Protein ID | Hirsu2|7977 |
Gene name | |
Location | Contig_496:2972..4538 |
Strand | - |
Gene length (bp) | 1566 |
Transcript length (bp) | 1566 |
Coding sequence length (bp) | 1566 |
Protein length (aa) | 522 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.1818 | 0.159 | 0.2753 | 0.315 | 0.1137 | 0.012 | 0.1992 | 0.3188 | 0.165 | 0.013 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 33 | 0.994613 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 5 | 27 | 22 |
2 | 74 | 96 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 952 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|7977 MPQALLVPLPHALPHLALVALAALVASQPAATGADGPQPLGGSRTVPSPASDLDDAPSLAARALRDPAYLPAEIG AIFAAYGVSLVLVAITLLSLAKKRRQHLKAAKDELVFESPADLYSPDHTPATFHHFPDPARPARVPNFSYPSPIK TDFNIPASPHLYPSPTSTVSGPGVDLAVDQRVVQADREMAQQQLEEMYKHVLEHDEAKQRGVVLEAPVLPGSAQA RATGSATPKKDKTKPANLNLGSPGQEKPQSKAHAFFSALRSPKKKSLKGVSISSPIMTPQSSTFSIRDSREMSAM TPRPYAPAPPTPALADQSSVAGSRASRAALPPPPPPPPDMSPQSVQSIDERISAQLGPPVSSRHASQATAELDPG SAVSMHSSAPSIGLPSSPKGGPRSPRSAPLPSSPQPGASFRRPNAPSAVRTGGTLPLRAYEPAMSSPSAMGYTTK QTVFERMGPLSPTTGRTPRTAGAVPYSPYQPHTPCIPVTPSLVTKEDRKRMKKMIPKTPTLEMVKSSEEMW* |
Coding | >Hirsu2|7977 ATGCCACAAGCGCTCCTCGTCCCCCTGCCCCATGCGCTGCCGCACCTCGCCCTCGTCGCCCTCGCCGCCCTCGTC GCGTCCCAGCCAGCAGCAACGGGCGCCGACGGCCCGCAACCCCTTGGCGGCAGCAGAACCGTCCCGTCTCCGGCG TCCGATCTAGACGACGCTCCCTCGCTCGCGGCCCGAGCCCTGCGCGATCCGGCCTACCTGCCCGCCGAGATTGGC GCCATCTTCGCCGCCTACGGCGTCTCCCTCGTCCTCGTCGCCATCACCCTCCTCTCGCTCGCCAAGAAGCGACGC CAGCACCTCAAGGCCGCCAAGGACGAGCTCGTCTTCGAGTCGCCCGCAGACCTCTACAGCCCGGACCACACGCCC GCCACCTTCCACCACTTCCCCGATCCCGCCCGGCCGGCAAGGGTCCCCAACTTCTCCTATCCCTCGCCCATCAAG ACCGACTTCAACATCCCGGCCAGCCCTCACCTGTACCCCTCGCCCACATCGACCGTCAGCGGCCCGGGAGTCGAT CTCGCCGTCGACCAGAGGGTCGTCCAAGCCGACAGAGAGATGGCGCAGCAACAGCTCGAGGAGATGTACAAGCAC GTGCTGGAGCACGACGAGGCCAAGCAACGGGGCGTCGTCCTCGAGGCCCCCGTGCTCCCCGGCTCGGCCCAGGCT CGCGCCACCGGCTCGGCGACGCCCAAGAAGGACAAGACCAAGCCGGCCAACCTGAATCTCGGCAGCCCGGGCCAG GAAAAGCCTCAATCCAAGGCGCACGCCTTCTTCTCCGCCCTCCGCTCCCCCAAGAAGAAGTCGCTCAAGGGCGTG