© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|7700 |
| Gene name | |
| Location | Contig_462:7975..9632 |
| Strand | + |
| Gene length (bp) | 1657 |
| Transcript length (bp) | 1554 |
| Coding sequence length (bp) | 1554 |
| Protein length (aa) | 518 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01694 | Rhomboid | Rhomboid family | 4.5E-34 | 278 | 418 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|C8VCL5|Y0929_EMENI | Uncharacterized rhomboid protein AN10929 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=AN10929 PE=3 SV=1 | 168 | 513 | 1.0E-127 |
| sp|F4JBM4|RBL4_ARATH | RHOMBOID-like protein 4 OS=Arabidopsis thaliana GN=RBL4 PE=2 SV=1 | 271 | 507 | 2.0E-29 |
| sp|Q9LYP1|RBL3_ARATH | RHOMBOID-like protein 3 OS=Arabidopsis thaliana GN=RBL3 PE=2 SV=1 | 282 | 507 | 4.0E-29 |
| sp|Q6GMF8|RHDF1_DANRE | Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1 | 245 | 509 | 8.0E-27 |
| sp|Q0WQX7|RBL1_ARATH | RHOMBOID-like protein 1 OS=Arabidopsis thaliana GN=RBL1 PE=2 SV=1 | 271 | 515 | 7.0E-26 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|C8VCL5|Y0929_EMENI | Uncharacterized rhomboid protein AN10929 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=AN10929 PE=3 SV=1 | 168 | 513 | 1.0E-127 |
| sp|F4JBM4|RBL4_ARATH | RHOMBOID-like protein 4 OS=Arabidopsis thaliana GN=RBL4 PE=2 SV=1 | 271 | 507 | 2.0E-29 |
| sp|Q9LYP1|RBL3_ARATH | RHOMBOID-like protein 3 OS=Arabidopsis thaliana GN=RBL3 PE=2 SV=1 | 282 | 507 | 4.0E-29 |
| sp|Q6GMF8|RHDF1_DANRE | Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1 | 245 | 509 | 8.0E-27 |
| sp|Q0WQX7|RBL1_ARATH | RHOMBOID-like protein 1 OS=Arabidopsis thaliana GN=RBL1 PE=2 SV=1 | 271 | 515 | 7.0E-26 |
| sp|Q6PIX5|RHDF1_MOUSE | Inactive rhomboid protein 1 OS=Mus musculus GN=Rhbdf1 PE=1 SV=2 | 245 | 509 | 1.0E-25 |
| sp|Q8VZ48|RBL6_ARATH | RHOMBOID-like protein 6, mitochondrial OS=Arabidopsis thaliana GN=RBL6 PE=2 SV=1 | 271 | 507 | 3.0E-25 |
| sp|Q96CC6|RHDF1_HUMAN | Inactive rhomboid protein 1 OS=Homo sapiens GN=RHBDF1 PE=1 SV=2 | 245 | 509 | 4.0E-25 |
| sp|Q499S9|RHDF1_RAT | Inactive rhomboid protein 1 OS=Rattus norvegicus GN=Rhbdf1 PE=2 SV=1 | 245 | 509 | 4.0E-25 |
| sp|A9L8T6|RHDF1_PAPAN | Inactive rhomboid protein 1 OS=Papio anubis GN=RHBDF1 PE=3 SV=1 | 245 | 509 | 5.0E-25 |
