© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|7941 |
| Gene name | |
| Location | Contig_490:15837..17609 |
| Strand | + |
| Gene length (bp) | 1772 |
| Transcript length (bp) | 1515 |
| Coding sequence length (bp) | 1515 |
| Protein length (aa) | 505 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00996 | GDI | GDP dissociation inhibitor | 1.1E-21 | 6 | 310 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P32864|RAEP_YEAST | Rab proteins geranylgeranyltransferase component A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRS6 PE=1 SV=2 | 10 | 419 | 4.0E-54 |
| sp|O93831|RAEP_CANAX | Rab proteins geranylgeranyltransferase component A OS=Candida albicans GN=MRS6 PE=3 SV=1 | 10 | 419 | 5.0E-37 |
| sp|O60112|YG63_SCHPO | Uncharacterized Rab geranylgeranyltransferase C15C4.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15C4.03 PE=3 SV=1 | 9 | 414 | 7.0E-29 |
| sp|Q9V8W3|RABEP_DROME | Rab proteins geranylgeranyltransferase component A OS=Drosophila melanogaster GN=Rep PE=2 SV=1 | 8 | 280 | 1.0E-20 |
| sp|Q9QXG2|RAE1_MOUSE | Rab proteins geranylgeranyltransferase component A 1 OS=Mus musculus GN=Chm PE=1 SV=1 | 87 | 437 | 1.0E-18 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P32864|RAEP_YEAST | Rab proteins geranylgeranyltransferase component A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRS6 PE=1 SV=2 | 10 | 419 | 4.0E-54 |
| sp|O93831|RAEP_CANAX | Rab proteins geranylgeranyltransferase component A OS=Candida albicans GN=MRS6 PE=3 SV=1 | 10 | 419 | 5.0E-37 |
| sp|O60112|YG63_SCHPO | Uncharacterized Rab geranylgeranyltransferase C15C4.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15C4.03 PE=3 SV=1 | 9 | 414 | 7.0E-29 |
| sp|Q9V8W3|RABEP_DROME | Rab proteins geranylgeranyltransferase component A OS=Drosophila melanogaster GN=Rep PE=2 SV=1 | 8 | 280 | 1.0E-20 |
| sp|Q9QXG2|RAE1_MOUSE | Rab proteins geranylgeranyltransferase component A 1 OS=Mus musculus GN=Chm PE=1 SV=1 | 87 | 437 | 1.0E-18 |
| sp|P37727|RAE1_RAT | Rab proteins geranylgeranyltransferase component A 1 OS=Rattus norvegicus GN=Chm PE=1 SV=1 | 41 | 437 | 1.0E-17 |
| sp|Q9LXC0|GDI_ARATH | Guanosine nucleotide diphosphate dissociation inhibitor At5g09550 OS=Arabidopsis thaliana GN=At5g09550 PE=3 SV=1 | 6 | 274 | 2.0E-15 |
| sp|P24386|RAE1_HUMAN | Rab proteins geranylgeranyltransferase component A 1 OS=Homo sapiens GN=CHM PE=1 SV=3 | 87 | 437 | 4.0E-15 |
