© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|7812 |
| Gene name | |
| Location | Contig_477:906..2278 |
| Strand | - |
| Gene length (bp) | 1372 |
| Transcript length (bp) | 1011 |
| Coding sequence length (bp) | 1011 |
| Protein length (aa) | 337 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02453 | Reticulon | Reticulon | 1.7E-34 | 79 | 237 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P53694|RTN1_SCHPO | Reticulon-like protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rtn1 PE=1 SV=1 | 81 | 254 | 1.0E-12 |
| sp|Q04947|RTN1_YEAST | Reticulon-like protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTN1 PE=1 SV=1 | 80 | 332 | 4.0E-08 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 54 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 92 | 114 | 22 |
| 2 | 118 | 140 | 22 |
| 3 | 177 | 199 | 22 |
| 4 | 203 | 225 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|7812 MSDALDTAPTANGGGAFEAAKANAASAYDAVTNGPVAQNVKDHSAKASSELSTLAASRKTPSNPAATGQPLTHYH SFFSELLSWNNPRASAIAYASAITFIFAARYLDVVRWAFKLCWMALAVTVSAEAAGKVVLNHGLATQMRPRRYYT ISRSTLDNMIGDVHELANFFVIEAQRILFAENVAASAAACVAAFLSYHLAKLVPYWGLAIIATTIAFFAPLVYTS NQELIDHHIKNASDVISAQTAQVRTAAQKQAGQLTTMGKQYAGDYTGKVQEMIRGRSASPEAATKPAPSHKGLEF PTPPTEEPKKVVEPQGPIPVDPVEPVVPEQEPMIAS* |
| Coding | >Hirsu2|7812 ATGTCTGACGCCCTCGATACGGCCCCGACGGCCAATGGTGGCGGTGCTTTCGAGGCCGCCAAGGCCAACGCCGCC TCTGCCTACGATGCCGTGACCAACGGCCCCGTTGCGCAAAACGTCAAGGACCACTCCGCCAAGGCATCGTCCGAG CTGTCCACCCTGGCAGCTTCCCGCAAGACGCCGTCCAACCCGGCCGCCACCGGACAGCCTCTGACACACTATCAC TCCTTTTTCTCGGAGCTCTTGTCGTGGAACAATCCCCGCGCCTCCGCCATCGCTTATGCCTCCGCCATCACCTTC ATCTTCGCGGCTAGGTACCTCGACGTGGTCCGTTGGGCGTTTAAGCTGTGCTGGATGGCGCTCGCCGTCACCGTC AGCGCCGAGGCTGCCGGCAAGGTCGTCTTGAACCACGGGCTTGCCACGCAGATGCGGCCCCGTCGATACTACACC ATCTCGCGGTCGACTCTGGACAACATGATCGGCGATGTCCACGAGCTGGCCAACTTCTTCGTCATCGAGGCTCAG CGCATCCTCTTCGCCGAGAACGTCGCCGCCTCTGCCGCCGCCTGCGTTGCCGCCTTCCTCTCGTACCATCTCGCC AAGCTGGTCCCGTACTGGGGTCTCGCCATCATCGCCACCACGATCGCCTTCTTCGCCCCCCTCGTCTACACGTCG AACCAGGAGCTCATTGACCACCACATCAAGAATGCCTCCGACGTCATCAGCGCCCAGACGGCCCAGGTCCGAACT GCCGCCCAGAAGCAGGCCGGCCAGCTCACCACCATGGGCAAGCAGTACGCTGGCGACTACACCGGCAAGGTCCAG GAGATGATCCGCGGCCGCAGCGCTTCCCCCGAGGCCGCGACCAAGCCGGCACCCTCCCACAAGGGCCTCGAGTTT CCCACCCCCCCGACCGAGGAGCCGAAGAAGGTGGTGGAGCCCCAGGGCCCGATTCCCGTGGACCCCGTTGAGCCC GTTGTGCCTGAGCAGGAGCCCATGATTGCTTCCTAG |
