Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|7918
Gene name
LocationContig_49:1113..2907
Strand-
Gene length (bp)1794
Transcript length (bp)1794
Coding sequence length (bp)1794
Protein length (aa) 598

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04791 LMBR1 LMBR1-like membrane protein 4.3E-18 20 284

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|A4RE85|LMBD1_MAGO7 Probable lysosomal cobalamin transporter OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=MGG_00740 PE=3 SV=1 9 595 0.0E+00
sp|Q7SDN3|LMBD1_NEUCR Probable lysosomal cobalamin transporter OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU02100 PE=3 SV=2 5 594 0.0E+00
sp|A6RN41|LMBD1_BOTFB Probable lysosomal cobalamin transporter OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_01863 PE=3 SV=1 10 585 0.0E+00
sp|B2AA26|LMBD1_PODAN Probable lysosomal cobalamin transporter OS=Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) GN=PODANS_1_2600 PE=3 SV=1 7 584 0.0E+00
sp|A7F2V9|LMBD1_SCLS1 Probable lysosomal cobalamin transporter OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=SS1G_12257 PE=3 SV=1 11 595 0.0E+00
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Swissprot ID Swissprot Description Start End E-value
sp|A4RE85|LMBD1_MAGO7 Probable lysosomal cobalamin transporter OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=MGG_00740 PE=3 SV=1 9 595 0.0E+00
sp|Q7SDN3|LMBD1_NEUCR Probable lysosomal cobalamin transporter OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU02100 PE=3 SV=2 5 594 0.0E+00
sp|A6RN41|LMBD1_BOTFB Probable lysosomal cobalamin transporter OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_01863 PE=3 SV=1 10 585 0.0E+00
sp|B2AA26|LMBD1_PODAN Probable lysosomal cobalamin transporter OS=Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) GN=PODANS_1_2600 PE=3 SV=1 7 584 0.0E+00
sp|A7F2V9|LMBD1_SCLS1 Probable lysosomal cobalamin transporter OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=SS1G_12257 PE=3 SV=1 11 595 0.0E+00
sp|Q0UUE1|LMBD1_PHANO Probable lysosomal cobalamin transporter OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=SNOG_04623 PE=3 SV=1 11 591 0.0E+00
sp|B2WCU2|LMBD1_PYRTR Probable lysosomal cobalamin transporter OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP) GN=PTRG_07801 PE=3 SV=1 10 591 0.0E+00