| sp|P26374|RAE2_HUMAN | Rab proteins geranylgeranyltransferase component A 2 OS=Homo sapiens GN=CHML PE=1 SV=2 | 87 | 277 | 2.0E-14 |
| sp|Q96254|GDI1_ARATH | Guanosine nucleotide diphosphate dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1 | 6 | 401 | 3.0E-14 |
| sp|Q10305|GDI1_SCHPO | Probable secretory pathway GDP dissociation inhibitor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gdi1 PE=3 SV=1 | 6 | 396 | 4.0E-14 |
| sp|Q9QZD5|RAE2_MOUSE | Rab proteins geranylgeranyltransferase component A 2 OS=Mus musculus GN=Chml PE=2 SV=2 | 86 | 439 | 5.0E-14 |
| sp|O24653|GDI2_ARATH | Guanosine nucleotide diphosphate dissociation inhibitor 2 OS=Arabidopsis thaliana GN=GDI2 PE=2 SV=1 | 6 | 291 | 1.0E-13 |
| sp|O97555|GDIA_CANLF | Rab GDP dissociation inhibitor alpha OS=Canis lupus familiaris GN=GDI1 PE=2 SV=1 | 6 | 280 | 4.0E-13 |
| sp|Q7YQM0|GDIA_PONPY | Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2 SV=1 | 6 | 280 | 6.0E-13 |
| sp|P50398|GDIA_RAT | Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1 PE=1 SV=1 | 6 | 280 | 7.0E-13 |
| sp|Q8HXX7|GDIA_MACFA | Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis GN=GDI1 PE=2 SV=1 | 6 | 280 | 7.0E-13 |
| sp|P50396|GDIA_MOUSE | Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3 | 6 | 280 | 7.0E-13 |
| sp|P21856|GDIA_BOVIN | Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1 | 6 | 280 | 1.0E-12 |
| sp|P60028|GDIA_PANTR | Rab GDP dissociation inhibitor alpha OS=Pan troglodytes GN=GDI1 PE=2 SV=1 | 6 | 280 | 1.0E-12 |
| sp|P31150|GDIA_HUMAN | Rab GDP dissociation inhibitor alpha OS=Homo sapiens GN=GDI1 PE=1 SV=2 | 6 | 280 | 1.0E-12 |
| sp|P39958|GDI1_YEAST | Rab GDP-dissociation inhibitor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GDI1 PE=1 SV=1 | 6 | 298 | 7.0E-12 |
| sp|Q6Q7J2|GDIB_PIG | Rab GDP dissociation inhibitor beta OS=Sus scrofa GN=GDI2 PE=2 SV=1 | 6 | 280 | 3.0E-11 |
| sp|Q61598|GDIB_MOUSE | Rab GDP dissociation inhibitor beta OS=Mus musculus GN=Gdi2 PE=1 SV=1 | 6 | 280 | 4.0E-11 |
| sp|O97556|GDIB_CANLF | Rab GDP dissociation inhibitor beta OS=Canis lupus familiaris GN=GDI2 PE=2 SV=1 | 6 | 280 | 4.0E-11 |
| sp|P50399|GDIB_RAT | Rab GDP dissociation inhibitor beta OS=Rattus norvegicus GN=Gdi2 PE=1 SV=2 | 6 | 280 | 4.0E-11 |
| sp|P50397|GDIB_BOVIN | Rab GDP dissociation inhibitor beta OS=Bos taurus GN=GDI2 PE=2 SV=3 | 6 | 280 | 9.0E-11 |
