© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|7908 |
| Gene name | |
| Location | Contig_489:2836..3938 |
| Strand | - |
| Gene length (bp) | 1102 |
| Transcript length (bp) | 939 |
| Coding sequence length (bp) | 939 |
| Protein length (aa) | 313 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01522 | Polysacc_deac_1 | Polysaccharide deacetylase | 1.7E-17 | 41 | 147 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|B5ZA76|PGDAE_HELPG | Peptidoglycan deacetylase OS=Helicobacter pylori (strain G27) GN=pgdA PE=1 SV=1 | 4 | 292 | 1.0E-123 |
| sp|O25080|PGDAE_HELPY | Peptidoglycan deacetylase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=pgdA PE=1 SV=1 | 4 | 292 | 9.0E-122 |
| sp|O13842|CDA1_SCHPO | Chitin deacetylase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cda1 PE=1 SV=1 | 38 | 292 | 4.0E-08 |
| sp|Q04729|YFUM2_GEOSE | Uncharacterized 30.6 kDa protein in fumA 3'region OS=Geobacillus stearothermophilus PE=3 SV=1 | 44 | 127 | 6.0E-08 |
| sp|O34928|PDAA_BACSU | Peptidoglycan-N-acetylmuramic acid deacetylase PdaA OS=Bacillus subtilis (strain 168) GN=pdaA PE=1 SV=1 | 44 | 129 | 2.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|7908 MGKKRVQITYGVDVDAVAGWLGSYGGQDSPHDISRGIFAATVGTERLLKLFAKYDIKATWFIPGHSLESFPEEMA RVRDAGHELGLHGYSHENPTAMTASQQRDVMDKSWRLLADFCGGRPPRGIVTPWWETSGDWARLLLAYGLEYDHS MSHEDSRPYWLPADESWARIDYARPARSWMRPLGRGRPTGIVEVPANWCLDDLPPLMFVKAAANSHGFVNARDVE DTWRDHFDYLYREHDDFVLPLTLHPDVSGRPHALLMHERLIEHFRRHDGVEFVTMGRVVDDFKSRNPPPEGAPMP AAPGAALGAEGP* |
| Coding | >Hirsu2|7908 ATGGGCAAGAAACGGGTTCAGATCACGTATGGCGTCGATGTCGATGCTGTGGCTGGATGGCTGGGCTCGTATGGC GGGCAGGACTCGCCGCACGACATAAGCCGAGGCATCTTCGCGGCGACGGTCGGGACGGAGCGGCTGCTGAAGCTG TTCGCCAAGTACGACATCAAGGCGACGTGGTTCATCCCCGGGCACAGCCTGGAGTCGTTCCCGGAGGAGATGGCG CGGGTGCGGGACGCGGGCCACGAGCTGGGCCTGCACGGCTACTCGCACGAGAACCCGACGGCGATGACGGCGTCG CAGCAGCGCGACGTGATGGACAAGTCGTGGCGGCTGCTGGCCGACTTCTGCGGCGGGCGGCCGCCGCGCGGCATC GTGACGCCGTGGTGGGAGACGAGCGGCGACTGGGCGCGGCTGCTGCTGGCGTACGGGCTCGAGTACGACCACTCG ATGAGCCACGAGGACAGCCGGCCGTACTGGCTGCCGGCCGACGAGAGCTGGGCGCGCATCGACTACGCCCGGCCG GCGCGCAGCTGGATGCGGCCGCTGGGGCGCGGGCGGCCGACGGGCATCGTCGAGGTGCCGGCCAACTGGTGCCTC GACGACCTGCCGCCGCTCATGTTCGTCAAGGCGGCCGCCAACAGCCACGGCTTCGTCAACGCGCGCGACGTCGAG GACACGTGGCGCGACCACTTCGACTACCTGTACCGCGAGCACGACGACTTCGTCCTGCCGCTGACGCTGCACCCG GACGTCAGCGGCCGCCCGCACGCGCTGCTGATGCACGAGCGCCTCATCGAGCACTTCCGCCGCCACGACGGCGTC GAGTTCGTCACCATGGGCCGCGTCGTCGACGACTTCAAGAGCCGCAACCCGCCGCCCGAGGGGGCCCCGATGCCG GCTGCGCCCGGCGCTGCCCTGGGCGCGGAGGGGCCGTGA |
