Protein ID | Hirsu2|8003 |
Gene name | |
Location | Contig_5:22280..23468 |
Strand | - |
Gene length (bp) | 1188 |
Transcript length (bp) | 1188 |
Coding sequence length (bp) | 1188 |
Protein length (aa) | 396 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF04616 | Glyco_hydro_43 | Glycosyl hydrolases family 43 | 8.2E-34 | 48 | 331 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P82594|IABF_STRCX | Extracellular exo-alpha-(1->5)-L-arabinofuranosidase OS=Streptomyces chartreusis PE=1 SV=1 | 64 | 333 | 2.0E-22 |
GO Term | Description | Terminal node |
---|---|---|
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
GO:0005975 | carbohydrate metabolic process | Yes |
GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
GO:0071704 | organic substance metabolic process | No |
GO:0008152 | metabolic process | No |
GO:0003824 | catalytic activity | No |
GO:0044238 | primary metabolic process | No |
GO:0008150 | biological_process | No |
GO:0016787 | hydrolase activity | No |
GO:0003674 | molecular_function | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.2599 | 0.1236 | 0.7513 | 0.2212 | 0.0899 | 0.0818 | 0.4277 | 0.4336 | 0.3197 | 0.0202 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 27 | 0.99977 |
CAZyme category | E-value | Start | End |
---|---|---|---|
GH43_26 | 5.7E-79 | 49 | 338 |
Orthofinder run ID | 4 |
Orthogroup | 6268 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|8003 MEVRNPLRLLLLTILFLITIRTAQIQAGGEERRPSSSSASTGSTMSNKPICDCDTPDPWILAANGKFYFTFTLGN RVEIWASSQLENFHGCQKAVVWQPAPGSPWSEDVWAPELHQLNGKWYIYTCAAPPGVGNPGHRTLVLESDKKDPM DPAGWKFLGPLKGMPDHWSIDATAFSTDGHDLYLCWSGWPPGDHSDKQQNLFVARMASPVEVVPDTAVCVCHADQ PWERPDDGSRGVAEGPTWVNFPGFRGIVYSAYGSWTSEYKLGLLALVGKDPLRPESWSKRPAPLLVSDKDHGGPF GPGHASFLPSPYNDGRLFCVYHGTANYGEGWGNRKARVLSMGPEMFAPNAAPTCCHCANGLPGAGGGGGPSRRRQ VLDKAPPQVQGFIGKVKKYF* |
Coding | >Hirsu2|8003 ATGGAGGTTCGGAATCCCTTGCGCCTCCTCCTCCTCACCATCCTCTTCCTCATCACCATCCGGACAGCACAGATC CAGGCAGGCGGCGAGGAAAGACGGCCATCATCCAGCTCGGCATCCACAGGCAGCACCATGTCGAACAAGCCCATC TGCGATTGCGACACGCCGGACCCGTGGATCCTGGCCGCAAACGGCAAGTTCTACTTCACCTTCACGCTCGGCAAC CGTGTCGAGATATGGGCCTCGTCGCAGCTCGAGAACTTCCACGGCTGCCAGAAGGCCGTCGTCTGGCAGCCGGCG CCCGGCTCGCCCTGGTCCGAGGACGTCTGGGCGCCCGAGCTTCACCAGCTCAACGGCAAGTGGTACATCTACACC TGCGCCGCGCCGCCGGGCGTCGGGAACCCCGGCCACCGGACCCTCGTGCTCGAGTCGGACAAGAAGGACCCGATG GACCCGGCCGGGTGGAAGTTCCTGGGCCCGCTCAAGGGCATGCCCGACCACTGGTCCATCGATGCCACCGCCTTC AGCACCGACGGTCACGACCTCTACCTCTGCTGGAGCGGCTGGCCGCCCGGTGACCACAGCGACAAGCAGCAGAAC CTGTTCGTGGCCCGCATGGCCAGCCCTGTCGAGGTCGTCCCGGACACGGCCGTCTGCGTCTGCCACGCGGACCAG CCGTGGGAGCGGCCGGATGACGGCTCGCGCGGCGTCGCCGAGGGGCCGACCTGGGTCAACTTCCCGGGCTTCCGC GGCATCGTCTACTCGGCCTACGGCAGCTGGACCAGCGAGTACAAGCTGGGCTTGCTGGCCCTGGTCGGCAAGGAT CCGCTGCGGCCCGAGTCCTGGTCCAAGAGGCCGGCGCCGCTGCTGGTCAGCGACAAGGACCACGGCGGCCCGTTC GGGCCCGGCCACGCGAGCTTCCTCCCGAGTCCCTACAACGACGGCCGTCTCTTCTGCGTCTACCACGGCACCGCC AACTACGGAGAGGGATGGGGCAACCGGAAGGCCAGAGTCCTGAGCATGGGGCCGGAAATGTTCGCGCCCAATGCC GCGCCCACTTGCTGCCACTGCGCGAATGGCCTGCCCGGGGCCGGAGGAGGAGGAGGACCGTCGCGCCGGCGCCAG GTGCTGGACAAGGCGCCGCCCCAGGTCCAGGGATTTATTGGCAAAGTGAAGAAGTACTTTTGA |
