Fungal Genomics

at Utrecht University

General Properties

Protein ID	Hirsu2\|8025
Gene name
Location	Contig_5:94773..95673
Strand	+
Gene length (bp)	900
Transcript length (bp)	900
Coding sequence length (bp)	900
Protein length (aa)	300

PFAM Domains

(None)

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P38735\|VMR1_YEAST	ABC transporter ATP-binding protein/permease VMR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VMR1 PE=2 SV=1	100	290	1.0E-19
sp\|P32386\|YBT1_YEAST	ATP-dependent bile acid permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YBT1 PE=1 SV=2	128	295	4.0E-16
sp\|A7A063\|NFT1_YEAS7	ABC transporter NFT1 OS=Saccharomyces cerevisiae (strain YJM789) GN=NFT1 PE=3 SV=1	145	290	3.0E-10
sp\|P0CE70\|NFT1_YEASX	ABC transporter NFT1 OS=Saccharomyces cerevisiae GN=NFT1 PE=3 SV=1	145	290	3.0E-10
sp\|C8ZCR2\|NFT1_YEAS8	ABC transporter NFT1 OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=NFT1 PE=3 SV=1	145	290	4.0E-10

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P38735\|VMR1_YEAST	ABC transporter ATP-binding protein/permease VMR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VMR1 PE=2 SV=1	100	290	1.0E-19
sp\|P32386\|YBT1_YEAST	ATP-dependent bile acid permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YBT1 PE=1 SV=2	128	295	4.0E-16
sp\|A7A063\|NFT1_YEAS7	ABC transporter NFT1 OS=Saccharomyces cerevisiae (strain YJM789) GN=NFT1 PE=3 SV=1	145	290	3.0E-10
sp\|P0CE70\|NFT1_YEASX	ABC transporter NFT1 OS=Saccharomyces cerevisiae GN=NFT1 PE=3 SV=1	145	290	3.0E-10
sp\|C8ZCR2\|NFT1_YEAS8	ABC transporter NFT1 OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=NFT1 PE=3 SV=1	145	290	4.0E-10
sp\|P0CE68\|NFT1_YEAST	ABC transporter NFT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NFT1 PE=3 SV=1	145	290	5.0E-10
sp\|Q8VZZ4\|AB6C_ARATH	ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6 PE=2 SV=3	125	299	2.0E-08
sp\|Q9LK62\|AB7C_ARATH	ABC transporter C family member 7 OS=Arabidopsis thaliana GN=ABCC7 PE=1 SV=1	125	299	2.0E-06

