© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|7896 |
| Gene name | |
| Location | Contig_487:10205..12094 |
| Strand | - |
| Gene length (bp) | 1889 |
| Transcript length (bp) | 1800 |
| Coding sequence length (bp) | 1800 |
| Protein length (aa) | 600 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01565 | FAD_binding_4 | FAD binding domain | 5.0E-24 | 126 | 274 |
| PF08031 | BBE | Berberine and berberine like | 9.3E-07 | 540 | 580 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|D4AS41|A7056_ARTBC | Uncharacterized FAD-linked oxidoreductase ARB_02478 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_07056 PE=1 SV=2 | 1 | 586 | 4.0E-57 |
| sp|D4B1Z7|A2478_ARTBC | Uncharacterized FAD-linked oxidoreductase ARB_02478 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_02478 PE=1 SV=1 | 31 | 586 | 6.0E-57 |
| sp|P08159|HDNO_ARTOX | 6-hydroxy-D-nicotine oxidase OS=Arthrobacter oxydans PE=1 SV=2 | 123 | 335 | 6.0E-15 |
| sp|P43485|MCRA_STRLA | Mitomycin radical oxidase OS=Streptomyces lavendulae GN=mcrA PE=1 SV=2 | 125 | 304 | 3.0E-07 |
| sp|D4B1P2|A2372_ARTBC | Uncharacterized FAD-linked oxidoreductase ARB_02372 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_02372 PE=1 SV=1 | 249 | 310 | 2.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:0036094 | small molecule binding | No |
| GO:0043168 | anion binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1985 | 0.0636 | 0.9357 | 0.0994 | 0.1373 | 0.0432 | 0.2142 | 0.3191 | 0.0819 | 0.0308 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 21 | 0.999575 |
| CAZyme category | E-value | Start | End |
|---|---|---|---|
| AA7 | 1.1E-37 | 120 | 325 |
| Orthofinder run ID | 4 |
| Orthogroup | 5641 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|7896 MRHQLSWTLASALLAAAAAQANGQQASPKCRCVPGESCWPSEDKWLSFGAKLKGKLVKSEPVAISCYEGPLKDLA KCNEVWNQWSADSFQTKQPLGRYYPYTQSCPPVDYAQGEAPKTCSLGQLPVYVVEAVDRSDIAEALRFTREHNIR VTVTNTGHDLNGRSDGFGSLTIWLQKFRKGISFQPRLQSATGCAASNWSGSALRLDGAYRWRDVVKVAKEKKVMV