© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|7820 |
| Gene name | |
| Location | Contig_478:4272..5505 |
| Strand | - |
| Gene length (bp) | 1233 |
| Transcript length (bp) | 1143 |
| Coding sequence length (bp) | 1143 |
| Protein length (aa) | 381 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.1477 | 0.2807 | 0.0541 | 0.0587 | 0.1971 | 0.0684 | 0.8006 | 0.3536 | 0.5275 | 0.0434 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 31 | 0.998082 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 9 | 31 | 22 |
| 2 | 86 | 108 | 22 |
| 3 | 129 | 151 | 22 |
| 4 | 171 | 193 | 22 |
| 5 | 206 | 228 | 22 |
| 6 | 255 | 272 | 17 |
| 7 | 307 | 329 | 22 |
| 8 | 339 | 361 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 10478 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|7820 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|7820 MARLWRGRLIRAVAASPFLLLSLLCLSLMDAEKMGKQWQPMLDAGRIEWDGGSVPILSAFYHNKILDDFWRGLTV LFSPSTLGYDPVAWWVGFVFVIHLAPLYAIWMLESHRAVSTSGPARLPTIFTSLGQALGSGVVAPVFYFLCLVFG RPSSDLARLKSEGKSARSWEIRPVPFMLPLVLLLHMVGVSAAFLAPRFETRHFWTWTWLLSPMALGFGDAVLARL FYAPAPCSLERRGREGQGRQKRSAFGSPELQLGALAVLSAGTWIYMLARAPFSLSDIFVPETIAAQDDFILHSRV IMQLDCLVTFGASLLWLLYVCFDLARAGVLTEADGLSLFGLLPVVLAAGGPGTACAVLWGWKERAAQRWVAGCEE EGHDD* |
| Coding | >Hirsu2|7820 ATGGCGCGACTCTGGAGAGGGCGTCTCATCCGCGCCGTGGCCGCCTCGCCGTTCCTGCTCCTGTCCCTGCTATGC CTGAGCCTCATGGACGCGGAAAAGATGGGCAAGCAATGGCAGCCGATGCTCGACGCGGGCCGGATAGAGTGGGAC GGCGGCTCCGTCCCGATCCTGTCGGCGTTTTATCACAACAAGATACTGGACGACTTCTGGCGCGGACTGACCGTC TTGTTCTCGCCGTCCACGCTGGGCTACGACCCCGTCGCCTGGTGGGTTGGCTTCGTTTTTGTCATTCATCTCGCG CCGCTTTACGCCATCTGGATGCTGGAATCGCATCGCGCGGTCAGCACCAGCGGCCCGGCCAGGCTTCCGACAATC TTCACCAGCCTCGGCCAGGCTCTTGGCTCTGGCGTCGTCGCGCCCGTCTTCTACTTCCTGTGCCTCGTCTTCGGC CGCCCGAGCTCGGATCTGGCCCGCCTCAAGTCGGAGGGGAAGTCGGCAAGGTCGTGGGAAATCCGTCCCGTCCCG TTCATGCTGCCTCTCGTTCTGCTGTTGCACATGGTCGGCGTCAGTGCCGCGTTTCTCGCCCCGCGGTTCGAGACG CGACACTTCTGGACTTGGACCTGGCTGCTCTCGCCCATGGCCCTTGGGTTCGGCGACGCAGTGCTGGCGCGCCTG TTCTACGCGCCGGCTCCTTGCTCTCTTGAAAGGCGAGGACGAGAAGGGCAGGGAAGGCAGAAGCGCAGCGCGTTT GGGTCACCGGAGCTGCAACTCGGAGCTCTGGCCGTTCTGTCGGCTGGCACCTGGATTTACATGCTCGCGCGCGCC CCCTTCTCCCTGTCCGACATCTTTGTGCCCGAGACGATTGCGGCACAGGACGACTTCATCCTGCACTCGCGGGTC ATCATGCAGCTCGACTGCCTCGTTACCTTCGGCGCCTCCCTGTTGTGGCTGCTGTACGTCTGTTTCGATCTCGCC AGGGCTGGTGTTCTCACTGAGGCCGATGGACTCTCCCTCTTTGGTCTCTTGCCCGTCGTCCTGGCCGCGGGAGGG CCGGGGACGGCTTGCGCGGTTCTCTGGGGTTGGAAGGAGAGGGCGGCACAGAGATGGGTTGCAGGATGTGAAGAA GAAGGGCATGACGACTGA |