| sp|B0VX73|RHDF1_CALJA | Inactive rhomboid protein 1 OS=Callithrix jacchus GN=RHBDF1 PE=3 SV=1 | 245 | 509 | 6.0E-25 |
| sp|B1MT31|RHDF1_CALMO | Inactive rhomboid protein 1 OS=Callicebus moloch GN=RHBDF1 PE=3 SV=1 | 245 | 509 | 8.0E-25 |
| sp|A7YWH9|RHDF1_BOVIN | Inactive rhomboid protein 1 OS=Bos taurus GN=RHBDF1 PE=2 SV=1 | 245 | 509 | 2.0E-24 |
| sp|Q9CAN1|RBL2_ARATH | RHOMBOID-like protein 2 OS=Arabidopsis thaliana GN=RBL2 PE=1 SV=1 | 278 | 507 | 1.0E-23 |
| sp|A0JPA1|RHDF2_XENTR | Inactive rhomboid protein 2 OS=Xenopus tropicalis GN=rhbdf2 PE=2 SV=1 | 245 | 515 | 4.0E-20 |
| sp|Q00M95|RHDF2_CANLF | Inactive rhomboid protein 2 OS=Canis lupus familiaris GN=RHBDF2 PE=2 SV=1 | 245 | 515 | 4.0E-20 |
| sp|Q80WQ6|RHDF2_MOUSE | Inactive rhomboid protein 2 OS=Mus musculus GN=Rhbdf2 PE=1 SV=1 | 245 | 515 | 1.0E-19 |
| sp|F4I8K2|RBL8_ARATH | RHOMBOID-like protein 8 OS=Arabidopsis thaliana GN=KOM PE=2 SV=1 | 139 | 507 | 4.0E-19 |
| sp|Q6PJF5|RHDF2_HUMAN | Inactive rhomboid protein 2 OS=Homo sapiens GN=RHBDF2 PE=1 SV=2 | 245 | 515 | 1.0E-18 |
| sp|Q9SSR0|RBL5_ARATH | RHOMBOID-like protein 5 OS=Arabidopsis thaliana GN=RBL5 PE=3 SV=1 | 280 | 420 | 2.0E-15 |
| sp|O82756|RBL7_ARATH | RHOMBOID-like protein 7 OS=Arabidopsis thaliana GN=RBL7 PE=3 SV=1 | 278 | 402 | 2.0E-13 |
| sp|P54493|GLUP_BACSU | Rhomboid protease GluP OS=Bacillus subtilis (strain 168) GN=gluP PE=1 SV=2 | 236 | 408 | 6.0E-12 |
| sp|Q76NQ1|RHDF1_DROME | Inactive rhomboid protein 1 OS=Drosophila melanogaster GN=rho-5 PE=2 SV=1 | 277 | 416 | 1.0E-11 |
| sp|P58872|RHBL3_HUMAN | Rhomboid-related protein 3 OS=Homo sapiens GN=RHBDL3 PE=2 SV=1 | 280 | 418 | 3.0E-11 |
| sp|O75783|RHBL1_HUMAN | Rhomboid-related protein 1 OS=Homo sapiens GN=RHBDL1 PE=2 SV=1 | 282 | 427 | 7.0E-11 |
| sp|Q6IUY1|RHBL3_TOXGO | Rhomboid-like protease 3 OS=Toxoplasma gondii GN=ROM3 PE=2 SV=1 | 280 | 414 | 1.0E-10 |
| sp|Q8VC82|RHBL1_MOUSE | Rhomboid-related protein 1 OS=Mus musculus GN=Rhbdl1 PE=2 SV=1 | 282 | 427 | 2.0E-10 |
| sp|P58873|RHBL3_MOUSE | Rhomboid-related protein 3 OS=Mus musculus GN=Rhbdl3 PE=2 SV=1 | 280 | 418 | 3.0E-10 |
| sp|Q695T8|RHBL4_TOXGO | Rhomboid-like protease 4 OS=Toxoplasma gondii GN=ROM4 PE=2 SV=1 | 279 | 437 | 5.0E-10 |
| sp|Q695T9|RHBL2_TOXGO | Rhomboid-like protease 2 OS=Toxoplasma gondii GN=ROM2 PE=2 SV=1 | 282 | 413 | 2.0E-09 |