| Transcript | >Hirsu2|7908 ATGGGCAAGAAACGGGTTCAGATCACGTATGGCGTCGATGTCGATGCTGTGGCTGGATGGCTGGGCTCGTATGGC GGGCAGGACTCGCCGCACGACATAAGCCGAGGCATCTTCGCGGCGACGGTCGGGACGGAGCGGCTGCTGAAGCTG TTCGCCAAGTACGACATCAAGGCGACGTGGTTCATCCCCGGGCACAGCCTGGAGTCGTTCCCGGAGGAGATGGCG CGGGTGCGGGACGCGGGCCACGAGCTGGGCCTGCACGGCTACTCGCACGAGAACCCGACGGCGATGACGGCGTCG CAGCAGCGCGACGTGATGGACAAGTCGTGGCGGCTGCTGGCCGACTTCTGCGGCGGGCGGCCGCCGCGCGGCATC GTGACGCCGTGGTGGGAGACGAGCGGCGACTGGGCGCGGCTGCTGCTGGCGTACGGGCTCGAGTACGACCACTCG ATGAGCCACGAGGACAGCCGGCCGTACTGGCTGCCGGCCGACGAGAGCTGGGCGCGCATCGACTACGCCCGGCCG GCGCGCAGCTGGATGCGGCCGCTGGGGCGCGGGCGGCCGACGGGCATCGTCGAGGTGCCGGCCAACTGGTGCCTC GACGACCTGCCGCCGCTCATGTTCGTCAAGGCGGCCGCCAACAGCCACGGCTTCGTCAACGCGCGCGACGTCGAG GACACGTGGCGCGACCACTTCGACTACCTGTACCGCGAGCACGACGACTTCGTCCTGCCGCTGACGCTGCACCCG GACGTCAGCGGCCGCCCGCACGCGCTGCTGATGCACGAGCGCCTCATCGAGCACTTCCGCCGCCACGACGGCGTC GAGTTCGTCACCATGGGCCGCGTCGTCGACGACTTCAAGAGCCGCAACCCGCCGCCCGAGGGGGCCCCGATGCCG GCTGCGCCCGGCGCTGCCCTGGGCGCGGAGGGGCCGTGA |
| Gene | >Hirsu2|7908 ATGGGCAAGAAACGGGTTCAGATCACGTATGGCGTCGATGTCGATGCTGTGGCTGGATGGCTGGGCTCGTATGGC GGGCAGGACTCGCCGCACGACATAAGCCGAGGTTCTGTCGAGCCCATCCTAGTCCTCCTCTTCCTTCACCTTCTC CTCGTCCCCCCTCCCCCCCTTCCTCCTGCTCCTCCTCCACCTCCTCTCCCGCCTCCGGGCCGGCGTTTGTCCCCG CTCGTCGTCCGTGGTTCGCGTGCTGACGGTGGCCGTGCGGGCAGGCATCTTCGCGGCGACGGTCGGGACGGAGCG GCTGCTGAAGCTGTTCGCCAAGTACGACATCAAGGCGACGTGGTTCATCCCCGGGCACAGCCTGGAGTCGTTCCC GGAGGAGATGGCGCGGGTGCGGGACGCGGGCCACGAGCTGGGCCTGCACGGCTACTCGCACGAGAACCCGACGGC GATGACGGCGTCGCAGCAGCGCGACGTGATGGACAAGTCGTGGCGGCTGCTGGCCGACTTCTGCGGCGGGCGGCC GCCGCGCGGCATCGTGACGCCGTGGTGGGAGACGAGCGGCGACTGGGCGCGGCTGCTGCTGGCGTACGGGCTCGA GTACGACCACTCGATGAGCCACGAGGACAGCCGGCCGTACTGGCTGCCGGCCGACGAGAGCTGGGCGCGCATCGA CTACGCCCGGCCGGCGCGCAGCTGGATGCGGCCGCTGGGGCGCGGGCGGCCGACGGGCATCGTCGAGGTGCCGGC CAACTGGTGCCTCGACGACCTGCCGCCGCTCATGTTCGTCAAGGCGGCCGCCAACAGCCACGGCTTCGTCAACGC GCGCGACGTCGAGGACACGTGGCGCGACCACTTCGACTACCTGTACCGCGAGCACGACGACTTCGTCCTGCCGCT GACGCTGCACCCGGACGTCAGCGGCCGCCCGCACGCGCTGCTGATGCACGAGCGCCTCATCGAGCACTTCCGCCG CCACGACGGCGTCGAGTTCGTCACCATGGGCCGCGTCGTCGACGACTTCAAGAGCCGCAACCCGCCGCCCGAGGG GGCCCCGATGCCGGCTGCGCCCGGCGCTGCCCTGGGCGCGGAGGGGCCGTGA |