Protein ID | Hirsu2|8001 |
Gene name | |
Location | Contig_5:18696..19343 |
Strand | + |
Gene length (bp) | 647 |
Transcript length (bp) | 564 |
Coding sequence length (bp) | 564 |
Protein length (aa) | 188 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.1285 | 0.0628 | 0.9513 | 0.0741 | 0.0852 | 0.0202 | 0.183 | 0.2159 | 0.1183 | 0.0037 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 21 | 0.999716 |
Orthofinder run ID | 4 |
Orthogroup | 569 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|8001 MHLSAQFLVGSLLFLANKALSETPWIPCNRPETTDRLCYSASIGAVPQNLDVADVRAVAQNLREYGRSVTRFWTM NSNDAANCAEWTAFCSGSVMVFARLNGRQRASVSYEDIARTIDGTDDGVNSTEESNIGLLKCGSDGGQMPVLVNQ TSELYQRDDYKKLGLTNEGIIIKLVKSNKEMDACQYN* |
Coding | >Hirsu2|8001 ATGCATCTCTCGGCCCAGTTCCTCGTTGGCAGCTTGCTCTTCCTTGCCAACAAGGCCCTCTCCGAAACACCCTGG ATTCCCTGCAACAGGCCAGAGACAACGGACCGTCTCTGCTATTCCGCATCAATCGGTGCCGTGCCGCAGAACCTG GACGTTGCGGACGTGCGCGCAGTCGCCCAGAACCTTCGCGAGTACGGGCGCAGTGTGACACGCTTCTGGACGATG AACTCCAATGATGCCGCCAACTGCGCTGAGTGGACCGCCTTCTGCTCCGGCAGTGTCATGGTGTTTGCCAGGCTG AACGGCCGCCAGCGCGCGTCGGTCTCTTATGAAGATATCGCCCGGACCATTGACGGAACAGACGACGGAGTAAAC AGCACCGAGGAATCCAACATTGGGCTTCTCAAGTGCGGGAGCGATGGTGGTCAAATGCCTGTTCTCGTCAACCAG ACTTCCGAACTGTACCAAAGAGATGATTACAAGAAGTTGGGGCTCACGAATGAAGGCATTATTATCAAGCTCGTC AAGTCGAACAAAGAGATGGACGCTTGTCAGTACAATTAA |
Transcript | >Hirsu2|8001 ATGCATCTCTCGGCCCAGTTCCTCGTTGGCAGCTTGCTCTTCCTTGCCAACAAGGCCCTCTCCGAAACACCCTGG ATTCCCTGCAACAGGCCAGAGACAACGGACCGTCTCTGCTATTCCGCATCAATCGGTGCCGTGCCGCAGAACCTG GACGTTGCGGACGTGCGCGCAGTCGCCCAGAACCTTCGCGAGTACGGGCGCAGTGTGACACGCTTCTGGACGATG AACTCCAATGATGCCGCCAACTGCGCTGAGTGGACCGCCTTCTGCTCCGGCAGTGTCATGGTGTTTGCCAGGCTG AACGGCCGCCAGCGCGCGTCGGTCTCTTATGAAGATATCGCCCGGACCATTGACGGAACAGACGACGGAGTAAAC AGCACCGAGGAATCCAACATTGGGCTTCTCAAGTGCGGGAGCGATGGTGGTCAAATGCCTGTTCTCGTCAACCAG ACTTCCGAACTGTACCAAAGAGATGATTACAAGAAGTTGGGGCTCACGAATGAAGGCATTATTATCAAGCTCGTC AAGTCGAACAAAGAGATGGACGCTTGTCAGTACAATTAA |
Gene | >Hirsu2|8001 ATGCATCTCTCGGCCCAGTTCCTCGTTGGCAGCTTGCTCTTCCTTGCCAACAAGGCCCTCTCCGAAACACCCTGG ATTCCCTGCAACAGGCCAGAGACAACGGACCGTCTCTGCTATTCCGCATCAATCGGTGCCGTGCCGCAGAACCTG GACGTTGCGGACGTGCGCGCAGTCGCCCAGAACCTTCGCGAGTACGGGCGCAGTGTGACACGCTTCTGGACGATG AACTCCAATGATGCCGCCAACTGCGCTGAGTGGACCGCCTTCTGCTCCGGCAGTGTCATGGTGTTTGCCAGGCTG AACGGCCGCCAGCGCGCGTCGGTCTCTTATGAAGATATCGCCCGGACCATTGACGGAACAGACGACGGAGTAAAC AGCACCGAGGAATCCAACATTGGGCTTCTCAAGTGCGGGAGCGATGGTGGTATGACCTGCCTTTTCTTCGTCTCC TCTCAGCACGTCAACCCGCTCTGTGTGGGCACCGTATCAAGCTTACTCCTTTTGCAGGTCAAATGCCTGTTCTCG TCAACCAGACTTCCGAACTGTACCAAAGAGATGATTACAAGAAGTTGGGGCTCACGAATGAAGGCATTATTATCA AGCTCGTCAAGTCGAACAAAGAGATGGACGCTTGTCAGTACAATTAA |