Protein ID | Hirsu2|7761 |
Gene name | |
Location | Contig_47:50438..51992 |
Strand | + |
Gene length (bp) | 1554 |
Transcript length (bp) | 1386 |
Coding sequence length (bp) | 1386 |
Protein length (aa) | 462 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF05730 | CFEM | CFEM domain | 1.4E-06 | 30 | 94 |
PF05730 | CFEM | CFEM domain | 4.9E-09 | 234 | 300 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.1066 | 0.1002 | 0.9327 | 0.2028 | 0.0664 | 0.0042 | 0.1392 | 0.1709 | 0.1366 | 0.0019 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 21 | 0.99974 |
Orthofinder run ID | 4 |
Orthogroup | 3897 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|7761 MRSSVGAVSLLALARLGVTHGDAPCLSLTSKIPDCALSCVKSAASAVGCTDPSDLSCQCEPASKEAILVTAQGCV MGCGMDQVLAAIDGGSAICDCVATATPPSVPVFTSAEPVYTTPPTLPSETSTPTQHTDSSAPPKETSKLPPYANT TAPTTQSFQPPAQSSAPPDSTQTQSTVRVVSSASPDRPPTSCLSEGSGESTATSEGPVTSSLVGGTTTAPCVPGS KSDCGAIATSAVPKCAQECFSSNVPKVGCDVTDYACQCQPAAQQSLSSFLVPCVATACPQAAIPSVIAGASQVCA CATAPPSGGDCTATEGTDKTIVKTETLIATVTSCATGTQEPPKPTEGKPCLPGDDCGQHSTTTVVEPPASRPTES EKPGSEHSTGGHSVGPEPSCSTPGDVAPQPSCGNHSSCGGGGGGGGQQTGGHSEHPQPSASPTGGNPVVPKRGAP ASAEHRPQGRK* |
Coding | >Hirsu2|7761 ATGAGAAGTTCGGTTGGTGCGGTGAGCCTGTTGGCTCTCGCCCGCCTCGGTGTCACCCACGGCGATGCGCCTTGC TTGAGCCTCACGTCCAAGATCCCTGACTGCGCTCTGTCTTGTGTCAAGTCGGCCGCGTCGGCGGTTGGTTGCACC GACCCCAGCGACCTGAGCTGCCAATGTGAACCCGCCAGCAAAGAGGCGATCCTGGTCACCGCCCAAGGCTGTGTC ATGGGATGCGGCATGGACCAGGTCCTCGCGGCCATCGACGGCGGGTCGGCCATCTGTGACTGCGTCGCCACGGCG ACTCCTCCGTCGGTCCCGGTGTTCACCAGTGCTGAGCCTGTCTACACGACTCCGCCGACACTTCCATCGGAGACG TCTACGCCGACACAGCACACAGATTCCTCGGCGCCACCAAAGGAGACATCCAAGCTGCCGCCGTACGCCAACACG ACGGCGCCGACAACGCAGTCGTTTCAACCGCCAGCCCAGAGCAGTGCCCCCCCTGACAGCACCCAGACGCAGAGT ACCGTCCGCGTCGTTAGCAGCGCTTCCCCGGACAGGCCCCCGACGTCGTGCCTCAGCGAGGGCTCCGGCGAATCC ACCGCCACCTCCGAGGGACCCGTGACATCGTCGCTGGTGGGGGGCACGACGACCGCGCCTTGCGTACCCGGTTCC