sp|Q0D219|LMBD1_ASPTN Probable lysosomal cobalamin transporter OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ATEG_00015 PE=3 SV=1 10 588 0.0E+00
sp|Q2TZ20|LMBD1_ASPOR Probable lysosomal cobalamin transporter OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=AO090103000016 PE=3 SV=1 10 596 0.0E+00
sp|A6QTW5|LMBD1_AJECN Probable lysosomal cobalamin transporter OS=Ajellomyces capsulatus (strain NAm1 / WU24) GN=HCAG_00821 PE=3 SV=1 10 597 0.0E+00
sp|Q1E5A9|LMBD1_COCIM Probable lysosomal cobalamin transporter OS=Coccidioides immitis (strain RS) GN=CIMG_02254 PE=3 SV=1 10 586 0.0E+00
sp|A2R920|LMBD1_ASPNC Probable lysosomal cobalamin transporter OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=An16g09150 PE=3 SV=1 10 581 0.0E+00
sp|Q2HDJ0|LMBD1_CHAGB Probable lysosomal cobalamin transporter OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=CHGG_01714 PE=3 SV=1 7 559 0.0E+00
sp|Q5BDG8|LMBD1_EMENI Probable lysosomal cobalamin transporter OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=AN1412 PE=3 SV=2 11 588 0.0E+00
sp|A1C3U0|LMBD1_ASPCL Probable lysosomal cobalamin transporter OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=ACLA_057360 PE=3 SV=1 16 572 0.0E+00
sp|A1DB12|LMBD1_NEOFI Probable lysosomal cobalamin transporter OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=NFIA_096740 PE=3 SV=1 15 574 3.0E-178
sp|Q4WCL2|LMBD1_ASPFU Probable lysosomal cobalamin transporter OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=AFUA_8G04030 PE=3 SV=1 15 530 6.0E-168
sp|B0YA61|LMBD1_ASPFC Probable lysosomal cobalamin transporter OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=AFUB_083530 PE=3 SV=1 15 530 6.0E-168
sp|A7RM45|LMBD1_NEMVE Probable lysosomal cobalamin transporter OS=Nematostella vectensis GN=v1g160387 PE=3 SV=1 18 560 2.0E-74
sp|Q5PR61|LMBD1_DANRE Probable lysosomal cobalamin transporter OS=Danio rerio GN=lmbrd1 PE=2 SV=1 9 539 6.0E-66
sp|Q0VGV9|LMBD1_XENTR Probable lysosomal cobalamin transporter OS=Xenopus tropicalis GN=lmbrd1 PE=2 SV=1 18 545 1.0E-60
sp|Q3SYY9|LMBD1_BOVIN Probable lysosomal cobalamin transporter OS=Bos taurus GN=LMBRD1 PE=2 SV=1 18 539 3.0E-60
sp|Q9NUN5|LMBD1_HUMAN Probable lysosomal cobalamin transporter OS=Homo sapiens GN=LMBRD1 PE=1 SV=1 1 534 4.0E-60
sp|Q4R5E3|LMBD1_MACFA Probable lysosomal cobalamin transporter OS=Macaca fascicularis GN=LMBRD1 PE=2 SV=1 1 534 6.0E-60