| sp|P20350|RHOM_DROME | Protein rhomboid OS=Drosophila melanogaster GN=rho PE=1 SV=2 | 263 | 416 | 7.0E-09 |
| sp|P96617|YDCA_BACSU | Putative rhomboid protease YdcA OS=Bacillus subtilis (strain 168) GN=ydcA PE=3 SV=1 | 268 | 415 | 7.0E-09 |
| sp|O88779|RHBL1_RAT | Rhomboid-related protein 1 (Fragment) OS=Rattus norvegicus GN=Rhbdl1 PE=2 SV=1 | 289 | 427 | 2.0E-07 |
| sp|F4ICF4|RBL10_ARATH | RHOMBOID-like protein 10, chloroplastic OS=Arabidopsis thaliana GN=RBL10 PE=2 SV=1 | 271 | 411 | 3.0E-07 |
| sp|P46116|AARA_PROST | Rhomboid protease AarA OS=Providencia stuartii GN=aarA PE=1 SV=1 | 256 | 423 | 2.0E-06 |
| sp|Q695U0|RHBL1_TOXGO | Rhomboid-like protease 1 OS=Toxoplasma gondii GN=ROM1 PE=2 SV=1 | 280 | 413 | 3.0E-06 |
| sp|Q6GV23|RHBL5_TOXGO | Rhomboid-like protease 5 OS=Toxoplasma gondii GN=ROM5 PE=1 SV=1 | 171 | 439 | 8.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0004252 | serine-type endopeptidase activity | Yes |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0008233 | peptidase activity | No |
| GO:0017171 | serine hydrolase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0005575 | cellular_component | No |
| GO:0008236 | serine-type peptidase activity | No |
| GO:0004175 | endopeptidase activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0110165 | cellular anatomical entity | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum|Golgi apparatus | Signal peptide|Transmembrane domain | 0.0532 | 0.1562 | 0.0331 | 0.3094 | 0.0554 | 0.007 | 0.715 | 0.4268 | 0.6792 | 0.0108 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 170 | 188 | 18 |
| 2 | 281 | 303 | 22 |
| 3 | 316 | 338 | 22 |
| 4 | 342 | 364 | 22 |
| 5 | 377 | 396 | 19 |
| 6 | 461 | 483 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 3879 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|7700 MASHEHPHALNDPPPATYHGAHFAPSPQPTPAPSYHSAHQIPPPSHTPRLFGAPHDSPPRSTASPFDTVFDDPAY PHHQRAYAPGPPAAMPQQGLYQDTGYHGPGAAPAPSPHVTEDIPLREQPNKNSDLNDHVYDTLVSENERQRSRNR GKVRLGELGMFGANSKRIPWVVYLFTVVQVAVFIAEIIKNGILTGSPIMIKPQFNPMIGPSTQVMINMGARYVPC MHNVREIQGSQVPVLFLCPNATTNDNFCPLSDLCGFGGVPNPTFNDVNQSPAPNQWFRFITPIFMHAGLIHIGFN LLMQLTIAKEMEVAIGPIRFFIVYMSAGIFGFVLGGNFAAPALPSTGASGALFGVIALTLLDLFYSWKERKQPVK DLMFLLLDMVISFALGLLPGLDNFAHIGGFVMGLGLGICVLHSPNSLRRRMGSGTPYSAVFPGDGPTAASVFKGP LGFFKGRKPFWWFWWIVRAIVLIIVIVVFVVFINYFYTARDRCEWCKYLSCIPVSNWCEIGTIRQTH* |
