Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|774
Gene name
LocationContig_116:391..1961
Strand-
Gene length (bp)1570
Transcript length (bp)1509
Coding sequence length (bp)1509
Protein length (aa) 503

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13691 Lactamase_B_4 tRNase Z endonuclease 8.6E-22 8 68

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P36159|RNZ_YEAST Ribonuclease Z OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRZ1 PE=1 SV=1 315 474 3.0E-09
sp|P36159|RNZ_YEAST Ribonuclease Z OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRZ1 PE=1 SV=1 9 77 4.0E-07
sp|Q10155|RNZ1_SCHPO Ribonuclease Z 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trz1 PE=3 SV=1 318 470 2.0E-06

GO

GO Term Description Terminal node
GO:0008033 tRNA processing Yes
GO:0046483 heterocycle metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0034660 ncRNA metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0006399 tRNA metabolic process No
GO:0071704 organic substance metabolic process No
GO:0044238 primary metabolic process No
GO:0016070 RNA metabolic process No
GO:0008152 metabolic process No
GO:0006396 RNA processing No
GO:0043170 macromolecule metabolic process No
GO:0044237 cellular metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0008150 biological_process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0034470 ncRNA processing No
GO:0009987 cellular process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|774
MTTTIELATVPSADTPGTCLYVHHDKHSYLFGHVPEGTQRALNSRKIRFGGTEHVFLSGPVGWDQMGGLMGYLLS
IGAAIESAEASAADMNDLRREAGRKLVEKMQHSGVCVHGGDNICHMLAACRPVIMRQAVRVRACELRADPRAAAP
AADDATLEPDWKDDAIRVWKIPVRKARSSSPPKRPHSSIDDADDGGGGGGGGSGGPAAEASSPPHRAALSDPDVA
AMIIEKCMFNGKLKSGFFLQPRKVGELAPAQAALVKENGVLRLYRHGQDSLSPESNVFVFPGPDDKAAEDKRSGS
LPINHHALPPTCYGQTSVSYVVKCHDRRGTFKPDEATRLGVTKRYYRDLIAGKSVQGADGKTVLPEMVMGAPKPG
KGFVVADIPGPDYVDGFMERAEWKNAGLMENIVSFYWILGPGLSHDARIHAFIKQHGGARHVFCAQDTCPNMIVH
PGAADLQVRLRQIDPERYPVARYDNSVRYPQPPPESPIVLGRAGEKMQLMPR*
Coding >Hirsu2|774
ATGACGACGACGATCGAGCTCGCGACGGTCCCGTCGGCCGACACGCCGGGCACCTGCCTTTACGTCCACCACGAC
AAGCACTCGTACCTCTTCGGCCATGTCCCCGAGGGCACCCAGCGCGCCCTCAACTCGCGCAAGATCCGCTTCGGC
GGCACCGAGCACGTCTTCCTGAGCGGGCCCGTCGGCTGGGACCAGATGGGAGGCCTGATGGGCTACCTGCTCAGC
