Protein ID | Hirsu2|784 |
Gene name | |
Location | Contig_1162:98..1683 |
Strand | - |
Gene length (bp) | 1585 |
Transcript length (bp) | 1344 |
Coding sequence length (bp) | 1344 |
Protein length (aa) | 448 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF09362 | DUF1996 | Domain of unknown function (DUF1996) | 2.7E-84 | 34 | 285 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.1133 | 0.083 | 0.9603 | 0.1392 | 0.0649 | 0.0126 | 0.1798 | 0.1367 | 0.1108 | 0.0014 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 18 | 0.999679 |
Orthofinder run ID | 4 |
Orthogroup | 3939 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|784 MIKSAIALSAAFAAGVDAFWRMECPGRIGLARLDPIVNPGDVSNHVHSIHGSSGFYDNSSCSDLMAGDCTSCRVK QDKSSYWHPAVYFKNTDTGKIELVEQVGGMLAYYLLYGDDIVAFPDGFRMLSGNTERRKYTLGDATKPDPDKSTW GSLGQTSQEDLAQRAIGFNCLNYDRDPEPTLYRHYLPDKSFLDQNCKNGLRFEIMFPSCWKGGNAIDSPNHMDHV AFPDLVMNGACPKSHPHRLPSLMYEVIWNTNQFKGKNGHFMLSNGDTTGYGYHGDFITGWDEAFLQKAVKTCTNQ SGRIEDCPLFDILSESEVSNCAMQAPLPQALHKENVEGPMMKLPGNGESGHKGDKGDKGGKGLYPLPIPVPAPAK EPVKEPVEEPVKEPVEEQEPSTPDYPIVGQIFKETSSLAAERPAPTHLASAALDAAAKVAPEEKPTTSAAAT* |
Coding | >Hirsu2|784 ATGATCAAGTCGGCCATTGCCCTGTCGGCCGCCTTCGCCGCCGGCGTCGACGCCTTTTGGCGCATGGAGTGCCCG GGCCGCATCGGCCTCGCTCGCCTCGACCCCATCGTCAACCCGGGCGACGTCTCCAACCACGTCCACTCGATCCAC GGTTCTTCCGGCTTCTACGACAACTCGTCCTGCTCCGACCTCATGGCCGGCGACTGCACCTCGTGCCGAGTCAAG CAGGACAAGTCTTCCTACTGGCACCCGGCCGTCTACTTCAAGAACACCGACACGGGCAAGATTGAGCTCGTCGAA CAGGTCGGCGGCATGCTTGCCTACTACCTTCTCTACGGCGACGACATCGTTGCCTTCCCCGACGGCTTCCGCATG CTCTCGGGCAACACGGAGCGCCGCAAGTACACGCTGGGCGATGCCACCAAGCCCGACCCGGACAAGTCCACCTGG GGCTCCCTCGGACAGACCAGCCAGGAGGACCTGGCCCAGCGTGCCATCGGCTTCAACTGCCTCAACTATGACAGG GACCCCGAGCCCACCCTCTACCGCCACTACCTGCCCGACAAGTCGTTCCTCGACCAGAACTGCAAGAACGGCCTC CGCTTCGAGATTATGTTTCCCTCGTGCTGGAAGGGAGGCAACGCCATCGACAGCCCCAACCACATGGACCACGTC