| Transcript | >Hirsu2|7812 ATGTCTGACGCCCTCGATACGGCCCCGACGGCCAATGGTGGCGGTGCTTTCGAGGCCGCCAAGGCCAACGCCGCC TCTGCCTACGATGCCGTGACCAACGGCCCCGTTGCGCAAAACGTCAAGGACCACTCCGCCAAGGCATCGTCCGAG CTGTCCACCCTGGCAGCTTCCCGCAAGACGCCGTCCAACCCGGCCGCCACCGGACAGCCTCTGACACACTATCAC TCCTTTTTCTCGGAGCTCTTGTCGTGGAACAATCCCCGCGCCTCCGCCATCGCTTATGCCTCCGCCATCACCTTC ATCTTCGCGGCTAGGTACCTCGACGTGGTCCGTTGGGCGTTTAAGCTGTGCTGGATGGCGCTCGCCGTCACCGTC AGCGCCGAGGCTGCCGGCAAGGTCGTCTTGAACCACGGGCTTGCCACGCAGATGCGGCCCCGTCGATACTACACC ATCTCGCGGTCGACTCTGGACAACATGATCGGCGATGTCCACGAGCTGGCCAACTTCTTCGTCATCGAGGCTCAG CGCATCCTCTTCGCCGAGAACGTCGCCGCCTCTGCCGCCGCCTGCGTTGCCGCCTTCCTCTCGTACCATCTCGCC AAGCTGGTCCCGTACTGGGGTCTCGCCATCATCGCCACCACGATCGCCTTCTTCGCCCCCCTCGTCTACACGTCG AACCAGGAGCTCATTGACCACCACATCAAGAATGCCTCCGACGTCATCAGCGCCCAGACGGCCCAGGTCCGAACT GCCGCCCAGAAGCAGGCCGGCCAGCTCACCACCATGGGCAAGCAGTACGCTGGCGACTACACCGGCAAGGTCCAG GAGATGATCCGCGGCCGCAGCGCTTCCCCCGAGGCCGCGACCAAGCCGGCACCCTCCCACAAGGGCCTCGAGTTT CCCACCCCCCCGACCGAGGAGCCGAAGAAGGTGGTGGAGCCCCAGGGCCCGATTCCCGTGGACCCCGTTGAGCCC GTTGTGCCTGAGCAGGAGCCCATGATTGCTTCCTAG |
| Gene | >Hirsu2|7812 ATGTCTGACGCCCTCGATACGGCCCCGACGGCCAATGGTGGCGGTGCTTTCGAGGCCGCCAAGGCCAGTGAGGTA AGCTCCAGCCCTTGATCATATTTTTTTTTATTCGTCCCATCTTCTCTTTGGACGAGGCCAAGCTCGCTAACTGTT GGACCAGTTTGCCCATCGTGCTTCCCTTGATTCGTGCCCGACCCTGGCGAAGAGCTCACAAATTTTCTACCAGAC GCCGCCTCTGCCTACGATGCCGTGACCAACGGTGAGCCCTGCCATCCCTCCCCCTTTCTGCCAGCTGTGACTGAC TCTGCCTGCCTCTCTGCTTTCTTCAGGCCCCGTTGCGCAAAACGTCAAGGACCACTCCGCCAAGGCATCGTCCGA GCTGTCCACCCTGGCAGCTTCCCGCAAGACGCCGTCCAACCCGGCCGCCACCGGACAGCCTCTGACACACTATCA CTCCTTTTTCTCGGAGCTCTTGTCGTGGAACAATCCCCGTGCGTCTACTGTCTCGTCCCTCCCCGACCTCTTGTG CTTCGCTCGGATGCTGACCGCGGCGGCATCGCCAGGCGCCTCCGCCATCGCTTATGCCTCCGCCATCACCTTCAT CTTCGCGGCTAGGTACCTCGACGTGGTCCGTTGGGCGTTTAAGCTGTGCTGGATGGCGCTCGCCGTCACCGTCAG CGCCGAGGCTGCCGGCAAGGTCGTCTTGAACCACGGGCTTGCCACGCAGATGCGGCCCCGTCGATACTACACCAT CTCGCGGTCGACTCTGGACAACATGATCGGCGATGTCCACGAGCTGGCCAACTTCTTCGTCATCGAGGCTCAGCG CATCCTCTTCGCCGAGAACGTCGCCGCCTCTGCCGCCGTAAGATGGGCCTTGGCACTACACCGCACTGGCGTGGC GTCGGCTGGCTAACGGACGTTGCAGGCCTGCGTTGCCGCCTTCCTCTCGTACCATCTCGCCAAGCTGGTCCCGTA CTGGGGTCTCGCCATCATCGCCACCACGATCGCCTTCTTCGCCCCCCTCGTCTACACGTCGAACCAGGAGCTCAT TGACCACCACATCAAGAATGCCTCCGACGTCATCAGCGCCCAGACGGCCCAGGTCCGAACTGCCGCCCAGAAGCA GGCCGGCCAGCTCACCACCATGGGCAAGCAGTACGCTGGCGACTACACCGGCAAGGTCCAGGAGATGATCCGCGG CCGCAGCGCTTCCCCCGAGGCCGCGACCAAGCCGGCACCCTCCCACAAGGGCCTCGAGTTTCCCACCCCCCCGAC CGAGGAGCCGAAGAAGGTGGTGGAGCCCCAGGGCCCGATTCCCGTGGACCCCGTTGAGCCCGTTGTGCCTGAGCA GGAGCCCATGATTGCTTCCTAG |