AAGTCGGATTGCGGAGCCATCGCGACGAGCGCCGTGCCCAAGTGCGCCCAGGAGTGCTTCAGCTCCAACGTCCCC AAGGTTGGCTGCGACGTGACAGACTATGCCTGCCAGTGTCAGCCGGCCGCGCAGCAGAGCCTGTCAAGTTTCCTC GTCCCCTGCGTCGCGACGGCCTGCCCGCAGGCCGCCATCCCGTCCGTCATCGCCGGCGCGAGCCAGGTGTGCGCC TGCGCCACGGCACCTCCGTCCGGCGGCGACTGCACCGCTACGGAGGGCACCGACAAGACTATTGTCAAGACCGAG ACCCTGATCGCTACCGTGACGTCGTGCGCGACGGGGACGCAGGAACCCCCGAAGCCCACGGAGGGAAAGCCGTGT CTGCCCGGCGACGACTGCGGACAGCACTCGACCACTACCGTCGTAGAGCCTCCCGCCAGCCGGCCGACCGAGAGC GAGAAGCCCGGCAGCGAGCATTCGACCGGCGGCCACAGCGTCGGGCCGGAGCCGTCCTGCAGCACACCGGGCGAC GTTGCACCCCAGCCCTCGTGCGGCAATCACTCGAGCTGCGGAGGAGGCGGCGGCGGCGGCGGCCAGCAGACCGGC GGCCACAGCGAGCACCCTCAGCCCTCCGCATCGCCCACGGGCGGCAACCCCGTCGTGCCGAAGCGAGGTGCCCCG GCCTCCGCAGAGCACCGGCCCCAAGGGCGGAAATAG |
Transcript | >Hirsu2|7761 ATGAGAAGTTCGGTTGGTGCGGTGAGCCTGTTGGCTCTCGCCCGCCTCGGTGTCACCCACGGCGATGCGCCTTGC TTGAGCCTCACGTCCAAGATCCCTGACTGCGCTCTGTCTTGTGTCAAGTCGGCCGCGTCGGCGGTTGGTTGCACC GACCCCAGCGACCTGAGCTGCCAATGTGAACCCGCCAGCAAAGAGGCGATCCTGGTCACCGCCCAAGGCTGTGTC ATGGGATGCGGCATGGACCAGGTCCTCGCGGCCATCGACGGCGGGTCGGCCATCTGTGACTGCGTCGCCACGGCG ACTCCTCCGTCGGTCCCGGTGTTCACCAGTGCTGAGCCTGTCTACACGACTCCGCCGACACTTCCATCGGAGACG TCTACGCCGACACAGCACACAGATTCCTCGGCGCCACCAAAGGAGACATCCAAGCTGCCGCCGTACGCCAACACG ACGGCGCCGACAACGCAGTCGTTTCAACCGCCAGCCCAGAGCAGTGCCCCCCCTGACAGCACCCAGACGCAGAGT ACCGTCCGCGTCGTTAGCAGCGCTTCCCCGGACAGGCCCCCGACGTCGTGCCTCAGCGAGGGCTCCGGCGAATCC ACCGCCACCTCCGAGGGACCCGTGACATCGTCGCTGGTGGGGGGCACGACGACCGCGCCTTGCGTACCCGGTTCC AAGTCGGATTGCGGAGCCATCGCGACGAGCGCCGTGCCCAAGTGCGCCCAGGAGTGCTTCAGCTCCAACGTCCCC AAGGTTGGCTGCGACGTGACAGACTATGCCTGCCAGTGTCAGCCGGCCGCGCAGCAGAGCCTGTCAAGTTTCCTC GTCCCCTGCGTCGCGACGGCCTGCCCGCAGGCCGCCATCCCGTCCGTCATCGCCGGCGCGAGCCAGGTGTGCGCC TGCGCCACGGCACCTCCGTCCGGCGGCGACTGCACCGCTACGGAGGGCACCGACAAGACTATTGTCAAGACCGAG ACCCTGATCGCTACCGTGACGTCGTGCGCGACGGGGACGCAGGAACCCCCGAAGCCCACGGAGGGAAAGCCGTGT CTGCCCGGCGACGACTGCGGACAGCACTCGACCACTACCGTCGTAGAGCCTCCCGCCAGCCGGCCGACCGAGAGC GAGAAGCCCGGCAGCGAGCATTCGACCGGCGGCCACAGCGTCGGGCCGGAGCCGTCCTGCAGCACACCGGGCGAC GTTGCACCCCAGCCCTCGTGCGGCAATCACTCGAGCTGCGGAGGAGGCGGCGGCGGCGGCGGCCAGCAGACCGGC GGCCACAGCGAGCACCCTCAGCCCTCCGCATCGCCCACGGGCGGCAACCCCGTCGTGCCGAAGCGAGGTGCCCCG GCCTCCGCAGAGCACCGGCCCCAAGGGCGGAAATAG |