TCCATCTCGTCGCCCATCATGACGCCCCAGTCCTCCACCTTCTCCATACGCGACTCCCGGGAAATGAGCGCCATG ACGCCCAGGCCCTACGCACCCGCGCCGCCGACTCCGGCCTTGGCCGATCAGTCGTCCGTCGCCGGCTCCAGGGCC AGTCGTGCCGCCCTACCGCCGCCGCCGCCGCCGCCTCCGGACATGTCACCACAGAGCGTGCAGAGCATCGATGAG CGGATCAGCGCACAGCTCGGCCCCCCGGTCAGCAGCCGACATGCCTCGCAGGCCACCGCCGAACTCGACCCGGGA TCGGCCGTGTCGATGCATTCGAGCGCCCCCTCCATCGGCCTGCCGTCGTCTCCCAAGGGCGGACCCAGATCGCCC CGGTCTGCTCCGCTTCCCTCGTCGCCCCAGCCGGGAGCCAGCTTCCGGCGGCCCAACGCGCCCTCGGCGGTCCGG ACCGGCGGCACCCTGCCGCTGCGCGCCTACGAGCCGGCCATGAGCTCCCCGTCTGCCATGGGCTACACCACCAAG CAGACCGTGTTCGAGAGAATGGGTCCCCTCTCTCCGACCACGGGCAGGACCCCCCGCACGGCCGGGGCCGTCCCG TACTCTCCGTACCAGCCGCACACCCCCTGTATACCGGTGACGCCATCCTTGGTTACCAAGGAAGACAGGAAGCGC ATGAAGAAGATGATACCCAAGACGCCCACCCTGGAGATGGTCAAGAGCTCCGAGGAGATGTGGTAG |
Transcript | >Hirsu2|7977 ATGCCACAAGCGCTCCTCGTCCCCCTGCCCCATGCGCTGCCGCACCTCGCCCTCGTCGCCCTCGCCGCCCTCGTC GCGTCCCAGCCAGCAGCAACGGGCGCCGACGGCCCGCAACCCCTTGGCGGCAGCAGAACCGTCCCGTCTCCGGCG TCCGATCTAGACGACGCTCCCTCGCTCGCGGCCCGAGCCCTGCGCGATCCGGCCTACCTGCCCGCCGAGATTGGC GCCATCTTCGCCGCCTACGGCGTCTCCCTCGTCCTCGTCGCCATCACCCTCCTCTCGCTCGCCAAGAAGCGACGC CAGCACCTCAAGGCCGCCAAGGACGAGCTCGTCTTCGAGTCGCCCGCAGACCTCTACAGCCCGGACCACACGCCC GCCACCTTCCACCACTTCCCCGATCCCGCCCGGCCGGCAAGGGTCCCCAACTTCTCCTATCCCTCGCCCATCAAG ACCGACTTCAACATCCCGGCCAGCCCTCACCTGTACCCCTCGCCCACATCGACCGTCAGCGGCCCGGGAGTCGAT CTCGCCGTCGACCAGAGGGTCGTCCAAGCCGACAGAGAGATGGCGCAGCAACAGCTCGAGGAGATGTACAAGCAC GTGCTGGAGCACGACGAGGCCAAGCAACGGGGCGTCGTCCTCGAGGCCCCCGTGCTCCCCGGCTCGGCCCAGGCT CGCGCCACCGGCTCGGCGACGCCCAAGAAGGACAAGACCAAGCCGGCCAACCTGAATCTCGGCAGCCCGGGCCAG GAAAAGCCTCAATCCAAGGCGCACGCCTTCTTCTCCGCCCTCCGCTCCCCCAAGAAGAAGTCGCTCAAGGGCGTG TCCATCTCGTCGCCCATCATGACGCCCCAGTCCTCCACCTTCTCCATACGCGACTCCCGGGAAATGAGCGCCATG ACGCCCAGGCCCTACGCACCCGCGCCGCCGACTCCGGCCTTGGCCGATCAGTCGTCCGTCGCCGGCTCCAGGGCC AGTCGTGCCGCCCTACCGCCGCCGCCGCCGCCGCCTCCGGACATGTCACCACAGAGCGTGCAGAGCATCGATGAG CGGATCAGCGCACAGCTCGGCCCCCCGGTCAGCAGCCGACATGCCTCGCAGGCCACCGCCGAACTCGACCCGGGA TCGGCCGTGTCGATGCATTCGAGCGCCCCCTCCATCGGCCTGCCGTCGTCTCCCAAGGGCGGACCCAGATCGCCC