Transcript | >Hirsu2|8003 ATGGAGGTTCGGAATCCCTTGCGCCTCCTCCTCCTCACCATCCTCTTCCTCATCACCATCCGGACAGCACAGATC CAGGCAGGCGGCGAGGAAAGACGGCCATCATCCAGCTCGGCATCCACAGGCAGCACCATGTCGAACAAGCCCATC TGCGATTGCGACACGCCGGACCCGTGGATCCTGGCCGCAAACGGCAAGTTCTACTTCACCTTCACGCTCGGCAAC CGTGTCGAGATATGGGCCTCGTCGCAGCTCGAGAACTTCCACGGCTGCCAGAAGGCCGTCGTCTGGCAGCCGGCG CCCGGCTCGCCCTGGTCCGAGGACGTCTGGGCGCCCGAGCTTCACCAGCTCAACGGCAAGTGGTACATCTACACC TGCGCCGCGCCGCCGGGCGTCGGGAACCCCGGCCACCGGACCCTCGTGCTCGAGTCGGACAAGAAGGACCCGATG GACCCGGCCGGGTGGAAGTTCCTGGGCCCGCTCAAGGGCATGCCCGACCACTGGTCCATCGATGCCACCGCCTTC AGCACCGACGGTCACGACCTCTACCTCTGCTGGAGCGGCTGGCCGCCCGGTGACCACAGCGACAAGCAGCAGAAC CTGTTCGTGGCCCGCATGGCCAGCCCTGTCGAGGTCGTCCCGGACACGGCCGTCTGCGTCTGCCACGCGGACCAG CCGTGGGAGCGGCCGGATGACGGCTCGCGCGGCGTCGCCGAGGGGCCGACCTGGGTCAACTTCCCGGGCTTCCGC GGCATCGTCTACTCGGCCTACGGCAGCTGGACCAGCGAGTACAAGCTGGGCTTGCTGGCCCTGGTCGGCAAGGAT CCGCTGCGGCCCGAGTCCTGGTCCAAGAGGCCGGCGCCGCTGCTGGTCAGCGACAAGGACCACGGCGGCCCGTTC GGGCCCGGCCACGCGAGCTTCCTCCCGAGTCCCTACAACGACGGCCGTCTCTTCTGCGTCTACCACGGCACCGCC AACTACGGAGAGGGATGGGGCAACCGGAAGGCCAGAGTCCTGAGCATGGGGCCGGAAATGTTCGCGCCCAATGCC GCGCCCACTTGCTGCCACTGCGCGAATGGCCTGCCCGGGGCCGGAGGAGGAGGAGGACCGTCGCGCCGGCGCCAG GTGCTGGACAAGGCGCCGCCCCAGGTCCAGGGATTTATTGGCAAAGTGAAGAAGTACTTTTGA |
Gene | >Hirsu2|8003 ATGGAGGTTCGGAATCCCTTGCGCCTCCTCCTCCTCACCATCCTCTTCCTCATCACCATCCGGACAGCACAGATC CAGGCAGGCGGCGAGGAAAGACGGCCATCATCCAGCTCGGCATCCACAGGCAGCACCATGTCGAACAAGCCCATC TGCGATTGCGACACGCCGGACCCGTGGATCCTGGCCGCAAACGGCAAGTTCTACTTCACCTTCACGCTCGGCAAC CGTGTCGAGATATGGGCCTCGTCGCAGCTCGAGAACTTCCACGGCTGCCAGAAGGCCGTCGTCTGGCAGCCGGCG CCCGGCTCGCCCTGGTCCGAGGACGTCTGGGCGCCCGAGCTTCACCAGCTCAACGGCAAGTGGTACATCTACACC TGCGCCGCGCCGCCGGGCGTCGGGAACCCCGGCCACCGGACCCTCGTGCTCGAGTCGGACAAGAAGGACCCGATG GACCCGGCCGGGTGGAAGTTCCTGGGCCCGCTCAAGGGCATGCCCGACCACTGGTCCATCGATGCCACCGCCTTC AGCACCGACGGTCACGACCTCTACCTCTGCTGGAGCGGCTGGCCGCCCGGTGACCACAGCGACAAGCAGCAGAAC CTGTTCGTGGCCCGCATGGCCAGCCCTGTCGAGGTCGTCCCGGACACGGCCGTCTGCGTCTGCCACGCGGACCAG CCGTGGGAGCGGCCGGATGACGGCTCGCGCGGCGTCGCCGAGGGGCCGACCTGGGTCAACTTCCCGGGCTTCCGC GGCATCGTCTACTCGGCCTACGGCAGCTGGACCAGCGAGTACAAGCTGGGCTTGCTGGCCCTGGTCGGCAAGGAT CCGCTGCGGCCCGAGTCCTGGTCCAAGAGGCCGGCGCCGCTGCTGGTCAGCGACAAGGACCACGGCGGCCCGTTC GGGCCCGGCCACGCGAGCTTCCTCCCGAGTCCCTACAACGACGGCCGTCTCTTCTGCGTCTACCACGGCACCGCC AACTACGGAGAGGGATGGGGCAACCGGAAGGCCAGAGTCCTGAGCATGGGGCCGGAAATGTTCGCGCCCAATGCC GCGCCCACTTGCTGCCACTGCGCGAATGGCCTGCCCGGGGCCGGAGGAGGAGGAGGACCGTCGCGCCGGCGCCAG GTGCTGGACAAGGCGCCGCCCCAGGTCCAGGGATTTATTGGCAAAGTGAAGAAGTACTTTTGA |