Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|7899
Gene name
LocationContig_488:1444..2817
Strand-
Gene length (bp)1373
Transcript length (bp)1302
Coding sequence length (bp)1302
Protein length (aa) 434

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08426 ICE2 ICE2 3.8E-158 7 421

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O13909|YDW1_SCHPO Uncharacterized protein C23C11.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23C11.01 PE=4 SV=1 1 433 3.0E-49
sp|P40499|ICE2_YEAST Protein ICE2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ICE2 PE=1 SV=1 7 420 1.0E-39

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 21 0.5

Transmembrane Domains

Domain # Start End Length
1 2 24 22
2 34 53 19
3 66 88 22
4 139 161 22
5 174 196 22
6 206 225 19
7 232 249 17
8 303 325 22
9 359 381 22
10 401 423 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|7899
MWWLFSVLLSSVFLFSIVLSIPVAFDVGGRDSGLAYSLSLFNYYLLYSAVRIGTSDRSRLSSAVSAVLRLSQWIV
IPTLMIWALGQFAVDAGSTNWVERTLGGVFRSKSTTWTEWVFGKDGVLETVMLGSWDNALKYSGPVFQLLEGFCT
LLVIQAAGQITRWLVNRGRSDTWVIILLAFSGSIIASAVYFLWRVAQFPQISNLDATLIGIAMTTAVFLCAYGIG
SGRGSPVESSLLFAYVVLCVYQIFTDYLPSDGTGQADEDQAAAQPDIPPLPPIIMASYSTLLHVLGSLPSAIHSS
LALLYAAFQTITPSVIISLAYRLFVFYSATRIIPSVRDLGARALMHEPDFDDSETANKLLGFLSWFSPSILVAVY
TSLLLQHFSTNDGPDGWTLRGGDVGGGTWRWINVGLTMVLYGVELYLGTNEQDHWKVD*
Coding >Hirsu2|7899
ATGTGGTGGCTATTCAGCGTCCTCCTCAGCTCCGTCTTCCTCTTCAGCATCGTCCTCTCCATCCCCGTCGCCTTC
GATGTCGGCGGCCGTGACAGCGGGCTGGCCTACAGCCTCTCGCTCTTCAACTACTATCTCCTCTACTCGGCCGTC
CGCATCGGCACCTCGGACAGGTCGCGCCTCAGCTCCGCCGTCTCGGCCGTCCTGCGCCTGTCGCAGTGGATCGTC
ATCCCGACGCTGATGATCTGGGCCCTCGGCCAGTTCGCCGTCGACGCCGGCAGCACCAACTGGGTCGAGAGAACG
CTGGGCGGCGTCTTCCGCTCCAAGAGCACCACCTGGACCGAGTGGGTCTTCGGCAAGGACGGCGTGCTGGAGACG
GTCATGCTGGGCAGCTGGGACAACGCCCTCAAGTACTCGGGCCCCGTCTTCCAGCTCCTCGAGGGCTTCTGCACC
CTGCTCGTCATCCAGGCCGCCGGCCAGATCACCCGCTGGCTCGTCAACAGGGGGAGGAGTGACACGTGGGTGATC
ATCCTCCTCGCCTTCTCCGGCTCCATCATCGCCAGCGCCGTCTATTTCCTTTGGCGCGTCGCGCAGTTCCCGCAG
ATCAGTAACCTCGACGCCACCCTCATCGGCATCGCCATGACCACGGCCGTCTTCCTCTGCGCTTACGGCATCGGC
AGCGGCCGCGGCAGTCCCGTCGAGAGCTCGCTGCTCTTCGCCTACGTCGTCCTCTGCGTCTACCAGATCTTCACC
GACTACCTGCCGTCGGACGGGACCGGCCAGGCAGACGAGGACCAGGCGGCCGCGCAGCCAGACATCCCGCCCCTG
CCGCCCATCATCATGGCCTCGTACTCGACCCTCCTCCACGTGCTCGGCTCGCTCCCCTCGGCCATCCACTCGTCG
CTGGCCCTGCTCTACGCCGCCTTCCAGACCATCACGCCGTCCGTCATCATCTCGCTCGCCTATCGCCTCTTCGTC
TTCTACTCGGCCACGCGCATCATCCCCTCGGTGCGCGACCTGGGCGCGCGCGCGCTGATGCACGAGCCGGACTTT
GACGACTCGGAGACGGCCAACAAGCTCCTCGGCTTCCTCAGCTGGTTCTCGCCCTCGATCCTCGTGGCCGTCTAC
ACGAGCCTGCTGCTGCAGCACTTCTCGACCAACGACGGGCCCGACGGCTGGACGCTCCGCGGCGGCGACGTCGGC
GGCGGCACCTGGCGCTGGATCAACGTCGGCCTGACCATGGTGCTGTACGGCGTGGAGCTGTACCTGGGCACCAAC
GAGCAGGACCACTGGAAGGTGGATTGA
Transcript >Hirsu2|7899
ATGTGGTGGCTATTCAGCGTCCTCCTCAGCTCCGTCTTCCTCTTCAGCATCGTCCTCTCCATCCCCGTCGCCTTC