sp|Q7SYR6|LMBD1_XENLA Probable lysosomal cobalamin transporter OS=Xenopus laevis GN=lmbrd1 PE=2 SV=1 18 545 5.0E-59
sp|Q8K0B2|LMBD1_MOUSE Probable lysosomal cobalamin transporter OS=Mus musculus GN=Lmbrd1 PE=1 SV=1 29 534 1.0E-58
sp|Q5ZI05|LMBD1_CHICK Probable lysosomal cobalamin transporter OS=Gallus gallus GN=LMBRD1 PE=2 SV=1 18 534 2.0E-58
sp|Q6AZ61|LMBD1_RAT Probable lysosomal cobalamin transporter OS=Rattus norvegicus GN=Lmbrd1 PE=1 SV=1 39 534 9.0E-57
sp|Q54KD1|LMBD1_DICDI Probable lysosomal cobalamin transporter OS=Dictyostelium discoideum GN=lmbrd1 PE=3 SV=1 15 561 2.0E-55
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 23 0.5

Transmembrane Domains

Domain # Start End Length
1 15 34 19
2 47 69 22
3 103 125 22
4 152 174 22
5 203 225 22
6 322 344 22
7 385 407 22
8 427 449 22
9 522 541 19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|7918
MAAVIAADAGLVHTSLIWVAYAVAVACCLLAAIITTFTWQTPRDRSAVVSLVATVSLTALLATVLLLPVDIALVS
ATASPALGAKKSWATPERIADILLTLKIVYYSLYSLDALLCLIVIPFAYFWYEEYDEIEFEEEGRSWTSRFWAAT
KYTLFFALLVLVLFLLGFFVPAAGRSSRAHWDLDYFKRLIAQNHGEKALTFALGLLMTLGTLLYVVYTGAGLALL
PVSFIKSAPAISAPQLSATTASQLEQNRERQRQLEMRNAGRDDGMPRKDRRELEALVREEQTLVRRARLASEAQG
EGRSRVYQAWLRLCALFRPVKMLGGILLLALSLLIWVSMLITGIDKAKNSVCKQHCGYILGHIHLFQPVNWIFVQ
AAKAFPVDYVLMALLVLFLFSSSVSGIATVGIRFLWIRVFQIRRGRTAPQALLTATVMMALVILAINYALAMVVA
PQYSIYGTQTFCTNEPDGPGAQPVCEPGSDRIRPCSELLDQKHARDVCTPSVMSTFLNRINITWPFFGVLDFWAQ
FAFLAVFLVVFVTALFRTPRLSMSELDEDAEADEEESLLATTGRRFGATWQDVRGRAAESRGTASTGQAGAR*
Coding >Hirsu2|7918
ATGGCCGCCGTCATCGCGGCCGACGCCGGCCTCGTCCACACGAGCCTCATCTGGGTCGCCTACGCCGTCGCCGTC
GCCTGCTGTCTGCTGGCGGCCATCATCACCACCTTCACCTGGCAGACGCCGCGCGACCGGTCGGCCGTCGTCAGC
CTCGTCGCCACCGTCTCCCTCACGGCCCTCCTGGCCACGGTCCTGCTGCTGCCGGTCGACATCGCCCTCGTCTCG
GCCACGGCCTCGCCCGCGCTCGGCGCCAAGAAGAGCTGGGCCACGCCCGAGCGCATCGCCGACATCCTCTTGACG
CTCAAGATCGTCTACTACTCGCTCTACAGTCTCGACGCCCTTCTGTGCCTCATCGTCATCCCCTTCGCCTACTTC
TGGTACGAGGAGTACGATGAGATTGAGTTCGAGGAGGAGGGCCGCTCCTGGACGAGCCGCTTCTGGGCCGCCACC
AAGTACACCCTCTTCTTCGCCCTCCTCGTCCTCGTCCTCTTCCTCCTCGGCTTCTTCGTCCCCGCCGCCGGCCGC
TCCTCGCGCGCCCACTGGGACCTCGACTACTTCAAGCGCCTCATCGCCCAGAACCACGGCGAGAAGGCGCTGACC
TTCGCCCTCGGCCTGCTCATGACGCTCGGCACCCTCCTCTACGTCGTCTACACCGGCGCCGGCCTCGCCCTCTTG
CCCGTCTCCTTCATCAAGTCGGCCCCCGCCATCTCGGCGCCCCAGCTGTCCGCCACCACCGCCTCGCAGCTGGAG
CAGAACCGCGAGCGCCAGCGCCAGCTCGAGATGCGCAACGCCGGCCGCGACGACGGCATGCCGCGCAAGGACAGG
CGCGAGCTCGAGGCCCTCGTCAGGGAGGAGCAGACGCTGGTCCGCCGCGCGCGCCTCGCCTCCGAGGCCCAGGGC