VSGGSGSPGASGGWMLGGGHGPASREYGLGADQLLEAEVMLANGSVVTANHCQHPDLFRSLRGGGPGYGVVLGVT IKAYLMPDTWSMTVHQLDLWPETQTDSNSELLDAVAHLAQSFPQLNDAGFSGYGVWFRNLRGEFMGGRRSGYNHK LWIVGKNKTEAWSLFEPVRASLDTLKGAVVLNETLREYRNFWTFFDTELGHDDVSGLSLYTTSRFLDKPAVADLR KLREAVDVVSGRPEEYTMNILALGSGGKVFEDAADTSSGLHPAWRTAPMFLITGRRAAHSATEAERRAVMDDITR VKGAATKSLAPDTGAYMNEGDRNDPDWKQAFYGSNYGHHLATKHAYDPDKVFYCPTCVGSDEFVSREDGALCLA* |
| Coding | >Hirsu2|7896 ATGCGCCACCAGCTCTCCTGGACGCTGGCTTCGGCCTTGCTGGCGGCGGCCGCTGCTCAAGCAAACGGCCAGCAG GCCTCGCCCAAGTGCAGATGCGTCCCCGGTGAGAGTTGTTGGCCATCCGAGGACAAGTGGCTCAGCTTCGGCGCC AAACTCAAGGGCAAGCTCGTCAAGTCGGAGCCCGTGGCCATCTCGTGCTATGAAGGCCCGCTCAAGGATCTCGCA AAGTGCAACGAGGTCTGGAACCAGTGGTCGGCGGACAGCTTCCAGACCAAGCAACCGCTCGGGAGGTATTACCCT TATACCCAGTCCTGTCCACCCGTCGACTACGCCCAAGGCGAGGCGCCCAAAACGTGCTCGCTCGGGCAGCTGCCC GTCTACGTCGTCGAGGCCGTCGATCGGTCGGACATCGCCGAGGCCCTCCGGTTCACGCGGGAGCACAACATCCGC GTCACCGTCACCAACACGGGCCACGACCTCAACGGCCGCTCCGACGGCTTCGGGAGCCTGACCATCTGGCTGCAG AAGTTCCGCAAGGGCATCAGCTTCCAGCCCCGGCTGCAGTCCGCCACCGGATGCGCCGCCTCCAACTGGAGCGGC AGCGCCCTGCGTCTCGACGGCGCCTATCGCTGGCGGGACGTCGTCAAGGTGGCCAAGGAGAAGAAGGTGATGGTC GTCAGCGGCGGCTCGGGCTCGCCCGGGGCCAGCGGCGGCTGGATGCTGGGCGGCGGCCACGGGCCGGCCTCGCGC GAGTACGGGCTCGGCGCCGACCAGCTTCTCGAGGCCGAGGTGATGCTCGCCAACGGCTCCGTCGTCACCGCCAAC CACTGCCAGCACCCGGACCTGTTCCGCTCCCTGCGCGGCGGCGGCCCGGGCTACGGCGTCGTGCTCGGCGTCACC ATCAAGGCCTATCTGATGCCCGACACGTGGAGCATGACGGTCCACCAGCTGGACCTCTGGCCCGAGACGCAGACG GACAGCAACTCGGAGCTCCTCGACGCCGTGGCCCACCTGGCTCAGTCGTTCCCGCAGCTCAACGACGCCGGCTTC TCCGGGTACGGCGTCTGGTTCCGGAACCTGCGGGGCGAGTTTATGGGCGGCCGCCGCTCCGGCTACAACCACAAG CTCTGGATCGTGGGCAAGAACAAGACCGAGGCCTGGAGCCTGTTCGAGCCGGTGCGGGCCAGTCTCGACACCCTG AAAGGTGCCGTCGTCCTCAACGAGACGCTGCGCGAGTATCGCAACTTCTGGACCTTCTTCGACACGGAGCTGGGC CACGACGACGTCTCCGGCTTGTCCCTCTACACCACCTCGCGCTTCCTGGACAAGCCGGCCGTCGCCGACTTACGC AAGCTCCGCGAGGCCGTCGACGTCGTGAGCGGCCGGCCCGAGGAGTACACCATGAACATCCTGGCGCTCGGCTCC GGCGGCAAGGTGTTCGAGGACGCGGCCGACACGTCGTCGGGCCTCCATCCGGCTTGGCGCACCGCCCCGATGTTC CTCATCACCGGCCGCCGGGCCGCCCACTCGGCCACCGAGGCCGAGCGCCGGGCCGTCATGGACGACATCACTCGC GTCAAGGGCGCCGCCACCAAGAGCCTCGCCCCCGACACGGGCGCCTACATGAACGAGGGCGACCGCAACGACCCG GACTGGAAGCAGGCCTTCTACGGGTCAAACTACGGCCACCACCTGGCGACCAAGCACGCCTACGACCCGGACAAG GTCTTCTACTGTCCGACCTGCGTCGGATCCGACGAGTTTGTCAGCCGCGAGGACGGAGCCCTGTGTCTGGCCTAG |