| sp|P50395|GDIB_HUMAN | Rab GDP dissociation inhibitor beta OS=Homo sapiens GN=GDI2 PE=1 SV=2 | 6 | 280 | 2.0E-10 |
| sp|Q5RCE1|GDIB_PONAB | Rab GDP dissociation inhibitor beta OS=Pongo abelii GN=GDI2 PE=2 SV=1 | 6 | 280 | 2.0E-10 |
| sp|Q9QZD5|RAE2_MOUSE | Rab proteins geranylgeranyltransferase component A 2 OS=Mus musculus GN=Chml PE=2 SV=2 | 7 | 65 | 5.0E-07 |
| sp|P26374|RAE2_HUMAN | Rab proteins geranylgeranyltransferase component A 2 OS=Homo sapiens GN=CHML PE=1 SV=2 | 7 | 65 | 6.0E-07 |
| sp|P24386|RAE1_HUMAN | Rab proteins geranylgeranyltransferase component A 1 OS=Homo sapiens GN=CHM PE=1 SV=3 | 7 | 87 | 1.0E-06 |
| sp|P37727|RAE1_RAT | Rab proteins geranylgeranyltransferase component A 1 OS=Rattus norvegicus GN=Chm PE=1 SV=1 | 9 | 63 | 1.0E-05 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0007264 | small GTPase mediated signal transduction | Yes |
| GO:0005092 | GDP-dissociation inhibitor activity | Yes |
| GO:0050789 | regulation of biological process | No |
| GO:0009987 | cellular process | No |
| GO:0007165 | signal transduction | No |
| GO:0060589 | nucleoside-triphosphatase regulator activity | No |
| GO:0030695 | GTPase regulator activity | No |
| GO:0098772 | molecular function regulator activity | No |
| GO:0008150 | biological_process | No |
| GO:0030234 | enzyme regulator activity | No |
| GO:0065007 | biological regulation | No |
| GO:0003674 | molecular_function | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0035556 | intracellular signal transduction | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|7941 MESLSDTRWDVVISGTGLQQSLLALALSRSDKAILHLDPNGYYGGSEAALSLQEVDEWVDKHRATESGSPFAAAH LDKAGDGLSFSRAYSLALAPQLIHTRSLLLSQLVSSKAFRQVEFLAVGSFYIFHPASGSSGTPSLGRVPSTREDV FAATAIPPRSKRALMKFLKFVLGYDAEPQEEVWKPRADEELTAFLESEFKLDRELQLYVVALTLSLDGRISVGAG LAAIHRHLTSMGLFGPGFAAVYPKWGGLSEVAQVGCRAAAVGGAVYMLGTGVSDVTRVASADDGGESGLQVTLSN DVVVKTQTLVQGSSTPSAGAAAIRRLTAVIDSGLSLVFGAVVEDAPTPCVAVVAFPRGSITASDGTTSDFPIYAL VHSSDTGECPAGQCTVYLSTMSGPQSRQMLEAALSSLLTALAPEGERPTCLYRLGYEQRGGTGAFMADGGIGTFA LPSLELALPDSAVAPVREAWAMVTGGDGADGEGYMRFEDREGVADDEDALHGAE* |
