Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|7805
Gene name
LocationContig_476:5379..6140
Strand-
Gene length (bp)761
Transcript length (bp)510
Coding sequence length (bp)510
Protein length (aa) 170

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05856 ARPC4 ARP2/3 complex 20 kDa subunit (ARPC4) 6.5E-79 1 166

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P33204|ARPC4_YEAST Actin-related protein 2/3 complex subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARC19 PE=1 SV=2 1 168 3.0E-83
sp|P59999|ARPC4_MOUSE Actin-related protein 2/3 complex subunit 4 OS=Mus musculus GN=Arpc4 PE=1 SV=3 1 168 4.0E-82
sp|P59998|ARPC4_HUMAN Actin-related protein 2/3 complex subunit 4 OS=Homo sapiens GN=ARPC4 PE=1 SV=3 1 168 4.0E-82
sp|Q148J6|ARPC4_BOVIN Actin-related protein 2/3 complex subunit 4 OS=Bos taurus GN=ARPC4 PE=1 SV=3 1 168 4.0E-82
sp|Q92352|ARPC4_SCHPO Actin-related protein 2/3 complex subunit 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arc4 PE=1 SV=1 1 168 3.0E-81
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Swissprot ID Swissprot Description Start End E-value
sp|P33204|ARPC4_YEAST Actin-related protein 2/3 complex subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARC19 PE=1 SV=2 1 168 3.0E-83
sp|P59999|ARPC4_MOUSE Actin-related protein 2/3 complex subunit 4 OS=Mus musculus GN=Arpc4 PE=1 SV=3 1 168 4.0E-82
sp|P59998|ARPC4_HUMAN Actin-related protein 2/3 complex subunit 4 OS=Homo sapiens GN=ARPC4 PE=1 SV=3 1 168 4.0E-82
sp|Q148J6|ARPC4_BOVIN Actin-related protein 2/3 complex subunit 4 OS=Bos taurus GN=ARPC4 PE=1 SV=3 1 168 4.0E-82
sp|Q92352|ARPC4_SCHPO Actin-related protein 2/3 complex subunit 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arc4 PE=1 SV=1 1 168 3.0E-81
sp|P58798|ARPC4_CAEEL Probable actin-related protein 2/3 complex subunit 4 OS=Caenorhabditis elegans GN=arx-6 PE=3 SV=1 1 169 3.0E-79
sp|O96625|ARPC4_DICDI Actin-related protein 2/3 complex subunit 4 OS=Dictyostelium discoideum GN=arcD PE=1 SV=1 1 168 9.0E-79
sp|F4JUL9|ARPC4_ARATH Actin-related protein 2/3 complex subunit 4 OS=Arabidopsis thaliana GN=ARPC4 PE=1 SV=1 1 168 9.0E-73
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GO