GATGTCGGCGGCCGTGACAGCGGGCTGGCCTACAGCCTCTCGCTCTTCAACTACTATCTCCTCTACTCGGCCGTC
CGCATCGGCACCTCGGACAGGTCGCGCCTCAGCTCCGCCGTCTCGGCCGTCCTGCGCCTGTCGCAGTGGATCGTC
ATCCCGACGCTGATGATCTGGGCCCTCGGCCAGTTCGCCGTCGACGCCGGCAGCACCAACTGGGTCGAGAGAACG
CTGGGCGGCGTCTTCCGCTCCAAGAGCACCACCTGGACCGAGTGGGTCTTCGGCAAGGACGGCGTGCTGGAGACG
GTCATGCTGGGCAGCTGGGACAACGCCCTCAAGTACTCGGGCCCCGTCTTCCAGCTCCTCGAGGGCTTCTGCACC
CTGCTCGTCATCCAGGCCGCCGGCCAGATCACCCGCTGGCTCGTCAACAGGGGGAGGAGTGACACGTGGGTGATC
ATCCTCCTCGCCTTCTCCGGCTCCATCATCGCCAGCGCCGTCTATTTCCTTTGGCGCGTCGCGCAGTTCCCGCAG
ATCAGTAACCTCGACGCCACCCTCATCGGCATCGCCATGACCACGGCCGTCTTCCTCTGCGCTTACGGCATCGGC
AGCGGCCGCGGCAGTCCCGTCGAGAGCTCGCTGCTCTTCGCCTACGTCGTCCTCTGCGTCTACCAGATCTTCACC
GACTACCTGCCGTCGGACGGGACCGGCCAGGCAGACGAGGACCAGGCGGCCGCGCAGCCAGACATCCCGCCCCTG
CCGCCCATCATCATGGCCTCGTACTCGACCCTCCTCCACGTGCTCGGCTCGCTCCCCTCGGCCATCCACTCGTCG
CTGGCCCTGCTCTACGCCGCCTTCCAGACCATCACGCCGTCCGTCATCATCTCGCTCGCCTATCGCCTCTTCGTC
TTCTACTCGGCCACGCGCATCATCCCCTCGGTGCGCGACCTGGGCGCGCGCGCGCTGATGCACGAGCCGGACTTT
GACGACTCGGAGACGGCCAACAAGCTCCTCGGCTTCCTCAGCTGGTTCTCGCCCTCGATCCTCGTGGCCGTCTAC
ACGAGCCTGCTGCTGCAGCACTTCTCGACCAACGACGGGCCCGACGGCTGGACGCTCCGCGGCGGCGACGTCGGC
GGCGGCACCTGGCGCTGGATCAACGTCGGCCTGACCATGGTGCTGTACGGCGTGGAGCTGTACCTGGGCACCAAC
GAGCAGGACCACTGGAAGGTGGATTGA
Gene >Hirsu2|7899
ATGTGGTGGCTATTCAGCGTCCTCCTCAGCTCCGTCTTCCTCTTCAGCATCGTCCTCTCCATCCCCGTCGCCTTC
GATGTCGGCGGCCGTGACAGCGGGCTGGCCTACAGCCTCTCGCTCTTCAACTACTATCTCCTCTACTCGGCCGTC
CGCATCGGCACCTCGGACAGGTCGCGCCTCAGCTCCGCCGTCTCGGCCGTCCTGCGCCTGTCGCAGTGGATCGTC
ATCCCGACGCTGATGATCTGGGCCCTCGGCCAGTTCGCCGTCGACGCCGGCAGCACCAACTGGGTCGAGAGAACG
CTGGGCGGCGTCTTCCGCTCCAAGAGCACCACCTGGACCGAGTGGGTCTTCGGCAAGGACGGCGTGCTGGAGACG
GTCATGCTGGGCAGCTGGGACAACGCCCTCAAGTACTCGGGCCCCGTCTTCCAGCTCCTCGAGGGCTTCTGCACC
CTGCTCGTCATCCAGGCCGCCGGCCAGATCACCCGCTGGCTCGTCAACAGGGGGAGGAGTGACACGTGGGTGGTG
AGTCGCGCCTCTGTGCAGCCGAGGCGACTGGGTGATTTCTCGTCGGTTCGGTCGCTCATCTGCCACAGATCATCC
TCCTCGCCTTCTCCGGCTCCATCATCGCCAGCGCCGTCTATTTCCTTTGGCGCGTCGCGCAGTTCCCGCAGATCA
GTAACCTCGACGCCACCCTCATCGGCATCGCCATGACCACGGCCGTCTTCCTCTGCGCTTACGGCATCGGCAGCG
GCCGCGGCAGTCCCGTCGAGAGCTCGCTGCTCTTCGCCTACGTCGTCCTCTGCGTCTACCAGATCTTCACCGACT
ACCTGCCGTCGGACGGGACCGGCCAGGCAGACGAGGACCAGGCGGCCGCGCAGCCAGACATCCCGCCCCTGCCGC
CCATCATCATGGCCTCGTACTCGACCCTCCTCCACGTGCTCGGCTCGCTCCCCTCGGCCATCCACTCGTCGCTGG
CCCTGCTCTACGCCGCCTTCCAGACCATCACGCCGTCCGTCATCATCTCGCTCGCCTATCGCCTCTTCGTCTTCT
ACTCGGCCACGCGCATCATCCCCTCGGTGCGCGACCTGGGCGCGCGCGCGCTGATGCACGAGCCGGACTTTGACG
ACTCGGAGACGGCCAACAAGCTCCTCGGCTTCCTCAGCTGGTTCTCGCCCTCGATCCTCGTGGCCGTCTACACGA
GCCTGCTGCTGCAGCACTTCTCGACCAACGACGGGCCCGACGGCTGGACGCTCCGCGGCGGCGACGTCGGCGGCG
GCACCTGGCGCTGGATCAACGTCGGCCTGACCATGGTGCTGTACGGCGTGGAGCTGTACCTGGGCACCAACGAGC
AGGACCACTGGAAGGTGGATTGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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