| Coding | >Hirsu2|7941 ATGGAAAGCCTTTCAGACACTCGGTGGGATGTCGTGATCAGCGGCACCGGCCTCCAGCAGTCCCTCCTGGCCCTG GCGTTGTCGCGGTCAGACAAGGCCATACTGCACCTTGACCCCAATGGCTACTATGGCGGGTCGGAGGCAGCCCTC AGCCTGCAGGAGGTGGACGAGTGGGTGGACAAGCACCGGGCCACAGAGTCCGGCAGTCCCTTCGCGGCAGCGCAT CTGGACAAGGCCGGCGACGGACTGTCGTTCTCGCGAGCCTACAGCCTGGCCCTGGCGCCACAGCTGATCCATACG CGATCCCTGCTCCTGTCGCAGCTGGTCTCGTCAAAGGCCTTCCGTCAGGTCGAGTTTCTCGCCGTCGGATCCTTC TACATCTTCCACCCGGCGTCTGGCTCCTCTGGGACGCCGAGCCTCGGCCGGGTGCCCTCGACGCGAGAGGACGTC TTCGCCGCCACGGCGATACCACCTCGGTCCAAGCGTGCCTTGATGAAGTTTCTCAAGTTCGTGCTCGGATACGAT GCGGAGCCGCAAGAAGAGGTGTGGAAGCCGCGGGCGGACGAGGAGCTGACGGCCTTTCTCGAGTCGGAGTTCAAG CTGGATCGCGAGCTGCAGCTCTACGTCGTCGCCCTGACACTCAGTCTGGATGGCAGAATATCGGTCGGAGCCGGA CTCGCCGCTATACACCGCCACCTGACCTCTATGGGACTTTTCGGCCCGGGCTTCGCTGCCGTCTACCCCAAGTGG GGTGGTCTATCCGAGGTCGCCCAAGTGGGCTGCCGTGCCGCCGCCGTCGGTGGCGCCGTCTACATGCTGGGGACG GGCGTCTCAGACGTTACAAGAGTAGCCTCTGCGGATGACGGCGGCGAGTCCGGGCTTCAAGTCACACTTTCCAAC GACGTCGTCGTCAAGACACAAACCTTGGTCCAAGGCTCAAGCACCCCTTCCGCCGGAGCTGCAGCCATTCGCCGG CTCACCGCCGTCATCGACTCGGGCTTATCCCTGGTCTTCGGGGCTGTCGTCGAGGACGCTCCCACGCCGTGTGTG GCGGTGGTAGCGTTCCCACGAGGGTCGATCACGGCCTCTGACGGCACCACCTCCGACTTCCCGATATACGCACTG GTGCACTCGAGCGACACGGGCGAATGCCCCGCAGGTCAATGCACTGTATACCTGAGTACGATGTCCGGGCCGCAG TCGAGGCAGATGCTGGAAGCGGCACTGTCGTCGCTCCTCACCGCCCTGGCGCCGGAAGGCGAGAGGCCCACGTGC CTGTACAGGCTGGGCTACGAGCAGAGGGGCGGCACGGGCGCGTTCATGGCGGACGGCGGCATCGGCACCTTCGCC CTGCCGTCGCTGGAGCTGGCGCTGCCCGACTCGGCCGTCGCGCCCGTCCGCGAGGCCTGGGCCATGGTGACGGGC GGCGACGGGGCCGACGGCGAGGGTTACATGAGGTTCGAGGACAGGGAGGGAGTGGCAGACGACGAGGACGCCTTG CACGGCGCGGAGTGA |
| Transcript | >Hirsu2|7941 ATGGAAAGCCTTTCAGACACTCGGTGGGATGTCGTGATCAGCGGCACCGGCCTCCAGCAGTCCCTCCTGGCCCTG GCGTTGTCGCGGTCAGACAAGGCCATACTGCACCTTGACCCCAATGGCTACTATGGCGGGTCGGAGGCAGCCCTC AGCCTGCAGGAGGTGGACGAGTGGGTGGACAAGCACCGGGCCACAGAGTCCGGCAGTCCCTTCGCGGCAGCGCAT CTGGACAAGGCCGGCGACGGACTGTCGTTCTCGCGAGCCTACAGCCTGGCCCTGGCGCCACAGCTGATCCATACG CGATCCCTGCTCCTGTCGCAGCTGGTCTCGTCAAAGGCCTTCCGTCAGGTCGAGTTTCTCGCCGTCGGATCCTTC TACATCTTCCACCCGGCGTCTGGCTCCTCTGGGACGCCGAGCCTCGGCCGGGTGCCCTCGACGCGAGAGGACGTC TTCGCCGCCACGGCGATACCACCTCGGTCCAAGCGTGCCTTGATGAAGTTTCTCAAGTTCGTGCTCGGATACGAT GCGGAGCCGCAAGAAGAGGTGTGGAAGCCGCGGGCGGACGAGGAGCTGACGGCCTTTCTCGAGTCGGAGTTCAAG CTGGATCGCGAGCTGCAGCTCTACGTCGTCGCCCTGACACTCAGTCTGGATGGCAGAATATCGGTCGGAGCCGGA CTCGCCGCTATACACCGCCACCTGACCTCTATGGGACTTTTCGGCCCGGGCTTCGCTGCCGTCTACCCCAAGTGG GGTGGTCTATCCGAGGTCGCCCAAGTGGGCTGCCGTGCCGCCGCCGTCGGTGGCGCCGTCTACATGCTGGGGACG GGCGTCTCAGACGTTACAAGAGTAGCCTCTGCGGATGACGGCGGCGAGTCCGGGCTTCAAGTCACACTTTCCAAC GACGTCGTCGTCAAGACACAAACCTTGGTCCAAGGCTCAAGCACCCCTTCCGCCGGAGCTGCAGCCATTCGCCGG