Protein ID | Hirsu2|8019 |
Gene name | |
Location | Contig_5:69584..70794 |
Strand | - |
Gene length (bp) | 1210 |
Transcript length (bp) | 1098 |
Coding sequence length (bp) | 1098 |
Protein length (aa) | 366 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF13343 | SBP_bac_6 | Bacterial extracellular solute-binding protein | 1.7E-07 | 116 | 299 |
PF13531 | SBP_bac_11 | Bacterial extracellular solute-binding protein | 1.3E-05 | 54 | 298 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.1553 | 0.0525 | 0.8775 | 0.0789 | 0.1969 | 0.0563 | 0.4709 | 0.3952 | 0.1788 | 0.0218 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 18 | 0.824268 |
Orthofinder run ID | 4 |
Orthogroup | 5163 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|8019 MTRLLHVAAALLVGGVVASDRILGFEASPVAETRSLDEIYEAAKKEGGAVTLWHGGDEEHMVDFIKQEFETRFPD LKLNLTVDLSKYHSSRIDEQLAKSSVYVDSVILQTLHDYPRWAQQGALLNYAPQGFDQIHSGFKDTTSASYYGLE IFYWTNVWNPQRLPNADFDTFDEYLKPEYKDKLVFTYPNDDDAILFAFNLVMQRKGTAWFDALLAQNPRWVRGTN TPLTLVQRDNETVSATFGVYTPLSGAKGVNNSFPTDADFVSWPQMGAILKDAPHPESAKLLHNFMLSPDFQKKLG WSVRMDMDAPEGFRKIMDTNHTNPLAFASFMADRVTVERLRFWFESRLGTAQGESPLTDAIVPPQ* |
Coding | >Hirsu2|8019 ATGACTCGACTCCTTCACGTTGCCGCCGCCCTGCTCGTAGGGGGGGTAGTTGCGAGCGATCGCATTCTTGGATTC GAGGCCAGCCCCGTCGCCGAAACCCGCTCGCTCGACGAGATTTACGAAGCGGCGAAGAAGGAGGGCGGTGCCGTG ACCCTATGGCACGGCGGTGACGAAGAGCATATGGTGGATTTCATCAAGCAGGAATTCGAGACTCGATTTCCGGAC CTGAAGCTCAACCTCACAGTCGATCTATCGAAGTACCACTCCAGCAGAATCGATGAGCAACTAGCCAAAAGCAGC GTCTACGTCGACAGCGTCATCCTGCAAACACTCCACGACTATCCGCGGTGGGCGCAACAGGGCGCTCTCCTCAAC TACGCGCCTCAGGGCTTCGACCAGATCCACAGCGGCTTCAAGGACACGACGTCGGCTTCGTATTATGGGCTCGAG ATCTTTTACTGGACCAATGTCTGGAATCCGCAGCGGCTACCGAACGCCGACTTTGACACCTTTGACGAGTACCTC AAGCCGGAGTATAAGGACAAGTTGGTCTTTACTTACCCTAACGACGACGACGCGATTCTCTTCGCCTTCAATCTC GTAATGCAGCGCAAGGGCACGGCCTGGTTTGATGCTCTCCTGGCGCAGAACCCGCGATGGGTCCGTGGAACGAAC ACGCCCCTGACGCTGGTTCAGCGGGACAACGAGACTGTCTCGGCGACGTTTGGCGTCTACACGCCTCTGAGCGGC GCGAAAGGCGTCAACAACTCATTTCCTACCGATGCCGACTTCGTCAGCTGGCCTCAGATGGGCGCGATCCTCAAG GACGCCCCACATCCCGAGAGCGCGAAGCTGCTGCACAACTTTATGCTGAGCCCCGACTTCCAGAAGAAGCTGGGC TGGAGTGTGCGAATGGACATGGACGCGCCCGAGGGGTTCCGCAAGATCATGGATACGAATCACACGAATCCTCTT GCGTTCGCGTCGTTCATGGCCGACCGCGTCACGGTGGAGAGGCTCAGGTTCTGGTTCGAGAGCCGGCTGGGCACG GCGCAGGGGGAGTCTCCCTTGACCGACGCTATCGTGCCCCCGCAGTGA |
