Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|7835
Gene name
LocationContig_48:4354..5818
Strand+
Gene length (bp)1464
Transcript length (bp)1293
Coding sequence length (bp)1293
Protein length (aa) 431

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07970 COPIIcoated_ERV Endoplasmic reticulum vesicle transporter 8.3E-87 141 412
PF13850 ERGIC_N Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 5.6E-30 7 96

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q09895|YAI8_SCHPO Uncharacterized protein C24B11.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24B11.08c PE=3 SV=1 1 424 1.0E-112
sp|P39727|ERV46_YEAST ER-derived vesicles protein ERV46 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV46 PE=1 SV=2 4 421 1.0E-91
sp|Q6NVS2|ERGI3_XENTR Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus tropicalis GN=ergic3 PE=2 SV=1 1 424 8.0E-91
sp|Q803I2|ERGI3_DANRE Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Danio rerio GN=ergic3 PE=2 SV=1 1 424 7.0E-90
sp|Q66KH2|ERGI3_XENLA Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus laevis GN=ergic3 PE=2 SV=1 1 424 5.0E-88
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Swissprot ID Swissprot Description Start End E-value
sp|Q09895|YAI8_SCHPO Uncharacterized protein C24B11.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24B11.08c PE=3 SV=1 1 424 1.0E-112
sp|P39727|ERV46_YEAST ER-derived vesicles protein ERV46 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV46 PE=1 SV=2 4 421 1.0E-91
sp|Q6NVS2|ERGI3_XENTR Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus tropicalis GN=ergic3 PE=2 SV=1 1 424 8.0E-91
sp|Q803I2|ERGI3_DANRE Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Danio rerio GN=ergic3 PE=2 SV=1 1 424 7.0E-90
sp|Q66KH2|ERGI3_XENLA Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus laevis GN=ergic3 PE=2 SV=1 1 424 5.0E-88
sp|Q5EAE0|ERGI3_BOVIN Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Bos taurus GN=ERGIC3 PE=2 SV=1 1 424 3.0E-85
sp|Q9Y282|ERGI3_HUMAN Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Homo sapiens GN=ERGIC3 PE=1 SV=1 1 424 1.0E-84
sp|Q9CQE7|ERGI3_MOUSE Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Mus musculus GN=Ergic3 PE=1 SV=1 1 424 2.0E-84
sp|Q5R8G3|ERGI3_PONAB Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Pongo abelii GN=ERGIC3 PE=2 SV=1 1 424 5.0E-84
sp|Q54DW2|ERGI3_DICDI Probable endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Dictyostelium discoideum GN=ergic3 PE=3 SV=1 5 424 1.0E-82
