© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|7860 |
| Gene name | |
| Location | Contig_481:11457..12219 |
| Strand | + |
| Gene length (bp) | 762 |
| Transcript length (bp) | 519 |
| Coding sequence length (bp) | 519 |
| Protein length (aa) | 173 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01480 | PWI | PWI domain | 2.5E-29 | 32 | 102 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9USH5|YJQ5_SCHPO | PWI domain-containing protein C825.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC825.05c PE=1 SV=1 | 1 | 160 | 4.0E-22 |
| sp|Q5ZMJ9|SRRM1_CHICK | Serine/arginine repetitive matrix protein 1 OS=Gallus gallus GN=SRRM1 PE=2 SV=1 | 19 | 141 | 4.0E-22 |
| sp|Q52KI8|SRRM1_MOUSE | Serine/arginine repetitive matrix protein 1 OS=Mus musculus GN=Srrm1 PE=1 SV=2 | 19 | 118 | 1.0E-21 |
| sp|Q5R5Q2|SRRM1_PONAB | Serine/arginine repetitive matrix protein 1 OS=Pongo abelii GN=SRRM1 PE=2 SV=1 | 19 | 118 | 2.0E-21 |
| sp|Q8IYB3|SRRM1_HUMAN | Serine/arginine repetitive matrix protein 1 OS=Homo sapiens GN=SRRM1 PE=1 SV=2 | 19 | 118 | 2.0E-21 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006397 | mRNA processing | Yes |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0006396 | RNA processing | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0016071 | mRNA metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0009987 | cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|7860 MASKVDARLLKSTKFPPEFDQKVDVEKVNMHVLKKWIEKRVFEILGNDDDVLTELCCNLIQGSRYPDIKSIQIQL TGFLDKDTALFCKELWNLLLSGQSSPQGVPKELLEAKKLELMQEKKMDADRENARRGREPQDPREQEPRESRQSW QRRLRPLRTSFAVSQTPRSWPS* |
| Coding | >Hirsu2|7860 ATGGCGTCAAAGGTCGACGCTCGACTCTTGAAGTCGACCAAATTTCCGCCCGAGTTCGACCAGAAGGTGGACGTG GAGAAGGTCAACATGCACGTTTTGAAAAAATGGATTGAGAAGAGAGTTTTCGAGATTTTGGGAAACGACGACGAC GTGTTGACGGAGCTCTGTTGCAACCTCATTCAAGGCTCGCGATACCCTGACATCAAGTCAATCCAGATACAACTC ACCGGATTTCTCGATAAAGACACCGCTTTGTTTTGCAAGGAGCTCTGGAACCTACTCCTAAGCGGCCAGAGCAGT CCCCAAGGCGTGCCTAAGGAGCTACTCGAGGCTAAGAAGCTCGAGCTCATGCAGGAGAAGAAGATGGACGCCGAT CGGGAAAATGCCCGTCGTGGCCGCGAACCTCAGGACCCCAGGGAGCAAGAGCCCCGAGAGTCGAGACAATCGTGG CAGAGGCGGCTACGGCCGCTTCGGACGTCGTTCGCCGTCTCCCAGACCCCGAGGTCGTGGCCCTCGTGA |
| Transcript | >Hirsu2|7860 ATGGCGTCAAAGGTCGACGCTCGACTCTTGAAGTCGACCAAATTTCCGCCCGAGTTCGACCAGAAGGTGGACGTG GAGAAGGTCAACATGCACGTTTTGAAAAAATGGATTGAGAAGAGAGTTTTCGAGATTTTGGGAAACGACGACGAC GTGTTGACGGAGCTCTGTTGCAACCTCATTCAAGGCTCGCGATACCCTGACATCAAGTCAATCCAGATACAACTC ACCGGATTTCTCGATAAAGACACCGCTTTGTTTTGCAAGGAGCTCTGGAACCTACTCCTAAGCGGCCAGAGCAGT CCCCAAGGCGTGCCTAAGGAGCTACTCGAGGCTAAGAAGCTCGAGCTCATGCAGGAGAAGAAGATGGACGCCGAT CGGGAAAATGCCCGTCGTGGCCGCGAACCTCAGGACCCCAGGGAGCAAGAGCCCCGAGAGTCGAGACAATCGTGG CAGAGGCGGCTACGGCCGCTTCGGACGTCGTTCGCCGTCTCCCAGACCCCGAGGTCGTGGCCCTCGTGA |
| Gene | >Hirsu2|7860 ATGGCGTCAAAGGTCGACGCTCGACTCTTGAAGTCGACCAAATTTCCGCCCGAGTTCGACCAGAAGGTGGACGTG GAGAAGGTCAACATGCACGTTTTGAAAAAGTTGGTTCTGCCCGTCCACGCTTCTCCCCCACACCTCTCACCTACG CCCTCGTGCTGACTTGTGCTGCTGCAGATGGATTGAGAAGAGAGTTTTCGAGATTTTGGGAAACGACGACGACGT GTTGACGGAGCTCTGTTGCAACCTCATTCAAGGCTCGCGATACGTTCGTTTGCCCCGACGACCCGCCCGGATGCA GGATCCTCAGCTGACTCTTTACACCAGCCTGACATCAAGTCAATCCAGATACAACTCACCGGATTTCTCGATAAA GACACCGCTTTGTTTTGCAAGGAGCTCTGGAACCTACTCCTAAGCGGCCAGAGCAGTCCCCAAGGCGTGCCTAAG GAGCTACTCGAGGCTAAGAAGCTCGAGCTCATGCAGGAGAAGAAGGTACACGTCGATGCCCTGAAGCCATGGCTG CGGCTCGTGCTAATGTCGCACCTGGTAGATGGACGCCGATCGGGAAAATGCCCGTCGTGGCCGCGAACCTCAGGA CCCCAGGGAGCAAGAGCCCCGAGAGTCGAGACAAGTTGCAGATTCTTGGCACGCACAGGGACGGCGAGGCGACCG CTCCTTCGGCAGTCGTGGCAGAGGCGGCTACGGCCGCTTCGGACGTCGTTCGCCGTCTCCCAGACCCCGAGGTCG TGGCCCTCGTGA |