GAGGGCCGCAGCCGCGTCTACCAGGCCTGGCTCCGGCTCTGCGCCCTCTTCCGCCCCGTCAAGATGCTGGGCGGC
ATCCTGCTGCTGGCCCTGTCGCTCCTGATCTGGGTCTCCATGCTCATCACCGGCATCGACAAGGCCAAGAACTCG
GTCTGCAAGCAGCACTGCGGCTACATCCTCGGCCACATCCACCTCTTCCAGCCCGTCAACTGGATCTTCGTCCAG
GCGGCCAAGGCCTTCCCCGTCGACTACGTCCTCATGGCCCTCCTCGTCCTCTTCCTCTTCAGCAGCTCCGTCTCG
GGCATCGCCACCGTCGGCATCCGCTTCCTGTGGATCCGCGTCTTCCAGATCCGCCGCGGCCGCACCGCGCCCCAG
GCGCTCCTGACCGCCACCGTCATGATGGCCCTCGTCATCCTGGCCATCAACTACGCCCTCGCCATGGTCGTCGCG
CCCCAGTACTCCATCTACGGCACCCAGACCTTCTGCACCAACGAGCCCGACGGCCCCGGCGCCCAGCCCGTGTGC
GAGCCCGGCTCGGACCGGATCCGTCCCTGCTCCGAGCTGCTCGACCAGAAGCACGCGCGCGACGTCTGCACGCCC
TCCGTCATGTCCACCTTCCTCAACCGCATCAACATCACCTGGCCCTTCTTCGGCGTCCTCGACTTCTGGGCCCAG
TTCGCCTTCCTGGCCGTCTTCCTCGTCGTCTTCGTCACCGCCCTCTTCCGCACCCCGCGCCTGAGCATGTCGGAG
CTGGACGAGGACGCCGAGGCGGACGAGGAGGAGAGTCTGCTGGCGACGACGGGCCGCCGCTTCGGCGCCACCTGG
CAGGACGTCAGGGGCAGGGCCGCCGAGAGCAGAGGCACGGCGAGCACCGGTCAGGCGGGCGCGCGTTGA
Transcript >Hirsu2|7918
ATGGCCGCCGTCATCGCGGCCGACGCCGGCCTCGTCCACACGAGCCTCATCTGGGTCGCCTACGCCGTCGCCGTC
GCCTGCTGTCTGCTGGCGGCCATCATCACCACCTTCACCTGGCAGACGCCGCGCGACCGGTCGGCCGTCGTCAGC
CTCGTCGCCACCGTCTCCCTCACGGCCCTCCTGGCCACGGTCCTGCTGCTGCCGGTCGACATCGCCCTCGTCTCG
GCCACGGCCTCGCCCGCGCTCGGCGCCAAGAAGAGCTGGGCCACGCCCGAGCGCATCGCCGACATCCTCTTGACG
CTCAAGATCGTCTACTACTCGCTCTACAGTCTCGACGCCCTTCTGTGCCTCATCGTCATCCCCTTCGCCTACTTC
TGGTACGAGGAGTACGATGAGATTGAGTTCGAGGAGGAGGGCCGCTCCTGGACGAGCCGCTTCTGGGCCGCCACC
AAGTACACCCTCTTCTTCGCCCTCCTCGTCCTCGTCCTCTTCCTCCTCGGCTTCTTCGTCCCCGCCGCCGGCCGC
TCCTCGCGCGCCCACTGGGACCTCGACTACTTCAAGCGCCTCATCGCCCAGAACCACGGCGAGAAGGCGCTGACC
TTCGCCCTCGGCCTGCTCATGACGCTCGGCACCCTCCTCTACGTCGTCTACACCGGCGCCGGCCTCGCCCTCTTG
CCCGTCTCCTTCATCAAGTCGGCCCCCGCCATCTCGGCGCCCCAGCTGTCCGCCACCACCGCCTCGCAGCTGGAG
CAGAACCGCGAGCGCCAGCGCCAGCTCGAGATGCGCAACGCCGGCCGCGACGACGGCATGCCGCGCAAGGACAGG
CGCGAGCTCGAGGCCCTCGTCAGGGAGGAGCAGACGCTGGTCCGCCGCGCGCGCCTCGCCTCCGAGGCCCAGGGC
GAGGGCCGCAGCCGCGTCTACCAGGCCTGGCTCCGGCTCTGCGCCCTCTTCCGCCCCGTCAAGATGCTGGGCGGC
ATCCTGCTGCTGGCCCTGTCGCTCCTGATCTGGGTCTCCATGCTCATCACCGGCATCGACAAGGCCAAGAACTCG
GTCTGCAAGCAGCACTGCGGCTACATCCTCGGCCACATCCACCTCTTCCAGCCCGTCAACTGGATCTTCGTCCAG
GCGGCCAAGGCCTTCCCCGTCGACTACGTCCTCATGGCCCTCCTCGTCCTCTTCCTCTTCAGCAGCTCCGTCTCG
GGCATCGCCACCGTCGGCATCCGCTTCCTGTGGATCCGCGTCTTCCAGATCCGCCGCGGCCGCACCGCGCCCCAG
GCGCTCCTGACCGCCACCGTCATGATGGCCCTCGTCATCCTGGCCATCAACTACGCCCTCGCCATGGTCGTCGCG
