© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|7871 |
| Gene name | |
| Location | Contig_483:6194..7652 |
| Strand | - |
| Gene length (bp) | 1458 |
| Transcript length (bp) | 1398 |
| Coding sequence length (bp) | 1398 |
| Protein length (aa) | 466 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01073 | 3Beta_HSD | 3-beta hydroxysteroid dehydrogenase/isomerase family | 1.2E-10 | 73 | 203 |
| PF01073 | 3Beta_HSD | 3-beta hydroxysteroid dehydrogenase/isomerase family | 1.5E-10 | 241 | 350 |
| PF07993 | NAD_binding_4 | Male sterility protein | 1.0E-08 | 150 | 275 |
| PF01370 | Epimerase | NAD dependent epimerase/dehydratase family | 3.5E-06 | 73 | 291 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P14893|3BHS_BOVIN | 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase OS=Bos taurus GN=HSD3B PE=1 SV=2 | 73 | 453 | 3.0E-12 |
| sp|A8DZE7|D42E1_DANRE | Short-chain dehydrogenase/reductase family 42E member 1 OS=Danio rerio GN=sdr42e1 PE=2 SV=1 | 67 | 465 | 5.0E-12 |
| sp|Q9EQC1|3BHS7_MOUSE | 3 beta-hydroxysteroid dehydrogenase type 7 OS=Mus musculus GN=Hsd3b7 PE=1 SV=1 | 72 | 459 | 1.0E-11 |
| sp|Q9D665|D42E1_MOUSE | Short-chain dehydrogenase/reductase family 42E member 1 OS=Mus musculus GN=Sdr42e1 PE=1 SV=1 | 73 | 389 | 5.0E-11 |
| sp|Q8WUS8|D42E1_HUMAN | Short-chain dehydrogenase/reductase family 42E member 1 OS=Homo sapiens GN=SDR42E1 PE=2 SV=2 | 64 | 389 | 1.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P14893|3BHS_BOVIN | 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase OS=Bos taurus GN=HSD3B PE=1 SV=2 | 73 | 453 | 3.0E-12 |
| sp|A8DZE7|D42E1_DANRE | Short-chain dehydrogenase/reductase family 42E member 1 OS=Danio rerio GN=sdr42e1 PE=2 SV=1 | 67 | 465 | 5.0E-12 |
| sp|Q9EQC1|3BHS7_MOUSE | 3 beta-hydroxysteroid dehydrogenase type 7 OS=Mus musculus GN=Hsd3b7 PE=1 SV=1 | 72 | 459 | 1.0E-11 |
| sp|Q9D665|D42E1_MOUSE | Short-chain dehydrogenase/reductase family 42E member 1 OS=Mus musculus GN=Sdr42e1 PE=1 SV=1 | 73 | 389 | 5.0E-11 |
| sp|Q8WUS8|D42E1_HUMAN | Short-chain dehydrogenase/reductase family 42E member 1 OS=Homo sapiens GN=SDR42E1 PE=2 SV=2 | 64 | 389 | 1.0E-10 |