sp|Q4R8X1|ERGI3_MACFA Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Macaca fascicularis GN=ERGIC3 PE=2 SV=1 1 424 1.0E-80
sp|Q7T2D4|ERGI2_DANRE Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Danio rerio GN=ergic2 PE=2 SV=1 9 406 1.0E-24
sp|Q4R5C3|ERGI2_MACFA Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Macaca fascicularis GN=ERGIC2 PE=2 SV=1 5 406 2.0E-22
sp|Q5EHU7|ERGI2_GECJA Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Gecko japonicus GN=ERGIC2 PE=2 SV=1 5 408 3.0E-22
sp|Q9CR89|ERGI2_MOUSE Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Mus musculus GN=Ergic2 PE=1 SV=1 5 406 7.0E-22
sp|O94283|ERV41_SCHPO ER-derived vesicles protein 41 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erv41 PE=1 SV=1 1 413 1.0E-20
sp|Q4V8Y6|ERGI1_DANRE Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Danio rerio GN=ergic1 PE=2 SV=1 190 426 1.0E-19
sp|Q96RQ1|ERGI2_HUMAN Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Homo sapiens GN=ERGIC2 PE=1 SV=2 193 406 4.0E-19
sp|Q969X5|ERGI1_HUMAN Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Homo sapiens GN=ERGIC1 PE=1 SV=1 190 426 7.0E-19
sp|Q9DC16|ERGI1_MOUSE Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Mus musculus GN=Ergic1 PE=1 SV=1 190 426 3.0E-18
sp|Q04651|ERV41_YEAST ER-derived vesicles protein ERV41 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV41 PE=1 SV=1 10 411 6.0E-18
sp|Q6NS19|ERGI1_XENLA Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Xenopus laevis GN=ergic1 PE=2 SV=1 190 426 3.0E-15
sp|Q9T042|PDI54_ARATH Protein disulfide-isomerase 5-4 OS=Arabidopsis thaliana GN=PDIL5-4 PE=2 SV=1 198 425 5.0E-13
sp|Q69SA9|PDI54_ORYSJ Protein disulfide isomerase-like 5-4 OS=Oryza sativa subsp. japonica GN=PDIL5-4 PE=2 SV=1 190 424 1.0E-09
sp|Q9LJU2|PDI53_ARATH Protein disulfide-isomerase 5-3 OS=Arabidopsis thaliana GN=PDIL5-3 PE=2 SV=1 1 127 1.0E-09
sp|Q9LJU2|PDI53_ARATH Protein disulfide-isomerase 5-3 OS=Arabidopsis thaliana GN=PDIL5-3 PE=2 SV=1 198 424 2.0E-08
sp|Q969X5|ERGI1_HUMAN Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Homo sapiens GN=ERGIC1 PE=1 SV=1 7 116 4.0E-08
sp|Q9DC16|ERGI1_MOUSE Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Mus musculus GN=Ergic1 PE=1 SV=1 7 116 4.0E-08
sp|Q69SA9|PDI54_ORYSJ Protein disulfide isomerase-like 5-4 OS=Oryza sativa subsp. japonica GN=PDIL5-4 PE=2 SV=1 1 105 1.0E-07
sp|Q6NS19|ERGI1_XENLA Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Xenopus laevis GN=ergic1 PE=2 SV=1 7 108 2.0E-07
