVYVGSRRTT* |
| Coding | >Hirsu2|8043 ATGGGCTCAGAGTTCAAGATTGCCATCAAAAAGGAACTATACGACCTAATAAGACGAGGCACGTGGAGACTGACT GAACGAGAAAAGGCTCGTGGATATCCGCTTCCACTGAAGTGGGTGTTCACGTATAAGTTCGATCAAGATGGGTAC CTCCAGAGATATAAGGCACGCATCTGTGTCCGCGGAGATCTTCAAGATGACGATGACGGGTTAGAAACCTATGCA GCCACTCTCGCGGCAAAGACCTTCCGGATCGCCATGGCAACTGCAGCACGATTCGACCTCGACATTAGACAATTT GACATTGGCAATGCCTTCCTGTACAGCGACCTCAACAAGGACCACCCCGTCTACGTCGGCTCCCGCAGGACTACG TAG |
| Transcript | >Hirsu2|8043 ATGGGCTCAGAGTTCAAGATTGCCATCAAAAAGGAACTATACGACCTAATAAGACGAGGCACGTGGAGACTGACT GAACGAGAAAAGGCTCGTGGATATCCGCTTCCACTGAAGTGGGTGTTCACGTATAAGTTCGATCAAGATGGGTAC CTCCAGAGATATAAGGCACGCATCTGTGTCCGCGGAGATCTTCAAGATGACGATGACGGGTTAGAAACCTATGCA GCCACTCTCGCGGCAAAGACCTTCCGGATCGCCATGGCAACTGCAGCACGATTCGACCTCGACATTAGACAATTT GACATTGGCAATGCCTTCCTGTACAGCGACCTCAACAAGGACCACCCCGTCTACGTCGGCTCCCGCAGGACTACG TAG |
| Gene | >Hirsu2|8043 ATGGGCTCAGAGTTCAAGATTGCCATCAAAAAGGAACTATACGACCTAATAAGACGAGGCACGTGGAGACTGACT GAACGAGAAAAGGCTCGTGGATATCCGCTTCCACTGAAGTGGGTGTTCACGTATAAGTTCGATCAAGATGGGTAC CTCCAGAGATATAAGGCACGCATCTGTGTCCGCGGAGATCTTCAAGATGACGATGACGGGTTAGAAACCTATGCA GCCACTCTCGCGGCAAAGACCTTCCGGATCGCCATGGCAACTGCAGCACGATTCGACCTCGACATTAGACAATTT GACATTGGCAATGCCTTCCTGTACAGCGACCTCAACAAGGACCACCCCGTCTACGTCGGCTCCCGCAGGACTACG TAG |