ATCGGCGCCGCCATCGAGTCCGCCGAGGCCTCCGCCGCCGACATGAACGACCTCCGGAGGGAGGCCGGCAGGAAG
CTGGTCGAGAAGATGCAGCACAGCGGCGTCTGCGTCCACGGCGGCGACAACATCTGCCACATGCTGGCCGCCTGC
CGCCCCGTCATCATGCGTCAGGCCGTCCGCGTCCGCGCCTGCGAGCTTCGCGCCGATCCCAGGGCCGCCGCCCCC
GCCGCCGACGATGCCACGTTGGAGCCCGACTGGAAGGACGACGCCATAAGAGTGTGGAAGATTCCCGTCCGCAAG
GCCCGCTCCAGCAGCCCGCCAAAGCGCCCGCACAGCAGCATCGATGATGCGGACGACGGCGGTGGCGGCGGCGGC
GGCGGCAGCGGCGGCCCGGCAGCCGAAGCGTCGTCGCCCCCGCACAGGGCCGCCCTCTCGGACCCCGACGTCGCC
GCCATGATCATCGAAAAATGCATGTTCAACGGCAAGCTCAAGAGCGGCTTCTTCCTGCAACCCCGCAAGGTCGGC
GAGCTCGCGCCCGCGCAGGCGGCCCTCGTCAAGGAAAACGGCGTGCTGAGGCTCTACCGGCACGGCCAAGACAGC
CTGTCCCCGGAAAGCAACGTCTTCGTCTTTCCAGGCCCCGACGACAAGGCGGCCGAGGACAAGCGGAGCGGCAGC
CTGCCCATCAACCACCACGCACTGCCGCCGACGTGCTACGGCCAGACGTCGGTGTCGTACGTCGTCAAGTGCCAC
GACCGCAGGGGCACGTTCAAGCCCGACGAGGCCACCAGGCTGGGCGTCACCAAGAGATATTACCGGGACCTCATC
GCGGGCAAGAGCGTGCAGGGCGCGGACGGGAAGACGGTGCTGCCGGAGATGGTCATGGGCGCGCCCAAGCCCGGC
AAGGGCTTCGTCGTCGCCGACATCCCCGGGCCCGACTACGTGGACGGCTTCATGGAGCGGGCCGAGTGGAAGAAC
GCGGGGCTGATGGAGAACATTGTGTCCTTCTACTGGATCCTGGGCCCCGGCCTCTCGCACGACGCGCGGATCCAC
GCCTTCATCAAGCAGCACGGCGGGGCCAGGCACGTCTTCTGCGCGCAGGACACGTGCCCCAACATGATCGTCCAC
CCCGGCGCGGCCGACCTCCAGGTCCGGCTCCGGCAGATCGACCCGGAGCGGTACCCGGTGGCCAGGTACGACAAC
AGCGTGCGGTACCCGCAGCCGCCGCCCGAGTCGCCCATCGTGCTGGGCCGGGCGGGCGAGAAGATGCAGCTGATG
CCGCGCTGA
Transcript >Hirsu2|774
ATGACGACGACGATCGAGCTCGCGACGGTCCCGTCGGCCGACACGCCGGGCACCTGCCTTTACGTCCACCACGAC
AAGCACTCGTACCTCTTCGGCCATGTCCCCGAGGGCACCCAGCGCGCCCTCAACTCGCGCAAGATCCGCTTCGGC
GGCACCGAGCACGTCTTCCTGAGCGGGCCCGTCGGCTGGGACCAGATGGGAGGCCTGATGGGCTACCTGCTCAGC
ATCGGCGCCGCCATCGAGTCCGCCGAGGCCTCCGCCGCCGACATGAACGACCTCCGGAGGGAGGCCGGCAGGAAG
CTGGTCGAGAAGATGCAGCACAGCGGCGTCTGCGTCCACGGCGGCGACAACATCTGCCACATGCTGGCCGCCTGC
CGCCCCGTCATCATGCGTCAGGCCGTCCGCGTCCGCGCCTGCGAGCTTCGCGCCGATCCCAGGGCCGCCGCCCCC
GCCGCCGACGATGCCACGTTGGAGCCCGACTGGAAGGACGACGCCATAAGAGTGTGGAAGATTCCCGTCCGCAAG
GCCCGCTCCAGCAGCCCGCCAAAGCGCCCGCACAGCAGCATCGATGATGCGGACGACGGCGGTGGCGGCGGCGGC
GGCGGCAGCGGCGGCCCGGCAGCCGAAGCGTCGTCGCCCCCGCACAGGGCCGCCCTCTCGGACCCCGACGTCGCC
GCCATGATCATCGAAAAATGCATGTTCAACGGCAAGCTCAAGAGCGGCTTCTTCCTGCAACCCCGCAAGGTCGGC
GAGCTCGCGCCCGCGCAGGCGGCCCTCGTCAAGGAAAACGGCGTGCTGAGGCTCTACCGGCACGGCCAAGACAGC
CTGTCCCCGGAAAGCAACGTCTTCGTCTTTCCAGGCCCCGACGACAAGGCGGCCGAGGACAAGCGGAGCGGCAGC
CTGCCCATCAACCACCACGCACTGCCGCCGACGTGCTACGGCCAGACGTCGGTGTCGTACGTCGTCAAGTGCCAC
