Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|7867
Gene name
LocationContig_482:12346..12547
Strand+
Gene length (bp)201
Transcript length (bp)201
Coding sequence length (bp)201
Protein length (aa) 67

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular Signal peptide 0.1247 0.0732 0.9479 0.1003 0.0725 0.0122 0.1755 0.0919 0.167 0.0089

SignalP

SignalP signal predicted Location Score
Yes 1 - 19 0.967397

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup10484
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|7867 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|7867
MRFSILSLAVLPLATQTFGSPQNSGPEHQNPDLPTESTKDAPEKREVTATPTTTQTSWTNLRGLWG*
Coding >Hirsu2|7867
ATGCGCTTCTCCATCCTCTCGCTCGCCGTTCTCCCGCTGGCGACTCAGACCTTTGGCTCCCCGCAAAACAGCGGA
CCGGAGCACCAGAACCCCGACCTACCAACTGAGTCGACCAAGGACGCTCCCGAAAAGCGCGAGGTGACGGCCACA
CCCACGACGACACAAACTTCCTGGACAAACTTGAGGGGATTGTGGGGCTAG
Transcript >Hirsu2|7867
ATGCGCTTCTCCATCCTCTCGCTCGCCGTTCTCCCGCTGGCGACTCAGACCTTTGGCTCCCCGCAAAACAGCGGA
CCGGAGCACCAGAACCCCGACCTACCAACTGAGTCGACCAAGGACGCTCCCGAAAAGCGCGAGGTGACGGCCACA
CCCACGACGACACAAACTTCCTGGACAAACTTGAGGGGATTGTGGGGCTAG
Gene >Hirsu2|7867
ATGCGCTTCTCCATCCTCTCGCTCGCCGTTCTCCCGCTGGCGACTCAGACCTTTGGCTCCCCGCAAAACAGCGGA
CCGGAGCACCAGAACCCCGACCTACCAACTGAGTCGACCAAGGACGCTCCCGAAAAGCGCGAGGTGACGGCCACA
CCCACGACGACACAAACTTCCTGGACAAACTTGAGGGGATTGTGGGGCTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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