Transcript | >Hirsu2|8019 ATGACTCGACTCCTTCACGTTGCCGCCGCCCTGCTCGTAGGGGGGGTAGTTGCGAGCGATCGCATTCTTGGATTC GAGGCCAGCCCCGTCGCCGAAACCCGCTCGCTCGACGAGATTTACGAAGCGGCGAAGAAGGAGGGCGGTGCCGTG ACCCTATGGCACGGCGGTGACGAAGAGCATATGGTGGATTTCATCAAGCAGGAATTCGAGACTCGATTTCCGGAC CTGAAGCTCAACCTCACAGTCGATCTATCGAAGTACCACTCCAGCAGAATCGATGAGCAACTAGCCAAAAGCAGC GTCTACGTCGACAGCGTCATCCTGCAAACACTCCACGACTATCCGCGGTGGGCGCAACAGGGCGCTCTCCTCAAC TACGCGCCTCAGGGCTTCGACCAGATCCACAGCGGCTTCAAGGACACGACGTCGGCTTCGTATTATGGGCTCGAG ATCTTTTACTGGACCAATGTCTGGAATCCGCAGCGGCTACCGAACGCCGACTTTGACACCTTTGACGAGTACCTC AAGCCGGAGTATAAGGACAAGTTGGTCTTTACTTACCCTAACGACGACGACGCGATTCTCTTCGCCTTCAATCTC GTAATGCAGCGCAAGGGCACGGCCTGGTTTGATGCTCTCCTGGCGCAGAACCCGCGATGGGTCCGTGGAACGAAC ACGCCCCTGACGCTGGTTCAGCGGGACAACGAGACTGTCTCGGCGACGTTTGGCGTCTACACGCCTCTGAGCGGC GCGAAAGGCGTCAACAACTCATTTCCTACCGATGCCGACTTCGTCAGCTGGCCTCAGATGGGCGCGATCCTCAAG GACGCCCCACATCCCGAGAGCGCGAAGCTGCTGCACAACTTTATGCTGAGCCCCGACTTCCAGAAGAAGCTGGGC TGGAGTGTGCGAATGGACATGGACGCGCCCGAGGGGTTCCGCAAGATCATGGATACGAATCACACGAATCCTCTT GCGTTCGCGTCGTTCATGGCCGACCGCGTCACGGTGGAGAGGCTCAGGTTCTGGTTCGAGAGCCGGCTGGGCACG GCGCAGGGGGAGTCTCCCTTGACCGACGCTATCGTGCCCCCGCAGTGA |
Gene | >Hirsu2|8019 ATGACTCGACTCCTTCACGTTGCCGCCGCCCTGCTCGTAGGGGGGGTAGTTGCGAGCGATCGCATTCTTGGATTC GAGGCCAGCCCCGTCGCCGAAACCCGCTCGCTCGACGAGATTTACGAAGCGGCGAAGAAGGAGGGCGGTGCCGTG ACCCTATGGCACGGCGGTGACGAAGAGCATATGGTGGATTTCATCAAGCAGGAATTCGAGACTCGATTTCCGGAC CTGAAGCTCAACCTCACAGTCGATCTATCGAAGTACCACTCCAGCAGAATCGATGAGCAACTAGCCAAAAGCAGC GTCTACGTCGACAGCGTCATCCTGCAAACACTCCACGACTATCCGCGGTGGGCGCAACAGGGCGCTCTCCTCAAC TACGCGCCTCAGGGCTTCGACCAGATCCACAGCGGCTTCAAGGACACGACGTCGGCTTCGTATTATGGGCTCGAG ATCTTTTACTGGACCAATGTCTGGAATCCGCAGCGGCTACCGAACGCCGACTTTGACACCTTTGACGAGTACCTC AAGCCGGAGTATAAGGACAAGTTGGTCTTTACTTACCCTAACGACGACGACGCGATTCTCTTCGCCTTCAATCTC GTGTAGGTCATGTACCCGTACACACACACTCTTTCTCCTTTCAGTGCAATTCGTAATGCCCGGGCGGGTGCGCGG CGGCTCGACAGACGCTGACTTGGCGCGTCACCTCCACAGAATGCAGCGCAAGGGCACGGCCTGGTTTGATGCTCT CCTGGCGCAGAACCCGCGATGGGTCCGTGGAACGAACACGCCCCTGACGCTGGTTCAGCGGGACAACGAGACTGT CTCGGCGACGTTTGGCGTCTACACGCCTCTGAGCGGCGCGAAAGGCGTCAACAACTCATTTCCTACCGATGCCGA CTTCGTCAGCTGGCCTCAGATGGGCGCGATCCTCAAGGACGCCCCACATCCCGAGAGCGCGAAGCTGCTGCACAA CTTTATGCTGAGCCCCGACTTCCAGAAGAAGCTGGGCTGGAGTGTGCGAATGGACATGGACGCGCCCGAGGGGTT CCGCAAGATCATGGATACGAATCACACGAATCCTCTTGCGTTCGCGTCGTTCATGGCCGACCGCGTCACGGTGGA GAGGCTCAGGTTCTGGTTCGAGAGCCGGCTGGGCACGGCGCAGGGGGAGTCTCCCTTGACCGACGCTATCGTGCC CCCGCAGTGA |