CTCACCGCCGTCATCGACTCGGGCTTATCCCTGGTCTTCGGGGCTGTCGTCGAGGACGCTCCCACGCCGTGTGTG GCGGTGGTAGCGTTCCCACGAGGGTCGATCACGGCCTCTGACGGCACCACCTCCGACTTCCCGATATACGCACTG GTGCACTCGAGCGACACGGGCGAATGCCCCGCAGGTCAATGCACTGTATACCTGAGTACGATGTCCGGGCCGCAG TCGAGGCAGATGCTGGAAGCGGCACTGTCGTCGCTCCTCACCGCCCTGGCGCCGGAAGGCGAGAGGCCCACGTGC CTGTACAGGCTGGGCTACGAGCAGAGGGGCGGCACGGGCGCGTTCATGGCGGACGGCGGCATCGGCACCTTCGCC CTGCCGTCGCTGGAGCTGGCGCTGCCCGACTCGGCCGTCGCGCCCGTCCGCGAGGCCTGGGCCATGGTGACGGGC GGCGACGGGGCCGACGGCGAGGGTTACATGAGGTTCGAGGACAGGGAGGGAGTGGCAGACGACGAGGACGCCTTG CACGGCGCGGAGTGA |
| Gene | >Hirsu2|7941 ATGGAAAGCCTTTCAGACACTCGGTGGGATGTCGTGATCAGCGGCACCGGCCTCCAGCAGTCCCTCCTGGCCCTG TAAGCACAGGCTCTGTACGGCGCGGCTATCAAACTGACTGACCAGCCGGTCCCGCCGGGCGCAGGGCGTTGTCGC GGTCAGACAAGGCCATACTGCACCTTGACCCCAATGGCTACTATGGCGGGTCGGAGGCAGCCCTCAGCCTGCAGG AGGTGGACGAGTGGGTGGACAAGCACCGGGCCACAGAGTCCGGCAGTCCCTTCGCGGCAGCGCATCTGGACAAGG CCGGCGACGGACTGTCGTTCTCGCGAGCCTACAGCCTGGCCCTGGCGCCACAGCTGATCCATACGCGATCCCTGC TCCTGTCGCAGCTGGTCTCGTCAAAGGCCTTCCGTCAGGTCGAGTTTCTCGCCGTCGGATCCTTCTACATCTTCC ACCCGGCGTCTGGCTCCTCTGGGACGCCGAGCCTCGGCCGGGTGCCCTCGACGCGAGAGGACGTCTTCGCCGCCA CGGCGATACCACCTCGGTCCAAGCGTGCCTTGATGAAGTTTCTCAAGTTCGTGCTCGGATACGATGCGGAGCCGC AAGAAGAGGTGTGGAAGCCGCGGGCGGACGAGGAGCTGACGGCCTTTCTCGAGTCGGAGTTCAAGCTGGATCGCG AGCTGCAGCTCTACGTCGTCGCCCTGACACTCAGTCTGGATGGCAGAATATCGGTCGGAGCCGGACTCGCCGCTA TACACCGCCACCTGACCTCTATGGGACTTTTCGGCCCGGGCTTCGCTGCCGTCTACCCCAAGTGGGGTGGTCTAT CCGAGGTCGCCCAAGTGGGCTGCCGTGCCGCCGCCGTCGGTGGCGCCGTCTACATGCTGGGGACGGGCGTCTCAG ACGTTACAAGAGTAGCCTCTGCGGATGACGGCGGCGAGTCCGGGCTTCAAGTCACACTTTCCAACGACGTCGTCG TCAAGACACAAACCTTGGTCCAAGGCTCAAGCACCCCTTCCGCCGGAGCTGCAGCCATTCGCCGGCTCACCGCCG TCATCGACTCGGGCTTATCCCTGGTCTTCGGGGCTGTCGTCGAGGACGCTCCCACGCCGTGTGTGGCGGTGGTAG CGTTCCCACGAGGGTCGATCACGGCCTCTGACGGCACCACCTCCGACTTCCCGATATACGCACTGGTGCACTCGA GCGACACGGGCGAATGCCCCGCAGGTCAATGTGAGCCATCTTGATTTCTTGTCTCGTCCCCCCCGTGTGCTATGA TGATTTCTCAACAAACGAATACTTATCTACATTGTCTGATTTTCAATGACGACATGATACTCTGACAACCTGATT GCGCACCCATCTCACCTAGCCCCTTGTCGCGGAAGATGCTTTGGGACCACCGTCGCTGACCCGTCTCTGCAGGCA CTGTATACCTGAGTACGATGTCCGGGCCGCAGTCGAGGCAGATGCTGGAAGCGGCACTGTCGTCGCTCCTCACCG CCCTGGCGCCGGAAGGCGAGAGGCCCACGTGCCTGTACAGGCTGGGCTACGAGCAGAGGGGCGGCACGGGCGCGT TCATGGCGGACGGCGGCATCGGCACCTTCGCCCTGCCGTCGCTGGAGCTGGCGCTGCCCGACTCGGCCGTCGCGC CCGTCCGCGAGGCCTGGGCCATGGTGACGGGCGGCGACGGGGCCGACGGCGAGGGTTACATGAGGTTCGAGGACA GGGAGGGAGTGGCAGACGACGAGGACGCCTTGCACGGCGCGGAGTGA |