Gene | >Hirsu2|7761 ATGAGAAGTTCGGTTGGTGCGGTGAGCCTGTTGGCTCTCGCCCGCCTCGGTGTCACCCACGGCGATGCGCCTTGC TTGAGCCTCACGTCCAAGATCCCTGACTGCGCTGTGAGTCAACCTGGACGTAACCGTGGTGAGCGGCATGCTGAT TCTTCCCAGCTGTCTTGTGTCAAGTCGGCCGCGTCGGCGGTTGGTTGCACCGACCCCAGCGACCTGAGCTGTAAG ACACCCTCATCGCACAAGGAGCACCAGCAACCTGCTCACCGTCCCAGGCCAATGTGAACCCGCCAGCAAAGAGGC GATCCTGGTCACCGCCCAAGGCTGTGTCATGGGATGCGGCATGGACCAGGTCCTCGCGGCCATCGACGGCGGGTC GGCCATCTGTGACTGCGTCGCCACGGCGACTCCTCCGTCGGTCCCGGTGTTCACCAGTGCTGAGCCTGTCTACAC GACTCCGCCGACACTTCCATCGGAGACGTCTACGCCGACACAGCACACAGATTCCTCGGCGCCACCAAAGGAGAC ATCCAAGCTGCCGCCGTACGCCAACACGACGGCGCCGACAACGCAGTCGTTTCAACCGCCAGCCCAGAGCAGTGC CCCCCCTGACAGCACCCAGACGCAGAGTACCGTCCGCGTCGTTAGCAGCGCTTCCCCGGACAGGCCCCCGACGTC GTGCCTCAGCGAGGGCTCCGGCGAATCCACCGCCACCTCCGAGGGACCCGTGACATCGTCGCTGGTGGGGGGCAC GACGACCGCGCCTTGCGTACCCGGTTCCAAGTCGGATTGCGGAGCCATCGCGACGAGCGCCGTGCCCAAGTGCGC CCAGGAGTGCTTCAGCTCCAACGTCCCCAAGGTTGGCTGCGACGTGACAGACTATGCCTGCCAGTGTCAGCCGGC CGCGCAGCAGAGCCTGTCAAGTTTCCTCGTCCCCTGCGTCGCGACGGCCTGCCCGCAGGCCGCCATCCCGTCCGT CATCGCCGGCGCGAGCCAGGTGTGCGCCTGCGCCACGGCACCTCCGTCCGGCGGCGACTGCACCGCTACGGAGGG CACCGACAAGACTATTGTCAAGACCGAGACCCTGATCGCTACCGTGACGTCGTGCGCGACGGGGACGCAGGAACC CCCGAAGCCCACGGAGGGAAAGCCGTGTCTGCCCGGCGACGACTGCGGACAGCACTCGACCACTACCGTCGTAGA GCCTCCCGCCAGCCGGCCGACCGAGAGCGAGAAGCCCGGCAGCGAGCATTCGACCGGCGGCCACAGCGTCGGGCC GGAGCCGTCCTGCAGCACACCGGGCGACGTTGCACCCCAGCCCTCGTGCGGCAATCACTCGAGCTGCGGAGGAGG CGGCGGCGGCGGCGGCCAGCAGACCGGCGGCCACAGCGAGCACCCTCAGCCCTCCGCATCGCCCACGGGCGGCAA CCCCGTCGTGCCGAAGGTGACCGAGAGCTGCAGTACAGTCCCGCTGCCGCCGTGCACCGGGAATCCCGACTGCGG CCGCAGCGAGGTGCCCCGGCCTCCGCAGAGCACCGGCCCCAAGGGCGGAAATAG |