Protein ID | Hirsu2|7899 |
Gene name | |
Location | Contig_488:1444..2817 |
Strand | - |
Gene length (bp) | 1373 |
Transcript length (bp) | 1302 |
Coding sequence length (bp) | 1302 |
Protein length (aa) | 434 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF08426 | ICE2 | ICE2 | 1.2E-156 | 7 | 421 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O13909|YDW1_SCHPO | Uncharacterized protein C23C11.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23C11.01 PE=4 SV=1 | 1 | 433 | 3.0E-49 |
sp|P40499|ICE2_YEAST | Protein ICE2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ICE2 PE=1 SV=1 | 7 | 420 | 1.0E-39 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.0796 | 0.2164 | 0.0832 | 0.1355 | 0.2377 | 0.1379 | 0.9013 | 0.4288 | 0.6012 | 0.0514 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 2 | 24 | 22 |
2 | 34 | 53 | 19 |
3 | 66 | 88 | 22 |
4 | 139 | 161 | 22 |
5 | 174 | 196 | 22 |
6 | 206 | 225 | 19 |
7 | 232 | 249 | 17 |
8 | 303 | 325 | 22 |
9 | 359 | 381 | 22 |
10 | 401 | 423 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 3960 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|7899 MWWLFSVLLSSVFLFSIVLSIPVAFDVGGRDSGLAYSLSLFNYYLLYSAVRIGTSDRSRLSSAVSAVLRLSQWIV IPTLMIWALGQFAVDAGSTNWVERTLGGVFRSKSTTWTEWVFGKDGVLETVMLGSWDNALKYSGPVFQLLEGFCT LLVIQAAGQITRWLVNRGRSDTWVIILLAFSGSIIASAVYFLWRVAQFPQISNLDATLIGIAMTTAVFLCAYGIG SGRGSPVESSLLFAYVVLCVYQIFTDYLPSDGTGQADEDQAAAQPDIPPLPPIIMASYSTLLHVLGSLPSAIHSS LALLYAAFQTITPSVIISLAYRLFVFYSATRIIPSVRDLGARALMHEPDFDDSETANKLLGFLSWFSPSILVAVY TSLLLQHFSTNDGPDGWTLRGGDVGGGTWRWINVGLTMVLYGVELYLGTNEQDHWKVD* |
Coding | >Hirsu2|7899 ATGTGGTGGCTATTCAGCGTCCTCCTCAGCTCCGTCTTCCTCTTCAGCATCGTCCTCTCCATCCCCGTCGCCTTC GATGTCGGCGGCCGTGACAGCGGGCTGGCCTACAGCCTCTCGCTCTTCAACTACTATCTCCTCTACTCGGCCGTC CGCATCGGCACCTCGGACAGGTCGCGCCTCAGCTCCGCCGTCTCGGCCGTCCTGCGCCTGTCGCAGTGGATCGTC ATCCCGACGCTGATGATCTGGGCCCTCGGCCAGTTCGCCGTCGACGCCGGCAGCACCAACTGGGTCGAGAGAACG CTGGGCGGCGTCTTCCGCTCCAAGAGCACCACCTGGACCGAGTGGGTCTTCGGCAAGGACGGCGTGCTGGAGACG GTCATGCTGGGCAGCTGGGACAACGCCCTCAAGTACTCGGGCCCCGTCTTCCAGCTCCTCGAGGGCTTCTGCACC CTGCTCGTCATCCAGGCCGCCGGCCAGATCACCCGCTGGCTCGTCAACAGGGGGAGGAGTGACACGTGGGTGATC ATCCTCCTCGCCTTCTCCGGCTCCATCATCGCCAGCGCCGTCTATTTCCTTTGGCGCGTCGCGCAGTTCCCGCAG ATCAGTAACCTCGACGCCACCCTCATCGGCATCGCCATGACCACGGCCGTCTTCCTCTGCGCTTACGGCATCGGC AGCGGCCGCGGCAGTCCCGTCGAGAGCTCGCTGCTCTTCGCCTACGTCGTCCTCTGCGTCTACCAGATCTTCACC GACTACCTGCCGTCGGACGGGACCGGCCAGGCAGACGAGGACCAGGCGGCCGCGCAGCCAGACATCCCGCCCCTG CCGCCCATCATCATGGCCTCGTACTCGACCCTCCTCCACGTGCTCGGCTCGCTCCCCTCGGCCATCCACTCGTCG CTGGCCCTGCTCTACGCCGCCTTCCAGACCATCACGCCGTCCGTCATCATCTCGCTCGCCTATCGCCTCTTCGTC TTCTACTCGGCCACGCGCATCATCCCCTCGGTGCGCGACCTGGGCGCGCGCGCGCTGATGCACGAGCCGGACTTT GACGACTCGGAGACGGCCAACAAGCTCCTCGGCTTCCTCAGCTGGTTCTCGCCCTCGATCCTCGTGGCCGTCTAC ACGAGCCTGCTGCTGCAGCACTTCTCGACCAACGACGGGCCCGACGGCTGGACGCTCCGCGGCGGCGACGTCGGC GGCGGCACCTGGCGCTGGATCAACGTCGGCCTGACCATGGTGCTGTACGGCGTGGAGCTGTACCTGGGCACCAAC GAGCAGGACCACTGGAAGGTGGATTGA |