GCCTTCCCCGACCTGGTCATGAATGGCGCCTGCCCCAAGTCGCACCCGCACCGTCTGCCCAGCCTCATGTACGAG GTCATCTGGAACACGAACCAGTTCAAGGGCAAGAACGGCCACTTCATGCTCTCCAACGGCGACACGACAGGCTAC GGTTACCACGGTGATTTCATCACGGGCTGGGACGAGGCCTTCCTCCAGAAGGCCGTCAAGACGTGCACCAACCAG TCCGGCCGCATCGAGGACTGCCCCCTCTTCGACATCCTGTCGGAGAGCGAAGTCAGCAACTGCGCCATGCAAGCC CCCCTGCCCCAGGCCCTGCACAAGGAGAACGTCGAGGGCCCGATGATGAAGCTCCCGGGCAACGGCGAGTCCGGC CACAAGGGCGACAAGGGCGACAAGGGCGGCAAGGGCCTGTACCCCCTGCCCATCCCGGTCCCGGCCCCGGCCAAG GAGCCGGTCAAGGAGCCTGTCGAGGAGCCGGTCAAGGAGCCCGTCGAGGAGCAGGAGCCGTCGACGCCCGACTAT CCCATCGTCGGCCAGATCTTCAAGGAGACGTCGTCGCTGGCGGCGGAGCGGCCCGCCCCGACCCACCTGGCGTCG GCGGCCCTGGATGCAGCCGCCAAGGTGGCTCCCGAGGAGAAGCCGACGACGTCCGCGGCCGCTACGTGA |
Transcript | >Hirsu2|784 ATGATCAAGTCGGCCATTGCCCTGTCGGCCGCCTTCGCCGCCGGCGTCGACGCCTTTTGGCGCATGGAGTGCCCG GGCCGCATCGGCCTCGCTCGCCTCGACCCCATCGTCAACCCGGGCGACGTCTCCAACCACGTCCACTCGATCCAC GGTTCTTCCGGCTTCTACGACAACTCGTCCTGCTCCGACCTCATGGCCGGCGACTGCACCTCGTGCCGAGTCAAG CAGGACAAGTCTTCCTACTGGCACCCGGCCGTCTACTTCAAGAACACCGACACGGGCAAGATTGAGCTCGTCGAA CAGGTCGGCGGCATGCTTGCCTACTACCTTCTCTACGGCGACGACATCGTTGCCTTCCCCGACGGCTTCCGCATG CTCTCGGGCAACACGGAGCGCCGCAAGTACACGCTGGGCGATGCCACCAAGCCCGACCCGGACAAGTCCACCTGG GGCTCCCTCGGACAGACCAGCCAGGAGGACCTGGCCCAGCGTGCCATCGGCTTCAACTGCCTCAACTATGACAGG GACCCCGAGCCCACCCTCTACCGCCACTACCTGCCCGACAAGTCGTTCCTCGACCAGAACTGCAAGAACGGCCTC CGCTTCGAGATTATGTTTCCCTCGTGCTGGAAGGGAGGCAACGCCATCGACAGCCCCAACCACATGGACCACGTC GCCTTCCCCGACCTGGTCATGAATGGCGCCTGCCCCAAGTCGCACCCGCACCGTCTGCCCAGCCTCATGTACGAG GTCATCTGGAACACGAACCAGTTCAAGGGCAAGAACGGCCACTTCATGCTCTCCAACGGCGACACGACAGGCTAC GGTTACCACGGTGATTTCATCACGGGCTGGGACGAGGCCTTCCTCCAGAAGGCCGTCAAGACGTGCACCAACCAG TCCGGCCGCATCGAGGACTGCCCCCTCTTCGACATCCTGTCGGAGAGCGAAGTCAGCAACTGCGCCATGCAAGCC CCCCTGCCCCAGGCCCTGCACAAGGAGAACGTCGAGGGCCCGATGATGAAGCTCCCGGGCAACGGCGAGTCCGGC CACAAGGGCGACAAGGGCGACAAGGGCGGCAAGGGCCTGTACCCCCTGCCCATCCCGGTCCCGGCCCCGGCCAAG GAGCCGGTCAAGGAGCCTGTCGAGGAGCCGGTCAAGGAGCCCGTCGAGGAGCAGGAGCCGTCGACGCCCGACTAT CCCATCGTCGGCCAGATCTTCAAGGAGACGTCGTCGCTGGCGGCGGAGCGGCCCGCCCCGACCCACCTGGCGTCG GCGGCCCTGGATGCAGCCGCCAAGGTGGCTCCCGAGGAGAAGCCGACGACGTCCGCGGCCGCTACGTGA |