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 24	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	4	21	17
2	28	50	22
3	60	77	17
4	204	226	22
5	241	263	22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2\|8025 MALALDIGLCSIFLLLSLRSSHQQDPALSLLAAMLSSTYALCLVLAHAYVGHDCLSLSPSLRHHIILVYAAQWLF TLTRARFVFAVASEIPHLEATLLRFAIFTALLLHHALASKRLADPPPGNDAADPPCTPTPEETASLASRLTQSWI TNLIWKGRHEALESQHLWELARGEKSATVVSSYSWTTPSTLSLRKRLFCFLKRDILLQGIWAALASVAVFVPAQF LRALIRCLESPDAMHTSAAWLMVVGLLVSALVAGVANTQCEWKGQKINARLRAVLVGEIYAKILRWKGATGGSV*
Coding	>Hirsu2\|8025 ATGGCTTTGGCGCTCGACATTGGCCTCTGCTCCATCTTCCTCCTCCTCTCCCTGCGCTCCAGCCACCAGCAGGAC CCGGCCCTGTCGTTACTCGCCGCCATGCTGTCGTCCACCTACGCACTCTGCCTGGTCCTTGCCCACGCTTATGTT GGCCACGACTGCCTCAGCCTTTCTCCGTCTCTGAGGCACCACATCATACTCGTCTACGCCGCGCAATGGCTGTTC ACGCTCACGCGGGCCCGATTCGTCTTCGCCGTGGCGTCCGAGATCCCTCACTTAGAGGCAACGCTGCTTCGTTTC GCCATCTTCACCGCACTCCTCCTGCATCACGCCCTCGCCTCGAAACGGCTGGCAGATCCGCCGCCAGGAAACGAT GCCGCCGATCCGCCTTGCACACCTACGCCGGAAGAGACCGCCAGCCTCGCCTCTCGATTGACTCAGTCTTGGATA ACCAATCTCATTTGGAAAGGGCGTCATGAGGCCCTCGAGTCGCAGCATCTCTGGGAGTTGGCAAGAGGCGAGAAG TCGGCCACGGTTGTCTCGTCGTACAGTTGGACAACGCCCTCCACCTTATCTCTGCGCAAAAGACTGTTCTGCTTC CTGAAGCGAGACATTCTGCTGCAGGGAATCTGGGCAGCCCTCGCGAGCGTGGCTGTCTTTGTCCCGGCGCAGTTT CTCCGCGCCCTCATCCGATGCCTGGAGTCCCCCGATGCAATGCACACGAGCGCGGCTTGGCTGATGGTGGTCGGA CTGCTCGTCTCGGCTCTTGTAGCAGGTGTCGCAAACACCCAGTGCGAGTGGAAGGGCCAGAAGATCAACGCAAGG CTCAGGGCCGTCCTGGTCGGCGAAATCTACGCCAAGATTCTGCGGTGGAAAGGAGCGACGGGTGGCTCTGTATAG
Transcript	>Hirsu2\|8025 ATGGCTTTGGCGCTCGACATTGGCCTCTGCTCCATCTTCCTCCTCCTCTCCCTGCGCTCCAGCCACCAGCAGGAC CCGGCCCTGTCGTTACTCGCCGCCATGCTGTCGTCCACCTACGCACTCTGCCTGGTCCTTGCCCACGCTTATGTT GGCCACGACTGCCTCAGCCTTTCTCCGTCTCTGAGGCACCACATCATACTCGTCTACGCCGCGCAATGGCTGTTC ACGCTCACGCGGGCCCGATTCGTCTTCGCCGTGGCGTCCGAGATCCCTCACTTAGAGGCAACGCTGCTTCGTTTC GCCATCTTCACCGCACTCCTCCTGCATCACGCCCTCGCCTCGAAACGGCTGGCAGATCCGCCGCCAGGAAACGAT GCCGCCGATCCGCCTTGCACACCTACGCCGGAAGAGACCGCCAGCCTCGCCTCTCGATTGACTCAGTCTTGGATA ACCAATCTCATTTGGAAAGGGCGTCATGAGGCCCTCGAGTCGCAGCATCTCTGGGAGTTGGCAAGAGGCGAGAAG TCGGCCACGGTTGTCTCGTCGTACAGTTGGACAACGCCCTCCACCTTATCTCTGCGCAAAAGACTGTTCTGCTTC CTGAAGCGAGACATTCTGCTGCAGGGAATCTGGGCAGCCCTCGCGAGCGTGGCTGTCTTTGTCCCGGCGCAGTTT CTCCGCGCCCTCATCCGATGCCTGGAGTCCCCCGATGCAATGCACACGAGCGCGGCTTGGCTGATGGTGGTCGGA CTGCTCGTCTCGGCTCTTGTAGCAGGTGTCGCAAACACCCAGTGCGAGTGGAAGGGCCAGAAGATCAACGCAAGG CTCAGGGCCGTCCTGGTCGGCGAAATCTACGCCAAGATTCTGCGGTGGAAAGGAGCGACGGGTGGCTCTGTATAG
Gene	>Hirsu2\|8025 ATGGCTTTGGCGCTCGACATTGGCCTCTGCTCCATCTTCCTCCTCCTCTCCCTGCGCTCCAGCCACCAGCAGGAC CCGGCCCTGTCGTTACTCGCCGCCATGCTGTCGTCCACCTACGCACTCTGCCTGGTCCTTGCCCACGCTTATGTT GGCCACGACTGCCTCAGCCTTTCTCCGTCTCTGAGGCACCACATCATACTCGTCTACGCCGCGCAATGGCTGTTC ACGCTCACGCGGGCCCGATTCGTCTTCGCCGTGGCGTCCGAGATCCCTCACTTAGAGGCAACGCTGCTTCGTTTC GCCATCTTCACCGCACTCCTCCTGCATCACGCCCTCGCCTCGAAACGGCTGGCAGATCCGCCGCCAGGAAACGAT GCCGCCGATCCGCCTTGCACACCTACGCCGGAAGAGACCGCCAGCCTCGCCTCTCGATTGACTCAGTCTTGGATA ACCAATCTCATTTGGAAAGGGCGTCATGAGGCCCTCGAGTCGCAGCATCTCTGGGAGTTGGCAAGAGGCGAGAAG TCGGCCACGGTTGTCTCGTCGTACAGTTGGACAACGCCCTCCACCTTATCTCTGCGCAAAAGACTGTTCTGCTTC CTGAAGCGAGACATTCTGCTGCAGGGAATCTGGGCAGCCCTCGCGAGCGTGGCTGTCTTTGTCCCGGCGCAGTTT CTCCGCGCCCTCATCCGATGCCTGGAGTCCCCCGATGCAATGCACACGAGCGCGGCTTGGCTGATGGTGGTCGGA CTGCTCGTCTCGGCTCTTGTAGCAGGTGTCGCAAACACCCAGTGCGAGTGGAAGGGCCAGAAGATCAACGCAAGG CTCAGGGCCGTCCTGGTCGGCGAAATCTACGCCAAGATTCTGCGGTGGAAAGGAGCGACGGGTGGCTCTGTATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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