GO Term Description Terminal node
GO:0034314 Arp2/3 complex-mediated actin nucleation Yes
GO:0005885 Arp2/3 protein complex Yes
GO:0030041 actin filament polymerization Yes
GO:0015629 actin cytoskeleton Yes
GO:0048518 positive regulation of biological process No
GO:0051493 regulation of cytoskeleton organization No
GO:0005856 cytoskeleton No
GO:0065007 biological regulation No
GO:0030832 regulation of actin filament length No
GO:0032956 regulation of actin cytoskeleton organization No
GO:0010638 positive regulation of organelle organization No
GO:0030838 positive regulation of actin filament polymerization No
GO:0034622 cellular protein-containing complex assembly No
GO:0065003 protein-containing complex assembly No
GO:0050794 regulation of cellular process No
GO:0043232 intracellular non-membrane-bounded organelle No
GO:0007015 actin filament organization No
GO:0043229 intracellular organelle No
GO:0008154 actin polymerization or depolymerization No
GO:0008150 biological_process No
GO:1902903 regulation of supramolecular fiber organization No
GO:0033043 regulation of organelle organization No
GO:0045010 actin nucleation No
GO:0110053 regulation of actin filament organization No
GO:0043226 organelle No
GO:0044422 organelle part No
GO:0044089 positive regulation of cellular component biogenesis No
GO:0032970 regulation of actin filament-based process No
GO:0097435 supramolecular fiber organization No
GO:0048522 positive regulation of cellular process No
GO:0071840 cellular component organization or biogenesis No
GO:0044446 intracellular organelle part No
GO:0005575 cellular_component No
GO:0009987 cellular process No
GO:0008064 regulation of actin polymerization or depolymerization No
GO:0051128 regulation of cellular component organization No
GO:0031334 positive regulation of protein complex assembly No
GO:0044430 cytoskeletal part No
GO:0032991 protein-containing complex No
GO:0051495 positive regulation of cytoskeleton organization No
GO:0043933 protein-containing complex subunit organization No
GO:0043254 regulation of protein complex assembly No
GO:0044424 intracellular part No
GO:0016043 cellular component organization No
GO:0032535 regulation of cellular component size No
GO:1902905 positive regulation of supramolecular fiber organization No
GO:0032273 positive regulation of protein polymerization No
GO:0051130 positive regulation of cellular component organization No
GO:0050789 regulation of biological process No
GO:0044464 cell part No
GO:0044087 regulation of cellular component biogenesis No
GO:0022607 cellular component assembly No
GO:0043228 non-membrane-bounded organelle No
GO:0065008 regulation of biological quality No
GO:0090066 regulation of anatomical structure size No
GO:0030833 regulation of actin filament polymerization No
GO:0032271 regulation of protein polymerization No
GO:0051258 protein polymerization No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 31 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|7805
MSQSLRPYLQCVRSSLTAALTLSNFASQTAERHNVPEIEAQTSPEVLLTPLTVARNENERVLIEPSINSIRISIK
IKQADEIEHILVHKFTRFLKQRAESFFILRRKPIKGYDISFLITNFHTDEMLKHKLVDFIIQFMEDVDKEISEMK
LFLNSRARFVAESFLTPFD*
Coding >Hirsu2|7805
ATGTCTCAATCACTGCGGCCGTACCTGCAGTGCGTCCGAAGCAGCCTGACGGCCGCCCTTACTCTGTCCAACTTC
GCCTCGCAGACGGCCGAGCGACACAACGTGCCCGAGATCGAGGCCCAGACGTCACCCGAAGTCCTCCTGACGCCC
CTGACCGTCGCGCGTAACGAGAACGAGCGCGTCCTGATCGAGCCCAGCATCAACTCGATCCGCATCAGCATCAAG
ATCAAGCAGGCCGACGAGATCGAGCACATACTTGTCCACAAATTCACCCGCTTCCTGAAACAACGAGCCGAATCC
TTCTTCATCCTGCGGCGGAAGCCGATCAAGGGCTATGACATTTCCTTCTTAATAACCAATTTCCACACCGATGAA
ATGCTCAAGCATAAGCTCGTCGACTTCATCATCCAATTCATGGAAGACGTCGACAAGGAAATCTCCGAAATGAAA
CTCTTCCTGAACTCAAGAGCGAGATTCGTGGCCGAATCTTTTCTGACACCGTTTGACTGA
Transcript >Hirsu2|7805
ATGTCTCAATCACTGCGGCCGTACCTGCAGTGCGTCCGAAGCAGCCTGACGGCCGCCCTTACTCTGTCCAACTTC
GCCTCGCAGACGGCCGAGCGACACAACGTGCCCGAGATCGAGGCCCAGACGTCACCCGAAGTCCTCCTGACGCCC
CTGACCGTCGCGCGTAACGAGAACGAGCGCGTCCTGATCGAGCCCAGCATCAACTCGATCCGCATCAGCATCAAG
ATCAAGCAGGCCGACGAGATCGAGCACATACTTGTCCACAAATTCACCCGCTTCCTGAAACAACGAGCCGAATCC
TTCTTCATCCTGCGGCGGAAGCCGATCAAGGGCTATGACATTTCCTTCTTAATAACCAATTTCCACACCGATGAA
ATGCTCAAGCATAAGCTCGTCGACTTCATCATCCAATTCATGGAAGACGTCGACAAGGAAATCTCCGAAATGAAA
CTCTTCCTGAACTCAAGAGCGAGATTCGTGGCCGAATCTTTTCTGACACCGTTTGACTGA
Gene >Hirsu2|7805
ATGGTGAGTCTCCTCACCTCGCCGCAGGTCTCGAGTCACTGCGCGGCCGTTCTGACTCAGCCGCGACAGTCTCAA
TCACTGCGGCCGTACCTGCAGTGCGTCCGAAGCAGCCTGACGGCCGCCCTTACTCTGTCCAACTTCGCCTCGCAG
ACGGCCGAGCGACACAACGTGCCCGAGATCGAGGCCCAGACGTCACCCGAAGTCCTCCTGACGCCCCTGACCGTC
GCGCGTAACGAGAACGAGCGCGTCCTGATCGAGCCCAGCATCAACTCGATCCGCATCAGCATCAAGATCAAGCAG
GCCGACGAGATCGAGCACATACTTGTCCACAAATTCACCCGCTTCCTGAAACAACGAGCCGAATCCTTCTTCATC
CTGCGGCGGAAGCCGATCAAGGTCGAACGGGGCCCCTCCTTCCCCGTGACCTCGGAGACAGGACACGAGGCTGAC
TGCTTCCAGGGCTATGACATTTCCTTCTTAATAACCAATTTCCACACCGATGAAATGCTCAAGCATAAGCTCGTC
GACTTCATCATCCAATTCATGGAAGACGTCGACAAGGAAATCTCCGAAATGAAACTCTTCGTACGTCATTCTCAA
CCTTGCCAGGTCATCGGAGCACTGACAAGCAGCAGCTGAACTCAAGAGCGAGATTCGTGGCCGAATCTTTTCTGA
CACCGGTTCGCCCATTCCAATCCCATTGTATTACGAATTTGGTACCGATGCAAGAAGCTAACATGCCGTGACTAT
AGTTTGACTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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