GACCGCAGGGGCACGTTCAAGCCCGACGAGGCCACCAGGCTGGGCGTCACCAAGAGATATTACCGGGACCTCATC
GCGGGCAAGAGCGTGCAGGGCGCGGACGGGAAGACGGTGCTGCCGGAGATGGTCATGGGCGCGCCCAAGCCCGGC
AAGGGCTTCGTCGTCGCCGACATCCCCGGGCCCGACTACGTGGACGGCTTCATGGAGCGGGCCGAGTGGAAGAAC
GCGGGGCTGATGGAGAACATTGTGTCCTTCTACTGGATCCTGGGCCCCGGCCTCTCGCACGACGCGCGGATCCAC
GCCTTCATCAAGCAGCACGGCGGGGCCAGGCACGTCTTCTGCGCGCAGGACACGTGCCCCAACATGATCGTCCAC
CCCGGCGCGGCCGACCTCCAGGTCCGGCTCCGGCAGATCGACCCGGAGCGGTACCCGGTGGCCAGGTACGACAAC
AGCGTGCGGTACCCGCAGCCGCCGCCCGAGTCGCCCATCGTGCTGGGCCGGGCGGGCGAGAAGATGCAGCTGATG
CCGCGCTGA
Gene >Hirsu2|774
ATGACGACGACGATCGAGCTCGCGACGGTCCCGTCGGCCGACACGCCGGGCACCTGCCTTTACGTCCACCACGAC
AAGCACTCGTACCTCTTCGGCCATGTCCCCGAGGGCACCCAGCGCGCCCTCAACTCGCGCAAGATCCGCTTCGGC
GGCACCGAGCACGTCTTCCTGAGCGGGCCCGTCGGCTGGGACCAGATGGGAGGCCTGATGGGCTACCTGCTCAGC
ATCGGCGCCGCCATCGAGTCCGCCGAGGCCTCCGCCGCCGACATGAACGACCTCCGGAGGGAGGCCGGCAGGAAG
CTGGTCGAGAAGATGCAGCACAGCGGCGTCTGCGTCCACGGCGGCGACAACATCTGCCACATGCTGGCCGCCTGC
CGCCCCGTCATCATGCGTCAGGCCGTCCGCGTCCGCGCCTGCGAGCTTCGCGCCGATCCCAGGGCCGCCGCCCCC
GCCGCCGACGATGCCACGTTGGAGCCCGACTGGAAGGACGACGCCATAAGAGTGTGGAAGATTCCCGTCCGCAAG
GCCCGCTCCAGCAGCCCGCCAAAGCGCCCGCACAGCAGCATCGATGATGCGGACGACGGCGGTGGCGGCGGCGGC
GGCGGCAGCGGCGGCCCGGCAGCCGAAGCGTCGTCGCCCCCGCACAGGGCCGCCCTCTCGGACCCCGACGTCGCC
GCCATGATCATCGAAAAATGCATGTTCAACGGCAAGCTCAAGAGCGGCTTCTTCCTGCAACCCCGCAAGGTCGGC
GAGCTCGCGCCCGCGCAGGCGGCCCTCGTCAAGGAAAACGGCGTGCTGAGGCTCTACCGGCACGGCCAAGACAGC
CTGTCCCCGGAAAGCAACGTCTTCGTCTTTCCAGGCCCCGACGACAAGGCGGCCGAGGACAAGCGGAGCGGCAGC
CTGCCCATCAACCACCACGCACTGCCGCCGACGTGCTACGGCCAGACGTCGGTGTCGTACGTCGTCAAGTGCCAC
GACCGCAGGGGCACGTTCAAGCCCGACGAGGCCACCAGGCTGGGCGTCACCAAGAGATATTACCGGGACCTCATC
GCGGGCAAGAGCGTGCAGGGCGCGGACGGGAAGACGGTGCTGCCGGAGATGGTCATGGGCGCGCCCAAGCCCGGC
AAGGGCTTCGTCGTCGCCGACATCCCCGGGCCCGACTACGTGGACGGCTTCATGGAGCGGGCCGAGTGGAAGAAC
GCGGGGCTGATGGAGAACATTGTGTCCTTCTACTGGATCCTGGGCCCCGGCCTCTCGCACGACGCGCGGATCCAC
GCCTTCATCAAGCAGCACGGCGGGGCCAGGCACGTCTTCTGCGCGCAGGACACGTGCCCCAACATGATCGTCCAC
CCCGGCGCGGCCGACCTCCAGGTCCGGCTCCGGCAGATCGACCCGGAGCGGTACCCGGTGGCCAGGTACGACAAC
AGCGTGCGGTACCCGCAGCCGCCGCCCGAGTCGCCCATCGTGCTGGGCCGGGCGGGCGAGAAGATGCAGCTGATG
CCGTCGGTCCAGATGGACGGCCGGGGCCCGACGCCCTTCACGGACCTGGCGGCGGCCGGGCAGGCGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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