| Transcript | >Hirsu2|7820 ATGGCGCGACTCTGGAGAGGGCGTCTCATCCGCGCCGTGGCCGCCTCGCCGTTCCTGCTCCTGTCCCTGCTATGC CTGAGCCTCATGGACGCGGAAAAGATGGGCAAGCAATGGCAGCCGATGCTCGACGCGGGCCGGATAGAGTGGGAC GGCGGCTCCGTCCCGATCCTGTCGGCGTTTTATCACAACAAGATACTGGACGACTTCTGGCGCGGACTGACCGTC TTGTTCTCGCCGTCCACGCTGGGCTACGACCCCGTCGCCTGGTGGGTTGGCTTCGTTTTTGTCATTCATCTCGCG CCGCTTTACGCCATCTGGATGCTGGAATCGCATCGCGCGGTCAGCACCAGCGGCCCGGCCAGGCTTCCGACAATC TTCACCAGCCTCGGCCAGGCTCTTGGCTCTGGCGTCGTCGCGCCCGTCTTCTACTTCCTGTGCCTCGTCTTCGGC CGCCCGAGCTCGGATCTGGCCCGCCTCAAGTCGGAGGGGAAGTCGGCAAGGTCGTGGGAAATCCGTCCCGTCCCG TTCATGCTGCCTCTCGTTCTGCTGTTGCACATGGTCGGCGTCAGTGCCGCGTTTCTCGCCCCGCGGTTCGAGACG CGACACTTCTGGACTTGGACCTGGCTGCTCTCGCCCATGGCCCTTGGGTTCGGCGACGCAGTGCTGGCGCGCCTG TTCTACGCGCCGGCTCCTTGCTCTCTTGAAAGGCGAGGACGAGAAGGGCAGGGAAGGCAGAAGCGCAGCGCGTTT GGGTCACCGGAGCTGCAACTCGGAGCTCTGGCCGTTCTGTCGGCTGGCACCTGGATTTACATGCTCGCGCGCGCC CCCTTCTCCCTGTCCGACATCTTTGTGCCCGAGACGATTGCGGCACAGGACGACTTCATCCTGCACTCGCGGGTC ATCATGCAGCTCGACTGCCTCGTTACCTTCGGCGCCTCCCTGTTGTGGCTGCTGTACGTCTGTTTCGATCTCGCC AGGGCTGGTGTTCTCACTGAGGCCGATGGACTCTCCCTCTTTGGTCTCTTGCCCGTCGTCCTGGCCGCGGGAGGG CCGGGGACGGCTTGCGCGGTTCTCTGGGGTTGGAAGGAGAGGGCGGCACAGAGATGGGTTGCAGGATGTGAAGAA GAAGGGCATGACGACTGA |
| Gene | >Hirsu2|7820 ATGGCGCGACTCTGGAGAGGGCGTCTCATCCGCGCCGTGGCCGCCTCGCCGTTCCTGCTCCTGTCCCTGCTATGC CTGAGCCTCATGGACGCGGAAAAGATGGGCAAGCAATGGCAGCCGATGCTCGACGCGGGCCGGATAGAGTGGGAC GGCGGCTCCGTCCCGATCCTGTCGGCGTTTTATCACAACAAGATACTGGACGACTTCTGGCGCGGACTGACCGTC TTGTTCTCGCCGTCCACGCTGGGCTACGACCCCGTCGCCTGGTGGGTTGGCTTCGTTTTTGTCATTCATCTCGCG CCGCTTTACGCCATCTGGATGCTGGAATCGCATCGCGCGGTCAGCACCAGCGGCCCGGCCAGGCTGTAAGTCTTG TCTTTCACGTCCACATGCTTGCCGTTGCGAGTGCTCGGCTGGGTCTGGCCTGGGAGACTGGAGGCTCATGACGAG TTCAGTCCGACAATCTTCACCAGCCTCGGCCAGGCTCTTGGCTCTGGCGTCGTCGCGCCCGTCTTCTACTTCCTG TGCCTCGTCTTCGGCCGCCCGAGCTCGGATCTGGCCCGCCTCAAGTCGGAGGGGAAGTCGGCAAGGTCGTGGGAA ATCCGTCCCGTCCCGTTCATGCTGCCTCTCGTTCTGCTGTTGCACATGGTCGGCGTCAGTGCCGCGTTTCTCGCC CCGCGGTTCGAGACGCGACACTTCTGGACTTGGACCTGGCTGCTCTCGCCCATGGCCCTTGGGTTCGGCGACGCA GTGCTGGCGCGCCTGTTCTACGCGCCGGCTCCTTGCTCTCTTGAAAGGCGAGGACGAGAAGGGCAGGGAAGGCAG AAGCGCAGCGCGTTTGGGTCACCGGAGCTGCAACTCGGAGCTCTGGCCGTTCTGTCGGCTGGCACCTGGATTTAC ATGCTCGCGCGCGCCCCCTTCTCCCTGTCCGACATCTTTGTGCCCGAGACGATTGCGGCACAGGACGACTTCATC CTGCACTCGCGGGTCATCATGCAGCTCGACTGCCTCGTTACCTTCGGCGCCTCCCTGTTGTGGCTGCTGTACGTC TGTTTCGATCTCGCCAGGGCTGGTGTTCTCACTGAGGCCGATGGACTCTCCCTCTTTGGTCTCTTGCCCGTCGTC CTGGCCGCGGGAGGGCCGGGGACGGCTTGCGCGGTTCTCTGGGGTTGGAAGGAGAGGGCGGCACAGAGATGGGTT GCAGGATGTGAAGAAGAAGGGCATGACGACTGA |