Transcript | >Hirsu2|7899 ATGTGGTGGCTATTCAGCGTCCTCCTCAGCTCCGTCTTCCTCTTCAGCATCGTCCTCTCCATCCCCGTCGCCTTC GATGTCGGCGGCCGTGACAGCGGGCTGGCCTACAGCCTCTCGCTCTTCAACTACTATCTCCTCTACTCGGCCGTC CGCATCGGCACCTCGGACAGGTCGCGCCTCAGCTCCGCCGTCTCGGCCGTCCTGCGCCTGTCGCAGTGGATCGTC ATCCCGACGCTGATGATCTGGGCCCTCGGCCAGTTCGCCGTCGACGCCGGCAGCACCAACTGGGTCGAGAGAACG CTGGGCGGCGTCTTCCGCTCCAAGAGCACCACCTGGACCGAGTGGGTCTTCGGCAAGGACGGCGTGCTGGAGACG GTCATGCTGGGCAGCTGGGACAACGCCCTCAAGTACTCGGGCCCCGTCTTCCAGCTCCTCGAGGGCTTCTGCACC CTGCTCGTCATCCAGGCCGCCGGCCAGATCACCCGCTGGCTCGTCAACAGGGGGAGGAGTGACACGTGGGTGATC ATCCTCCTCGCCTTCTCCGGCTCCATCATCGCCAGCGCCGTCTATTTCCTTTGGCGCGTCGCGCAGTTCCCGCAG ATCAGTAACCTCGACGCCACCCTCATCGGCATCGCCATGACCACGGCCGTCTTCCTCTGCGCTTACGGCATCGGC AGCGGCCGCGGCAGTCCCGTCGAGAGCTCGCTGCTCTTCGCCTACGTCGTCCTCTGCGTCTACCAGATCTTCACC GACTACCTGCCGTCGGACGGGACCGGCCAGGCAGACGAGGACCAGGCGGCCGCGCAGCCAGACATCCCGCCCCTG CCGCCCATCATCATGGCCTCGTACTCGACCCTCCTCCACGTGCTCGGCTCGCTCCCCTCGGCCATCCACTCGTCG CTGGCCCTGCTCTACGCCGCCTTCCAGACCATCACGCCGTCCGTCATCATCTCGCTCGCCTATCGCCTCTTCGTC TTCTACTCGGCCACGCGCATCATCCCCTCGGTGCGCGACCTGGGCGCGCGCGCGCTGATGCACGAGCCGGACTTT GACGACTCGGAGACGGCCAACAAGCTCCTCGGCTTCCTCAGCTGGTTCTCGCCCTCGATCCTCGTGGCCGTCTAC ACGAGCCTGCTGCTGCAGCACTTCTCGACCAACGACGGGCCCGACGGCTGGACGCTCCGCGGCGGCGACGTCGGC GGCGGCACCTGGCGCTGGATCAACGTCGGCCTGACCATGGTGCTGTACGGCGTGGAGCTGTACCTGGGCACCAAC GAGCAGGACCACTGGAAGGTGGATTGA |
Gene | >Hirsu2|7899 ATGTGGTGGCTATTCAGCGTCCTCCTCAGCTCCGTCTTCCTCTTCAGCATCGTCCTCTCCATCCCCGTCGCCTTC GATGTCGGCGGCCGTGACAGCGGGCTGGCCTACAGCCTCTCGCTCTTCAACTACTATCTCCTCTACTCGGCCGTC CGCATCGGCACCTCGGACAGGTCGCGCCTCAGCTCCGCCGTCTCGGCCGTCCTGCGCCTGTCGCAGTGGATCGTC ATCCCGACGCTGATGATCTGGGCCCTCGGCCAGTTCGCCGTCGACGCCGGCAGCACCAACTGGGTCGAGAGAACG CTGGGCGGCGTCTTCCGCTCCAAGAGCACCACCTGGACCGAGTGGGTCTTCGGCAAGGACGGCGTGCTGGAGACG GTCATGCTGGGCAGCTGGGACAACGCCCTCAAGTACTCGGGCCCCGTCTTCCAGCTCCTCGAGGGCTTCTGCACC CTGCTCGTCATCCAGGCCGCCGGCCAGATCACCCGCTGGCTCGTCAACAGGGGGAGGAGTGACACGTGGGTGGTG AGTCGCGCCTCTGTGCAGCCGAGGCGACTGGGTGATTTCTCGTCGGTTCGGTCGCTCATCTGCCACAGATCATCC TCCTCGCCTTCTCCGGCTCCATCATCGCCAGCGCCGTCTATTTCCTTTGGCGCGTCGCGCAGTTCCCGCAGATCA GTAACCTCGACGCCACCCTCATCGGCATCGCCATGACCACGGCCGTCTTCCTCTGCGCTTACGGCATCGGCAGCG GCCGCGGCAGTCCCGTCGAGAGCTCGCTGCTCTTCGCCTACGTCGTCCTCTGCGTCTACCAGATCTTCACCGACT ACCTGCCGTCGGACGGGACCGGCCAGGCAGACGAGGACCAGGCGGCCGCGCAGCCAGACATCCCGCCCCTGCCGC CCATCATCATGGCCTCGTACTCGACCCTCCTCCACGTGCTCGGCTCGCTCCCCTCGGCCATCCACTCGTCGCTGG CCCTGCTCTACGCCGCCTTCCAGACCATCACGCCGTCCGTCATCATCTCGCTCGCCTATCGCCTCTTCGTCTTCT ACTCGGCCACGCGCATCATCCCCTCGGTGCGCGACCTGGGCGCGCGCGCGCTGATGCACGAGCCGGACTTTGACG ACTCGGAGACGGCCAACAAGCTCCTCGGCTTCCTCAGCTGGTTCTCGCCCTCGATCCTCGTGGCCGTCTACACGA GCCTGCTGCTGCAGCACTTCTCGACCAACGACGGGCCCGACGGCTGGACGCTCCGCGGCGGCGACGTCGGCGGCG GCACCTGGCGCTGGATCAACGTCGGCCTGACCATGGTGCTGTACGGCGTGGAGCTGTACCTGGGCACCAACGAGC AGGACCACTGGAAGGTGGATTGA |