CCCCAGTACTCCATCTACGGCACCCAGACCTTCTGCACCAACGAGCCCGACGGCCCCGGCGCCCAGCCCGTGTGC
GAGCCCGGCTCGGACCGGATCCGTCCCTGCTCCGAGCTGCTCGACCAGAAGCACGCGCGCGACGTCTGCACGCCC
TCCGTCATGTCCACCTTCCTCAACCGCATCAACATCACCTGGCCCTTCTTCGGCGTCCTCGACTTCTGGGCCCAG
TTCGCCTTCCTGGCCGTCTTCCTCGTCGTCTTCGTCACCGCCCTCTTCCGCACCCCGCGCCTGAGCATGTCGGAG
CTGGACGAGGACGCCGAGGCGGACGAGGAGGAGAGTCTGCTGGCGACGACGGGCCGCCGCTTCGGCGCCACCTGG
CAGGACGTCAGGGGCAGGGCCGCCGAGAGCAGAGGCACGGCGAGCACCGGTCAGGCGGGCGCGCGTTGA
Gene >Hirsu2|7918
ATGGCCGCCGTCATCGCGGCCGACGCCGGCCTCGTCCACACGAGCCTCATCTGGGTCGCCTACGCCGTCGCCGTC
GCCTGCTGTCTGCTGGCGGCCATCATCACCACCTTCACCTGGCAGACGCCGCGCGACCGGTCGGCCGTCGTCAGC
CTCGTCGCCACCGTCTCCCTCACGGCCCTCCTGGCCACGGTCCTGCTGCTGCCGGTCGACATCGCCCTCGTCTCG
GCCACGGCCTCGCCCGCGCTCGGCGCCAAGAAGAGCTGGGCCACGCCCGAGCGCATCGCCGACATCCTCTTGACG
CTCAAGATCGTCTACTACTCGCTCTACAGTCTCGACGCCCTTCTGTGCCTCATCGTCATCCCCTTCGCCTACTTC
TGGTACGAGGAGTACGATGAGATTGAGTTCGAGGAGGAGGGCCGCTCCTGGACGAGCCGCTTCTGGGCCGCCACC
AAGTACACCCTCTTCTTCGCCCTCCTCGTCCTCGTCCTCTTCCTCCTCGGCTTCTTCGTCCCCGCCGCCGGCCGC
TCCTCGCGCGCCCACTGGGACCTCGACTACTTCAAGCGCCTCATCGCCCAGAACCACGGCGAGAAGGCGCTGACC
TTCGCCCTCGGCCTGCTCATGACGCTCGGCACCCTCCTCTACGTCGTCTACACCGGCGCCGGCCTCGCCCTCTTG
CCCGTCTCCTTCATCAAGTCGGCCCCCGCCATCTCGGCGCCCCAGCTGTCCGCCACCACCGCCTCGCAGCTGGAG
CAGAACCGCGAGCGCCAGCGCCAGCTCGAGATGCGCAACGCCGGCCGCGACGACGGCATGCCGCGCAAGGACAGG
CGCGAGCTCGAGGCCCTCGTCAGGGAGGAGCAGACGCTGGTCCGCCGCGCGCGCCTCGCCTCCGAGGCCCAGGGC
GAGGGCCGCAGCCGCGTCTACCAGGCCTGGCTCCGGCTCTGCGCCCTCTTCCGCCCCGTCAAGATGCTGGGCGGC
ATCCTGCTGCTGGCCCTGTCGCTCCTGATCTGGGTCTCCATGCTCATCACCGGCATCGACAAGGCCAAGAACTCG
GTCTGCAAGCAGCACTGCGGCTACATCCTCGGCCACATCCACCTCTTCCAGCCCGTCAACTGGATCTTCGTCCAG
GCGGCCAAGGCCTTCCCCGTCGACTACGTCCTCATGGCCCTCCTCGTCCTCTTCCTCTTCAGCAGCTCCGTCTCG
GGCATCGCCACCGTCGGCATCCGCTTCCTGTGGATCCGCGTCTTCCAGATCCGCCGCGGCCGCACCGCGCCCCAG
GCGCTCCTGACCGCCACCGTCATGATGGCCCTCGTCATCCTGGCCATCAACTACGCCCTCGCCATGGTCGTCGCG
CCCCAGTACTCCATCTACGGCACCCAGACCTTCTGCACCAACGAGCCCGACGGCCCCGGCGCCCAGCCCGTGTGC
GAGCCCGGCTCGGACCGGATCCGTCCCTGCTCCGAGCTGCTCGACCAGAAGCACGCGCGCGACGTCTGCACGCCC
TCCGTCATGTCCACCTTCCTCAACCGCATCAACATCACCTGGCCCTTCTTCGGCGTCCTCGACTTCTGGGCCCAG
TTCGCCTTCCTGGCCGTCTTCCTCGTCGTCTTCGTCACCGCCCTCTTCCGCACCCCGCGCCTGAGCATGTCGGAG
CTGGACGAGGACGCCGAGGCGGACGAGGAGGAGAGTCTGCTGGCGACGACGGGCCGCCGCTTCGGCGCCACCTGG
CAGGACGTCAGGGGCAGGGCCGCCGAGAGCAGAGGCACGGCGAGCACCGGTCAGGCGGGCGCGCGTTGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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