Gene | >Hirsu2|784 ATGATCAAGTCGGCCATTGCCCTGTCGGCCGCCTTCGCCGCCGGCGTCGACGCCTTTTGGCGCATGGAGTGCCCG GGCCGCATCGGCCTCGCTCGCCTCGACCCCATCGTCAACCCGGGCGACGTCTCCAACCACGTCCACTCGATCCAC GGTTCTTCCGGTACGCTGCCTCCTTGTCCGCCTCGACGCGCCCGTCTGCGCCCAAAGGCTGACCCGACTCGCTAG GCTTCTACGACAACTCGTCCTGCTCCGACCTCATGGCCGGCGACTGCACCTCGTGCCGAGTCAAGCAGGACAAGT CTTCCTACTGGCACCCGGCCGTCTACTTCAAGAACACCGACACGGGCAAGATTGAGCTCGTCGAACAGGTCGGCG GCATGCTTGCGTACGTGGTCGCTCCTCTCGCCCCTCTCGCCCCTCTCGCGTCGCGCGGCCCCGCACCCGACACTG ACCCTCGCCCGCCAGCTACTACCTTCTCTACGGCGACGACATCGTTGCCTTCCCCGACGGCTTCCGCATGCTCTC GGGCAACACGGAGCGCCGCAAGTACACGCTGGGCGATGCCACCAAGCCCGACCCGGACAAGTCCACCTGGGGCTC CCTCGGACAGACCAGCCAGGAGGACCTGGCCCAGCGTGCCATCGGCTTCAACTGCCTCAACTATGACAGGGACCC CGAGCCCACCCTCTACCGCCACTACCTGCCCGACAAGTCGTTCCTCGACCAGAACTGCAAGAACGGCCTCCGCTT CGAGATTATGTTTCCCTCGTGCTGGAAGGGAGGCAACGCCATCGACAGCCCCAACCACATGGACCACGTCGCCTT CCCCGACCTGGTCATGAATGGCGCCTGCCCCAAGTCGCACCCGCACCGTCTGCCCAGCCTCATGTACGAGGTCAT CTGGAACACGAACCAGTTCAAGGGCAAGAACGGCCACTTCATGCTCTCCAACGGCGACACGACAGGTGCGGCTCG CCCCTGCTCAATGGCCGCCCGCCATGCTGACGCTCGACAGGCTACGGTTACCACGGTGATTTCATCACGGGCTGG GACGAGGCCTTCCTCCAGAAGGCCGTCAAGACGTGCACCAACCAGTCCGGCCGCATCGAGGACTGCCCCCTCTTC GACATCCTGTCGGAGAGCGAAGTCAGCAACTGCGCCATGCAAGCCCCCCTGCCCCAGGCCCTGCACAAGGAGAAC GTCGAGGGCCCGATGATGAAGCTCCCGGGCAACGGCGAGTCCGGCCACAAGGGCGACAAGGGCGACAAGGGCGGC AAGGGCCTGTACCCCCTGCCCATCCCGGTCCCGGCCCCGGCCAAGGAGCCGGTCAAGGAGCCTGTCGAGGAGCCG GTCAAGGAGCCCGTCGAGGAGCAGGAGCCGTCGACGCCCGACTATCCCATCGTCGGCCAGATCTTCAAGGAGACG TCGTCGCTGGCGGCGGAGCGGCCCGCCCCGACCCACCTGGCGTCGGCGGCCCTGGATGCAGCCGCCAAGGTGGCT CCCGAGGAGAAGCCGACGACGTCCGCGGCCGCGTACGCGACGCCGGCGCCCGACGCCAAGACGTACTACAGCACC CAGTACGTGA |