sp|Q9T042|PDI54_ARATH Protein disulfide-isomerase 5-4 OS=Arabidopsis thaliana GN=PDIL5-4 PE=2 SV=1 1 133 2.0E-07
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 48 0.5

Transmembrane Domains

Domain # Start End Length
1 20 42 22
2 389 411 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|7835
MPAKSRFTKLDAFTKTVDEARIRTTSGGVVTIVSLLVVLFLAWGEWAEYRRVVIHPELIVDKGRGERMEIHLNIT
FPKMPCELLTLDVMDVSGEQQHGIAHGVNKVRLRPKHQGGGVIDVKSLALHDETAEHLDPKYCGECYGASAPANA
QKPGCCNSCDEVREAYAGQGWAFGRGEGVEQCEREHYAEKLDAQREEGCRIEGGLQVNKVVGNFHLAPGRSFSSG
NIHVHDLKNYWDTPDGKQHDFTHVIHQLRFGPQIPDHIKQKLGGSKAMPWTNHHLNPLDGSQQETNDPNLNYMYF
VKIVPTSYLALGWEKKMQKIAGMMDGSADGSVETHQYSVTSHKRSLTGGNDAEEGHAERQHSRGGIPGVFFSYDI
SPMKVINREEQSKSFLGFLAGLCAIVGGTLTVAAAVDRGLFEGATRLKKMRSKDL*
Coding >Hirsu2|7835
ATGCCGGCCAAGTCGAGATTCACCAAGCTCGATGCCTTCACGAAGACGGTGGACGAGGCGCGGATCCGGACGACG
AGCGGCGGCGTGGTCACCATCGTCTCGCTGCTCGTCGTCCTGTTCCTGGCGTGGGGGGAATGGGCCGAATACCGC
CGGGTCGTGATACACCCGGAGCTTATTGTGGACAAGGGCAGAGGCGAGCGCATGGAGATCCACCTCAACATCACC
TTCCCCAAGATGCCGTGCGAGCTGCTGACGCTCGACGTCATGGACGTGTCCGGTGAGCAGCAGCACGGCATCGCG
CACGGCGTCAACAAGGTGCGGCTGCGGCCCAAGCACCAGGGAGGCGGCGTCATCGACGTCAAGTCGCTGGCGCTG
CACGACGAGACGGCCGAACACCTCGACCCCAAGTACTGCGGCGAGTGCTACGGCGCGAGCGCGCCGGCCAACGCG
CAGAAGCCGGGCTGCTGCAACAGCTGCGACGAGGTGCGCGAGGCCTACGCCGGCCAGGGCTGGGCCTTTGGCCGC
GGCGAGGGCGTCGAGCAGTGCGAGCGCGAGCACTACGCCGAGAAGCTGGACGCGCAGCGCGAGGAGGGCTGCCGG
ATCGAGGGCGGCCTGCAGGTCAACAAGGTGGTCGGCAACTTCCACCTGGCGCCCGGGCGCAGCTTCAGCAGCGGC
AACATCCACGTCCACGACCTCAAGAACTACTGGGACACGCCCGACGGCAAGCAGCACGACTTCACGCACGTCATC
CACCAGCTGCGCTTCGGCCCGCAGATACCCGACCACATCAAGCAGAAGCTGGGCGGCTCCAAGGCGATGCCGTGG
ACCAACCACCACCTCAACCCGCTCGACGGCTCCCAGCAGGAGACCAACGACCCCAACCTCAACTACATGTACTTT
GTCAAGATCGTGCCGACCTCGTACCTGGCCCTCGGCTGGGAGAAGAAGATGCAGAAGATTGCGGGCATGATGGAC
GGCAGCGCCGACGGCAGCGTCGAGACGCACCAGTACTCCGTCACCAGCCACAAGAGGAGCCTGACGGGAGGAAAC
GACGCCGAGGAGGGCCACGCAGAGCGGCAGCACTCGCGCGGCGGCATCCCGGGCGTCTTCTTCTCCTACGACATT
TCCCCCATGAAGGTGATCAACCGCGAGGAACAGTCCAAGTCCTTTCTCGGGTTCCTGGCCGGGCTCTGCGCCATC
GTCGGCGGCACGCTGACGGTGGCGGCGGCCGTCGACCGGGGACTGTTCGAGGGGGCGACGCGGCTGAAGAAGATG
CGATCCAAGGATCTGTGA
Transcript >Hirsu2|7835
ATGCCGGCCAAGTCGAGATTCACCAAGCTCGATGCCTTCACGAAGACGGTGGACGAGGCGCGGATCCGGACGACG
AGCGGCGGCGTGGTCACCATCGTCTCGCTGCTCGTCGTCCTGTTCCTGGCGTGGGGGGAATGGGCCGAATACCGC
CGGGTCGTGATACACCCGGAGCTTATTGTGGACAAGGGCAGAGGCGAGCGCATGGAGATCCACCTCAACATCACC
TTCCCCAAGATGCCGTGCGAGCTGCTGACGCTCGACGTCATGGACGTGTCCGGTGAGCAGCAGCACGGCATCGCG
CACGGCGTCAACAAGGTGCGGCTGCGGCCCAAGCACCAGGGAGGCGGCGTCATCGACGTCAAGTCGCTGGCGCTG
CACGACGAGACGGCCGAACACCTCGACCCCAAGTACTGCGGCGAGTGCTACGGCGCGAGCGCGCCGGCCAACGCG