CGGTCTGCTCCGCTTCCCTCGTCGCCCCAGCCGGGAGCCAGCTTCCGGCGGCCCAACGCGCCCTCGGCGGTCCGG ACCGGCGGCACCCTGCCGCTGCGCGCCTACGAGCCGGCCATGAGCTCCCCGTCTGCCATGGGCTACACCACCAAG CAGACCGTGTTCGAGAGAATGGGTCCCCTCTCTCCGACCACGGGCAGGACCCCCCGCACGGCCGGGGCCGTCCCG TACTCTCCGTACCAGCCGCACACCCCCTGTATACCGGTGACGCCATCCTTGGTTACCAAGGAAGACAGGAAGCGC ATGAAGAAGATGATACCCAAGACGCCCACCCTGGAGATGGTCAAGAGCTCCGAGGAGATGTGGTAG |
Gene | >Hirsu2|7977 ATGCCACAAGCGCTCCTCGTCCCCCTGCCCCATGCGCTGCCGCACCTCGCCCTCGTCGCCCTCGCCGCCCTCGTC GCGTCCCAGCCAGCAGCAACGGGCGCCGACGGCCCGCAACCCCTTGGCGGCAGCAGAACCGTCCCGTCTCCGGCG TCCGATCTAGACGACGCTCCCTCGCTCGCGGCCCGAGCCCTGCGCGATCCGGCCTACCTGCCCGCCGAGATTGGC GCCATCTTCGCCGCCTACGGCGTCTCCCTCGTCCTCGTCGCCATCACCCTCCTCTCGCTCGCCAAGAAGCGACGC CAGCACCTCAAGGCCGCCAAGGACGAGCTCGTCTTCGAGTCGCCCGCAGACCTCTACAGCCCGGACCACACGCCC GCCACCTTCCACCACTTCCCCGATCCCGCCCGGCCGGCAAGGGTCCCCAACTTCTCCTATCCCTCGCCCATCAAG ACCGACTTCAACATCCCGGCCAGCCCTCACCTGTACCCCTCGCCCACATCGACCGTCAGCGGCCCGGGAGTCGAT CTCGCCGTCGACCAGAGGGTCGTCCAAGCCGACAGAGAGATGGCGCAGCAACAGCTCGAGGAGATGTACAAGCAC GTGCTGGAGCACGACGAGGCCAAGCAACGGGGCGTCGTCCTCGAGGCCCCCGTGCTCCCCGGCTCGGCCCAGGCT CGCGCCACCGGCTCGGCGACGCCCAAGAAGGACAAGACCAAGCCGGCCAACCTGAATCTCGGCAGCCCGGGCCAG GAAAAGCCTCAATCCAAGGCGCACGCCTTCTTCTCCGCCCTCCGCTCCCCCAAGAAGAAGTCGCTCAAGGGCGTG TCCATCTCGTCGCCCATCATGACGCCCCAGTCCTCCACCTTCTCCATACGCGACTCCCGGGAAATGAGCGCCATG ACGCCCAGGCCCTACGCACCCGCGCCGCCGACTCCGGCCTTGGCCGATCAGTCGTCCGTCGCCGGCTCCAGGGCC AGTCGTGCCGCCCTACCGCCGCCGCCGCCGCCGCCTCCGGACATGTCACCACAGAGCGTGCAGAGCATCGATGAG CGGATCAGCGCACAGCTCGGCCCCCCGGTCAGCAGCCGACATGCCTCGCAGGCCACCGCCGAACTCGACCCGGGA TCGGCCGTGTCGATGCATTCGAGCGCCCCCTCCATCGGCCTGCCGTCGTCTCCCAAGGGCGGACCCAGATCGCCC CGGTCTGCTCCGCTTCCCTCGTCGCCCCAGCCGGGAGCCAGCTTCCGGCGGCCCAACGCGCCCTCGGCGGTCCGG ACCGGCGGCACCCTGCCGCTGCGCGCCTACGAGCCGGCCATGAGCTCCCCGTCTGCCATGGGCTACACCACCAAG CAGACCGTGTTCGAGAGAATGGGTCCCCTCTCTCCGACCACGGGCAGGACCCCCCGCACGGCCGGGGCCGTCCCG TACTCTCCGTACCAGCCGCACACCCCCTGTATACCGGTGACGCCATCCTTGGTTACCAAGGAAGACAGGAAGCGC ATGAAGAAGATGATACCCAAGACGCCCACCCTGGAGATGGTCAAGAGCTCCGAGGAGATGTGGTAG |