| sp|Q0IH73|D42E1_XENLA | Short-chain dehydrogenase/reductase family 42E member 1 OS=Xenopus laevis GN=sdr42e1 PE=2 SV=1 | 67 | 341 | 2.0E-10 |
| sp|Q32L94|D42E1_BOVIN | Short-chain dehydrogenase/reductase family 42E member 1 OS=Bos taurus GN=SDR42E1 PE=2 SV=2 | 73 | 389 | 2.0E-10 |
| sp|Q4R7R1|D42E1_MACFA | Short-chain dehydrogenase/reductase family 42E member 1 OS=Macaca fascicularis GN=SDR42E1 PE=2 SV=1 | 64 | 389 | 4.0E-10 |
| sp|P9WQP7|3BHS_MYCTU | 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=Rv1106c PE=1 SV=1 | 71 | 290 | 7.0E-08 |
| sp|P9WQP6|3BHS_MYCTO | 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=MT1137 PE=3 SV=1 | 71 | 290 | 7.0E-08 |
| sp|O35048|3BHS7_RAT | 3 beta-hydroxysteroid dehydrogenase type 7 OS=Rattus norvegicus GN=Hsd3b7 PE=2 SV=1 | 72 | 459 | 4.0E-07 |
| sp|Q9H2F3|3BHS7_HUMAN | 3 beta-hydroxysteroid dehydrogenase type 7 OS=Homo sapiens GN=HSD3B7 PE=1 SV=2 | 72 | 439 | 1.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003854 | 3-beta-hydroxy-delta5-steroid dehydrogenase activity | Yes |
| GO:0006694 | steroid biosynthetic process | Yes |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Yes |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0016229 | steroid dehydrogenase activity | No |
| GO:0033764 | steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | No |
| GO:0008202 | steroid metabolic process | No |
| GO:0008610 | lipid biosynthetic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide | 0.1447 | 0.1737 | 0.4217 | 0.0766 | 0.6142 | 0.097 | 0.7704 | 0.2376 | 0.2332 | 0.1948 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 22 | 17 |
| 2 | 72 | 94 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 6753 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|7871 MSATTVALLLLAAGLVLYGVRVNHVMLQTPPEAQAYLEPPLTADRVRQVYRRVKEQGIDWHAGLPPRRDRRYVIV GGSGLVGGQIALSLLAVGVPPQAIRLLDIRPPTRSEFSSGAAAQVAFVKTDVTSEAEVESGMGASWAASVSGLPL TVFHTAAVIRPQERDPVLYHRCSRVNVAGTAHALSAARKAGAGLFILTSSSNAGSRGVQWLFPPWRRQPRHFAQF IGDDDFSAGRPGRAAHEFPSNYAASKAEAERLVCGSDAAEMRTAAIRPGNGVYGHRDDHIIAQMLGRPRMPTFAA PWAQSWAHVGNVALAHLLLEAALLGPKADKVAGRPFMISDGGAPLRFRDVYTVLGATASTGFSVSHPPPVAMLLL AYGVEAYCRLLARLPARLQGLVPEPGEPLCMLQPGTIASSVTSITDTSTARRRPDEGGLGYRPLCTTLEGLCAQV RDWNEWVEAGGREER* |
