© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|8041 |
| Gene name | |
| Location | Contig_50:49911..50392 |
| Strand | + |
| Gene length (bp) | 481 |
| Transcript length (bp) | 411 |
| Coding sequence length (bp) | 411 |
| Protein length (aa) | 137 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.0925 | 0.1003 | 0.9256 | 0.0603 | 0.133 | 0.0164 | 0.0808 | 0.0873 | 0.06 | 0.0103 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 17 | 0.910587 |
| CAZyme category | E-value | Start | End |
|---|---|---|---|
| AA11 | 7.2E-36 | 18 | 114 |
| Orthofinder run ID | 4 |
| Orthogroup | 4007 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|8041 MLMNAMTVAGLASIASAHIMMSNPVPFGKSTLNNSPLEADGSDFPCKQRGNVYEAEGAKNVYKQGSVQALEFVGS AVHGGGSCQVVVTTDLKPTKESKWKVIKSIEGGCPAQGQAGNMGGGPAAPIPYQSATARCT* |
| Coding | >Hirsu2|8041 ATGCTCATGAACGCTATGACAGTCGCCGGCCTGGCTAGCATCGCCAGCGCCCACATCATGATGAGCAACCCCGTT CCGTTCGGCAAGTCTACGCTCAACAACAGCCCCCTGGAGGCGGACGGGTCCGACTTCCCCTGCAAGCAGCGAGGC AACGTGTACGAGGCCGAGGGTGCCAAGAACGTGTACAAGCAGGGGAGCGTGCAGGCGCTCGAGTTCGTCGGCTCG GCCGTGCACGGCGGAGGCTCGTGCCAGGTGGTGGTGACGACGGACCTCAAGCCGACCAAGGAGTCCAAGTGGAAG GTGATCAAGTCGATCGAGGGCGGCTGCCCCGCGCAGGGCCAGGCCGGCAACATGGGCGGCGGCCCGGCGGCGCCG ATCCCGTACCAATCGGCAACCGCGAGATGTACATGA |
| Transcript | >Hirsu2|8041 ATGCTCATGAACGCTATGACAGTCGCCGGCCTGGCTAGCATCGCCAGCGCCCACATCATGATGAGCAACCCCGTT CCGTTCGGCAAGTCTACGCTCAACAACAGCCCCCTGGAGGCGGACGGGTCCGACTTCCCCTGCAAGCAGCGAGGC AACGTGTACGAGGCCGAGGGTGCCAAGAACGTGTACAAGCAGGGGAGCGTGCAGGCGCTCGAGTTCGTCGGCTCG GCCGTGCACGGCGGAGGCTCGTGCCAGGTGGTGGTGACGACGGACCTCAAGCCGACCAAGGAGTCCAAGTGGAAG GTGATCAAGTCGATCGAGGGCGGCTGCCCCGCGCAGGGCCAGGCCGGCAACATGGGCGGCGGCCCGGCGGCGCCG ATCCCGTACCAATCGGCAACCGCGAGATGTACATGA |
| Gene | >Hirsu2|8041 ATGCTCATGAACGCTATGACAGTCGCCGGCCTGGCTAGCATCGCCAGCGCCCACATCATGATGAGCAACCCCGTT CCGTTCGGCAAGTCTACGCTCAACAACAGCCCCCTGGAGGCGGACGGGTCCGACTTCCCCTGCAAGCAGCGAGGC AACGTGTACGAGGCCGAGGGTGCCAAGAACGTGTACAAGCAGGGGAGCGTGCAGGCGCTCGAGTTCGTCGGCTCG GCCGTGCACGGCGGAGGCTCGTGCCAGGTGGTGGTGACGACGGACCTCAAGCCGACCAAGGAGTCCAAGTGGAAG GTGATCAAGTCGATCGAGGGCGGCTGCCCCGCGCAGGGCCAGGCCGGCAACATGGGCGGCGGCCCGGCGGCGCCG ATCCCGTACCAGTACAACTTCACGGTGCCGCAGGAACTGGCCAAGGGCGACTACGTCGTCGCCTGGGCCTGGTGG AACAAGATCGGCAACCGCGAGATGTACATGA |