| Transcript | >Hirsu2|7896 ATGCGCCACCAGCTCTCCTGGACGCTGGCTTCGGCCTTGCTGGCGGCGGCCGCTGCTCAAGCAAACGGCCAGCAG GCCTCGCCCAAGTGCAGATGCGTCCCCGGTGAGAGTTGTTGGCCATCCGAGGACAAGTGGCTCAGCTTCGGCGCC AAACTCAAGGGCAAGCTCGTCAAGTCGGAGCCCGTGGCCATCTCGTGCTATGAAGGCCCGCTCAAGGATCTCGCA AAGTGCAACGAGGTCTGGAACCAGTGGTCGGCGGACAGCTTCCAGACCAAGCAACCGCTCGGGAGGTATTACCCT TATACCCAGTCCTGTCCACCCGTCGACTACGCCCAAGGCGAGGCGCCCAAAACGTGCTCGCTCGGGCAGCTGCCC GTCTACGTCGTCGAGGCCGTCGATCGGTCGGACATCGCCGAGGCCCTCCGGTTCACGCGGGAGCACAACATCCGC GTCACCGTCACCAACACGGGCCACGACCTCAACGGCCGCTCCGACGGCTTCGGGAGCCTGACCATCTGGCTGCAG AAGTTCCGCAAGGGCATCAGCTTCCAGCCCCGGCTGCAGTCCGCCACCGGATGCGCCGCCTCCAACTGGAGCGGC AGCGCCCTGCGTCTCGACGGCGCCTATCGCTGGCGGGACGTCGTCAAGGTGGCCAAGGAGAAGAAGGTGATGGTC GTCAGCGGCGGCTCGGGCTCGCCCGGGGCCAGCGGCGGCTGGATGCTGGGCGGCGGCCACGGGCCGGCCTCGCGC GAGTACGGGCTCGGCGCCGACCAGCTTCTCGAGGCCGAGGTGATGCTCGCCAACGGCTCCGTCGTCACCGCCAAC CACTGCCAGCACCCGGACCTGTTCCGCTCCCTGCGCGGCGGCGGCCCGGGCTACGGCGTCGTGCTCGGCGTCACC ATCAAGGCCTATCTGATGCCCGACACGTGGAGCATGACGGTCCACCAGCTGGACCTCTGGCCCGAGACGCAGACG GACAGCAACTCGGAGCTCCTCGACGCCGTGGCCCACCTGGCTCAGTCGTTCCCGCAGCTCAACGACGCCGGCTTC TCCGGGTACGGCGTCTGGTTCCGGAACCTGCGGGGCGAGTTTATGGGCGGCCGCCGCTCCGGCTACAACCACAAG CTCTGGATCGTGGGCAAGAACAAGACCGAGGCCTGGAGCCTGTTCGAGCCGGTGCGGGCCAGTCTCGACACCCTG AAAGGTGCCGTCGTCCTCAACGAGACGCTGCGCGAGTATCGCAACTTCTGGACCTTCTTCGACACGGAGCTGGGC CACGACGACGTCTCCGGCTTGTCCCTCTACACCACCTCGCGCTTCCTGGACAAGCCGGCCGTCGCCGACTTACGC AAGCTCCGCGAGGCCGTCGACGTCGTGAGCGGCCGGCCCGAGGAGTACACCATGAACATCCTGGCGCTCGGCTCC GGCGGCAAGGTGTTCGAGGACGCGGCCGACACGTCGTCGGGCCTCCATCCGGCTTGGCGCACCGCCCCGATGTTC CTCATCACCGGCCGCCGGGCCGCCCACTCGGCCACCGAGGCCGAGCGCCGGGCCGTCATGGACGACATCACTCGC GTCAAGGGCGCCGCCACCAAGAGCCTCGCCCCCGACACGGGCGCCTACATGAACGAGGGCGACCGCAACGACCCG GACTGGAAGCAGGCCTTCTACGGGTCAAACTACGGCCACCACCTGGCGACCAAGCACGCCTACGACCCGGACAAG GTCTTCTACTGTCCGACCTGCGTCGGATCCGACGAGTTTGTCAGCCGCGAGGACGGAGCCCTGTGTCTGGCCTAG |