| Coding | >Hirsu2|7871 ATGAGCGCAACGACGGTCGCCCTGCTGCTCCTCGCGGCGGGCCTGGTGCTGTACGGCGTGCGGGTCAACCATGTC ATGCTTCAGACTCCTCCCGAGGCTCAGGCCTACCTCGAGCCGCCCTTGACAGCGGATCGCGTTCGGCAGGTTTAC CGACGGGTCAAGGAGCAGGGCATTGACTGGCATGCCGGCCTGCCGCCGCGGAGAGACAGGCGCTACGTCATCGTG GGAGGCTCCGGGCTCGTGGGCGGGCAGATAGCTCTGAGCCTGCTGGCGGTGGGGGTGCCCCCGCAGGCCATCCGG CTGCTCGACATTCGGCCGCCGACGCGGTCCGAGTTCTCGTCGGGCGCGGCGGCGCAGGTGGCCTTCGTCAAGACG GACGTCACGTCCGAGGCCGAGGTCGAGAGCGGCATGGGGGCGTCGTGGGCAGCATCCGTCTCGGGCCTGCCGCTG ACCGTCTTCCACACGGCGGCGGTAATCCGGCCGCAGGAGCGGGACCCGGTCTTGTACCACCGGTGCTCGCGCGTC AACGTCGCCGGCACGGCGCACGCGCTGTCGGCGGCGCGCAAGGCGGGCGCGGGCCTCTTCATCCTCACGTCGAGC TCCAACGCGGGCTCGAGGGGCGTGCAGTGGCTGTTCCCGCCGTGGAGGCGGCAGCCGCGGCACTTTGCGCAGTTC ATCGGTGACGACGACTTCTCGGCCGGGCGACCGGGGCGGGCGGCGCACGAGTTCCCCAGCAACTACGCCGCGTCC AAGGCGGAGGCGGAGCGGCTGGTGTGCGGGTCGGACGCGGCGGAGATGCGGACGGCGGCGATCCGGCCGGGCAAC GGCGTCTACGGCCACCGCGACGACCACATCATCGCGCAGATGCTGGGGCGGCCGCGGATGCCGACGTTCGCGGCG CCGTGGGCGCAGAGCTGGGCGCACGTCGGCAACGTGGCGCTGGCGCACCTGCTGCTCGAGGCGGCGCTGCTGGGC CCGAAGGCGGACAAGGTGGCCGGGCGGCCGTTCATGATCTCGGACGGGGGCGCGCCGCTGCGCTTCCGCGACGTG TACACGGTGCTGGGCGCGACGGCTTCGACGGGCTTCAGCGTCAGCCACCCGCCGCCGGTGGCGATGCTGCTGCTG GCGTACGGCGTCGAGGCCTACTGCCGGCTGCTGGCGCGGCTGCCGGCGCGGCTGCAGGGCCTCGTGCCCGAGCCG GGCGAGCCGCTGTGCATGCTGCAGCCGGGGACGATTGCGTCGTCGGTCACGTCCATCACCGACACGTCGACGGCC CGGAGGCGGCCGGACGAGGGCGGGCTGGGCTACCGGCCGCTGTGCACGACGCTCGAGGGGCTCTGCGCCCAGGTC CGCGACTGGAACGAATGGGTCGAGGCGGGCGGGCGAGAGGAGAGGTGA |
| Transcript | >Hirsu2|7871 ATGAGCGCAACGACGGTCGCCCTGCTGCTCCTCGCGGCGGGCCTGGTGCTGTACGGCGTGCGGGTCAACCATGTC ATGCTTCAGACTCCTCCCGAGGCTCAGGCCTACCTCGAGCCGCCCTTGACAGCGGATCGCGTTCGGCAGGTTTAC CGACGGGTCAAGGAGCAGGGCATTGACTGGCATGCCGGCCTGCCGCCGCGGAGAGACAGGCGCTACGTCATCGTG GGAGGCTCCGGGCTCGTGGGCGGGCAGATAGCTCTGAGCCTGCTGGCGGTGGGGGTGCCCCCGCAGGCCATCCGG CTGCTCGACATTCGGCCGCCGACGCGGTCCGAGTTCTCGTCGGGCGCGGCGGCGCAGGTGGCCTTCGTCAAGACG GACGTCACGTCCGAGGCCGAGGTCGAGAGCGGCATGGGGGCGTCGTGGGCAGCATCCGTCTCGGGCCTGCCGCTG ACCGTCTTCCACACGGCGGCGGTAATCCGGCCGCAGGAGCGGGACCCGGTCTTGTACCACCGGTGCTCGCGCGTC AACGTCGCCGGCACGGCGCACGCGCTGTCGGCGGCGCGCAAGGCGGGCGCGGGCCTCTTCATCCTCACGTCGAGC TCCAACGCGGGCTCGAGGGGCGTGCAGTGGCTGTTCCCGCCGTGGAGGCGGCAGCCGCGGCACTTTGCGCAGTTC ATCGGTGACGACGACTTCTCGGCCGGGCGACCGGGGCGGGCGGCGCACGAGTTCCCCAGCAACTACGCCGCGTCC