CAGAAGCCGGGCTGCTGCAACAGCTGCGACGAGGTGCGCGAGGCCTACGCCGGCCAGGGCTGGGCCTTTGGCCGC
GGCGAGGGCGTCGAGCAGTGCGAGCGCGAGCACTACGCCGAGAAGCTGGACGCGCAGCGCGAGGAGGGCTGCCGG
ATCGAGGGCGGCCTGCAGGTCAACAAGGTGGTCGGCAACTTCCACCTGGCGCCCGGGCGCAGCTTCAGCAGCGGC
AACATCCACGTCCACGACCTCAAGAACTACTGGGACACGCCCGACGGCAAGCAGCACGACTTCACGCACGTCATC
CACCAGCTGCGCTTCGGCCCGCAGATACCCGACCACATCAAGCAGAAGCTGGGCGGCTCCAAGGCGATGCCGTGG
ACCAACCACCACCTCAACCCGCTCGACGGCTCCCAGCAGGAGACCAACGACCCCAACCTCAACTACATGTACTTT
GTCAAGATCGTGCCGACCTCGTACCTGGCCCTCGGCTGGGAGAAGAAGATGCAGAAGATTGCGGGCATGATGGAC
GGCAGCGCCGACGGCAGCGTCGAGACGCACCAGTACTCCGTCACCAGCCACAAGAGGAGCCTGACGGGAGGAAAC
GACGCCGAGGAGGGCCACGCAGAGCGGCAGCACTCGCGCGGCGGCATCCCGGGCGTCTTCTTCTCCTACGACATT
TCCCCCATGAAGGTGATCAACCGCGAGGAACAGTCCAAGTCCTTTCTCGGGTTCCTGGCCGGGCTCTGCGCCATC
GTCGGCGGCACGCTGACGGTGGCGGCGGCCGTCGACCGGGGACTGTTCGAGGGGGCGACGCGGCTGAAGAAGATG
CGATCCAAGGATCTGTGA
Gene >Hirsu2|7835
ATGCCGGCCAAGTCGAGATTCACCAAGCTCGATGCCTTCACGAAGACGGTGGACGAGGCGCGGATCCGGACGACG
AGCGGCGGCGTGGTCACCATCGTCTCGCTGCTCGTCGTCCTGTTCCTGGCGTGGGGGGAATGGGCCGAATACCGC
CGGGTCGTGATACACCCGGAGCTTATTGTGGACAAGGGCAGAGGTAAGGCGACGCGGACGCAGCCCAGGCGTGGG
TTGCGCGTGGCGGCCGAGGACGAGGCACGAGGGGGCGAAGGCGCGCGCTGACCAGAGGCCGGCACAGGCGAGCGC
ATGGAGATCCACCTCAACATCACCTTCCCCAAGATGCCGTGCGAGCTGCTGACGCTCGACGTCATGGACGTGTCC
GGTGAGCAGCAGCACGGCATCGCGCACGGCGTCAACAAGGTGCGGCTGCGGCCCAAGCACCAGGGAGGCGGCGTC
ATCGACGTCAAGTCGCTGGCGCTGCACGACGAGACGGCCGAACACCTCGACCCCAAGTACTGCGGCGAGTGCTAC
GGCGCGAGCGCGCCGGCCAACGCGCAGAAGCCGGGCTGCTGCAACAGCTGCGACGAGGTGCGCGAGGCCTACGCC
GGCCAGGGCTGGGCCTTTGGCCGCGGCGAGGGCGTCGAGCAGTGCGAGCGCGAGCACTACGCCGAGAAGCTGGAC
GCGCAGCGCGAGGAGGGCTGCCGGATCGAGGGCGGCCTGCAGGTCAACAAGGTGGTCGGCAACTTCCACCTGGCG
CCCGGGCGCAGCTTCAGCAGCGGCAACATCCACGTCCACGACCTCAAGAACTACTGGGACACGCCCGACGGCAAG
CAGCACGACTTCACGCACGTCATCCACCAGCTGCGCTTCGGCCCGCAGATACCCGACCACATCAAGCAGAAGCTG
GGCGGCTCCAAGGCGATGCCGTGGACCAACCACCACCTCAACCCGCTCGACGGCTCCCAGCAGGAGACCAACGAC
CCCAACCTCAACTACATGTACTTTGTCAAGATCGTGCCGACCTCGTACCTGGCCCTCGGCTGGGAGAAGAAGATG
CAGAAGATTGCGGGCATGATGGACGGCAGCGCCGACGGCAGCGTCGAGACGCACCAGTACTCCGTCACCAGCCAC
AAGAGGAGCCTGACGGGAGGAAACGACGCCGAGGAGGGCCACGCAGAGCGGCAGCACTCGCGCGGCGGCATCCCG
GGCGTCTTCTTCTCCTACGTAAGTCAAGCAAAATCCCTGACGACGACGGCGGCGACGAAGACGACGACGGAGAGG
CTGACGGCAGAGCAGGACATTTCCCCCATGAAGGTGATCAACCGCGAGGAACAGTCCAAGTCCTTTCTCGGGTTC
CTGGCCGGGCTCTGCGCCATCGTCGGCGGCACGCTGACGGTGGCGGCGGCCGTCGACCGGGGACTGTTCGAGGGG
GCGACGCGGCTGAAGAAGATGCGATCCAAGGATCTGTGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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