| Gene | >Hirsu2|7896 ATGCGCCACCAGCTCTCCTGGACGCTGGCTTCGGCCTTGCTGGCGGCGGCCGCTGCTCAAGCAAACGGCCAGCAG GCCTCGCCCAAGTGCAGATGCGTGAGTCGAGCCTCGGTGCCATGGCGGCAAGAAGCACACAGGCTTGCGCAGCGG CTGATTCGTACGCGCCTGGTGCATCATGCCTTCAGGTCCCCGGTGAGAGTTGTTGGCCATCCGAGGACAAGTGGC TCAGCTTCGGCGCCAAACTCAAGGGCAAGCTCGTCAAGTCGGAGCCCGTGGCCATCTCGTGCTATGAAGGCCCGC TCAAGGATCTCGCAAAGTGCAACGAGGTCTGGAACCAGTGGTCGGCGGACAGCTTCCAGACCAAGCAACCGCTCG GGAGGTATTACCCTTATACCCAGTCCTGTCCACCCGTCGACTACGCCCAAGGCGAGGCGCCCAAAACGTGCTCGC TCGGGCAGCTGCCCGTCTACGTCGTCGAGGCCGTCGATCGGTCGGACATCGCCGAGGCCCTCCGGTTCACGCGGG AGCACAACATCCGCGTCACCGTCACCAACACGGGCCACGACCTCAACGGCCGCTCCGACGGCTTCGGGAGCCTGA CCATCTGGCTGCAGAAGTTCCGCAAGGGCATCAGCTTCCAGCCCCGGCTGCAGTCCGCCACCGGATGCGCCGCCT CCAACTGGAGCGGCAGCGCCCTGCGTCTCGACGGCGCCTATCGCTGGCGGGACGTCGTCAAGGTGGCCAAGGAGA AGAAGGTGATGGTCGTCAGCGGCGGCTCGGGCTCGCCCGGGGCCAGCGGCGGCTGGATGCTGGGCGGCGGCCACG GGCCGGCCTCGCGCGAGTACGGGCTCGGCGCCGACCAGCTTCTCGAGGCCGAGGTGATGCTCGCCAACGGCTCCG TCGTCACCGCCAACCACTGCCAGCACCCGGACCTGTTCCGCTCCCTGCGCGGCGGCGGCCCGGGCTACGGCGTCG TGCTCGGCGTCACCATCAAGGCCTATCTGATGCCCGACACGTGGAGCATGACGGTCCACCAGCTGGACCTCTGGC CCGAGACGCAGACGGACAGCAACTCGGAGCTCCTCGACGCCGTGGCCCACCTGGCTCAGTCGTTCCCGCAGCTCA ACGACGCCGGCTTCTCCGGGTACGGCGTCTGGTTCCGGAACCTGCGGGGCGAGTTTATGGGCGGCCGCCGCTCCG GCTACAACCACAAGCTCTGGATCGTGGGCAAGAACAAGACCGAGGCCTGGAGCCTGTTCGAGCCGGTGCGGGCCA GTCTCGACACCCTGAAAGGTGCCGTCGTCCTCAACGAGACGCTGCGCGAGTATCGCAACTTCTGGACCTTCTTCG ACACGGAGCTGGGCCACGACGACGTCTCCGGCTTGTCCCTCTACACCACCTCGCGCTTCCTGGACAAGCCGGCCG TCGCCGACTTACGCAAGCTCCGCGAGGCCGTCGACGTCGTGAGCGGCCGGCCCGAGGAGTACACCATGAACATCC TGGCGCTCGGCTCCGGCGGCAAGGTGTTCGAGGACGCGGCCGACACGTCGTCGGGCCTCCATCCGGCTTGGCGCA CCGCCCCGATGTTCCTCATCACCGGCCGCCGGGCCGCCCACTCGGCCACCGAGGCCGAGCGCCGGGCCGTCATGG ACGACATCACTCGCGTCAAGGGCGCCGCCACCAAGAGCCTCGCCCCCGACACGGGCGCCTACATGAACGAGGGCG ACCGCAACGACCCGGACTGGAAGCAGGCCTTCTACGGGTCAAACTACGGCCACCACCTGGCGACCAAGCACGCCT ACGACCCGGACAAGGTCTTCTACTGTCCGACCTGCGTCGGATCCGACGAGTTTGTCAGCCGCGAGGACGGAGCCC TGTGTCTGGCCTAG |