AAGGCGGAGGCGGAGCGGCTGGTGTGCGGGTCGGACGCGGCGGAGATGCGGACGGCGGCGATCCGGCCGGGCAAC GGCGTCTACGGCCACCGCGACGACCACATCATCGCGCAGATGCTGGGGCGGCCGCGGATGCCGACGTTCGCGGCG CCGTGGGCGCAGAGCTGGGCGCACGTCGGCAACGTGGCGCTGGCGCACCTGCTGCTCGAGGCGGCGCTGCTGGGC CCGAAGGCGGACAAGGTGGCCGGGCGGCCGTTCATGATCTCGGACGGGGGCGCGCCGCTGCGCTTCCGCGACGTG TACACGGTGCTGGGCGCGACGGCTTCGACGGGCTTCAGCGTCAGCCACCCGCCGCCGGTGGCGATGCTGCTGCTG GCGTACGGCGTCGAGGCCTACTGCCGGCTGCTGGCGCGGCTGCCGGCGCGGCTGCAGGGCCTCGTGCCCGAGCCG GGCGAGCCGCTGTGCATGCTGCAGCCGGGGACGATTGCGTCGTCGGTCACGTCCATCACCGACACGTCGACGGCC CGGAGGCGGCCGGACGAGGGCGGGCTGGGCTACCGGCCGCTGTGCACGACGCTCGAGGGGCTCTGCGCCCAGGTC CGCGACTGGAACGAATGGGTCGAGGCGGGCGGGCGAGAGGAGAGGTGA |
| Gene | >Hirsu2|7871 ATGAGCGCAACGACGGTCGCCCTGCTGCTCCTCGCGGCGGGCCTGGTGCTGTACGGCGTGCGGGTCAACCATGTC ATGCTTCAGACTCCTCCCGAGGCTCAGGCCTACCTCGAGCCGCCCTTGACAGCGGATCGCGTTCGGCAGGTTTAC CGACGGGTCAAGGAGCAGGGCATTGACTGGCATGCCGGCCTGCCGCCGCGGAGAGACAGGCGCTACGTCATCGTG GGAGGCTCCGGTGAGTTTCATGCGCTAGGCCGAGCTGCGCCGGAGACGCGAGCGCTGACCGCGCGTCCAGGGCTC GTGGGCGGGCAGATAGCTCTGAGCCTGCTGGCGGTGGGGGTGCCCCCGCAGGCCATCCGGCTGCTCGACATTCGG CCGCCGACGCGGTCCGAGTTCTCGTCGGGCGCGGCGGCGCAGGTGGCCTTCGTCAAGACGGACGTCACGTCCGAG GCCGAGGTCGAGAGCGGCATGGGGGCGTCGTGGGCAGCATCCGTCTCGGGCCTGCCGCTGACCGTCTTCCACACG GCGGCGGTAATCCGGCCGCAGGAGCGGGACCCGGTCTTGTACCACCGGTGCTCGCGCGTCAACGTCGCCGGCACG GCGCACGCGCTGTCGGCGGCGCGCAAGGCGGGCGCGGGCCTCTTCATCCTCACGTCGAGCTCCAACGCGGGCTCG AGGGGCGTGCAGTGGCTGTTCCCGCCGTGGAGGCGGCAGCCGCGGCACTTTGCGCAGTTCATCGGTGACGACGAC TTCTCGGCCGGGCGACCGGGGCGGGCGGCGCACGAGTTCCCCAGCAACTACGCCGCGTCCAAGGCGGAGGCGGAG CGGCTGGTGTGCGGGTCGGACGCGGCGGAGATGCGGACGGCGGCGATCCGGCCGGGCAACGGCGTCTACGGCCAC CGCGACGACCACATCATCGCGCAGATGCTGGGGCGGCCGCGGATGCCGACGTTCGCGGCGCCGTGGGCGCAGAGC TGGGCGCACGTCGGCAACGTGGCGCTGGCGCACCTGCTGCTCGAGGCGGCGCTGCTGGGCCCGAAGGCGGACAAG GTGGCCGGGCGGCCGTTCATGATCTCGGACGGGGGCGCGCCGCTGCGCTTCCGCGACGTGTACACGGTGCTGGGC GCGACGGCTTCGACGGGCTTCAGCGTCAGCCACCCGCCGCCGGTGGCGATGCTGCTGCTGGCGTACGGCGTCGAG GCCTACTGCCGGCTGCTGGCGCGGCTGCCGGCGCGGCTGCAGGGCCTCGTGCCCGAGCCGGGCGAGCCGCTGTGC ATGCTGCAGCCGGGGACGATTGCGTCGTCGGTCACGTCCATCACCGACACGTCGACGGCCCGGAGGCGGCCGGAC GAGGGCGGGCTGGGCTACCGGCCGCTGTGCACGACGCTCGAGGGGCTCTGCGCCCAGGTCCGCGACTGGAACGAA TGGGTCGAGGCGGGCGGGCGAGAGGAGAGGTGA |