| Coding | >Hirsu2|7700 ATGGCTTCCCACGAGCATCCCCACGCCCTCAACGACCCTCCACCCGCTACCTACCACGGCGCGCACTTCGCTCCG TCGCCCCAGCCGACGCCTGCGCCGTCCTATCACTCGGCCCACCAGATACCGCCGCCATCGCACACGCCACGACTC TTCGGCGCCCCCCACGACTCGCCTCCTCGATCCACCGCCTCTCCGTTCGACACCGTCTTCGACGATCCCGCCTAC CCTCACCACCAAAGGGCCTACGCCCCGGGCCCCCCTGCCGCCATGCCTCAGCAAGGCCTCTACCAAGACACGGGC TACCACGGCCCCGGCGCCGCGCCCGCCCCGAGTCCACACGTGACCGAGGACATCCCGCTGCGAGAACAGCCAAAC AAGAACAGCGACCTCAACGACCACGTATACGACACGCTCGTCTCCGAAAACGAAAGGCAGCGCTCGAGAAACCGG GGCAAGGTCCGGCTGGGAGAACTGGGCATGTTCGGCGCCAATAGCAAGAGGATCCCCTGGGTCGTCTACCTCTTC ACCGTCGTCCAGGTCGCCGTCTTCATCGCCGAAATCATCAAGAACGGCATCTTGACGGGCTCGCCCATCATGATC AAGCCTCAGTTCAACCCCATGATCGGCCCCTCCACCCAGGTCATGATCAACATGGGCGCCCGCTACGTTCCCTGC ATGCACAACGTTCGAGAGATCCAGGGCTCCCAGGTCCCCGTCCTCTTCCTCTGCCCCAACGCCACCACCAACGAC AACTTTTGTCCCCTCTCCGACCTCTGCGGCTTCGGCGGCGTTCCCAACCCGACCTTCAACGACGTGAACCAGAGT CCCGCCCCGAACCAGTGGTTTCGATTCATCACGCCCATCTTCATGCACGCCGGCCTCATCCACATCGGCTTCAAC CTCCTGATGCAGCTGACGATAGCCAAGGAGATGGAGGTGGCCATCGGCCCCATCCGCTTTTTCATCGTCTACATG AGCGCCGGCATCTTTGGCTTCGTCCTCGGTGGCAACTTTGCCGCCCCCGCCCTGCCCTCGACCGGCGCGTCGGGC GCCCTCTTCGGCGTCATCGCCCTCACCCTCCTCGACCTGTTTTACTCGTGGAAGGAGCGCAAGCAACCTGTCAAG GACTTGATGTTCCTCCTCCTCGACATGGTCATCTCCTTCGCCCTCGGTCTGCTGCCCGGCCTGGACAACTTCGCC CACATCGGCGGCTTCGTCATGGGACTCGGCCTCGGCATCTGCGTCCTCCACTCCCCCAACTCCCTCCGCAGACGC ATGGGCAGCGGCACCCCCTACTCGGCCGTCTTTCCGGGAGACGGCCCGACGGCCGCGTCCGTCTTCAAAGGCCCG CTCGGCTTCTTTAAGGGCCGGAAGCCGTTCTGGTGGTTCTGGTGGATTGTCAGGGCCATCGTCCTCATCATCGTC ATCGTCGTCTTCGTCGTCTTCATCAACTACTTCTACACGGCCCGAGACAGGTGCGAATGGTGCAAATACCTCAGC TGCATTCCCGTCAGTAATTGGTGCGAGATTGGGACGATTCGTCAAACGCACTGA |
| Transcript | >Hirsu2|7700 ATGGCTTCCCACGAGCATCCCCACGCCCTCAACGACCCTCCACCCGCTACCTACCACGGCGCGCACTTCGCTCCG TCGCCCCAGCCGACGCCTGCGCCGTCCTATCACTCGGCCCACCAGATACCGCCGCCATCGCACACGCCACGACTC TTCGGCGCCCCCCACGACTCGCCTCCTCGATCCACCGCCTCTCCGTTCGACACCGTCTTCGACGATCCCGCCTAC CCTCACCACCAAAGGGCCTACGCCCCGGGCCCCCCTGCCGCCATGCCTCAGCAAGGCCTCTACCAAGACACGGGC TACCACGGCCCCGGCGCCGCGCCCGCCCCGAGTCCACACGTGACCGAGGACATCCCGCTGCGAGAACAGCCAAAC AAGAACAGCGACCTCAACGACCACGTATACGACACGCTCGTCTCCGAAAACGAAAGGCAGCGCTCGAGAAACCGG GGCAAGGTCCGGCTGGGAGAACTGGGCATGTTCGGCGCCAATAGCAAGAGGATCCCCTGGGTCGTCTACCTCTTC ACCGTCGTCCAGGTCGCCGTCTTCATCGCCGAAATCATCAAGAACGGCATCTTGACGGGCTCGCCCATCATGATC AAGCCTCAGTTCAACCCCATGATCGGCCCCTCCACCCAGGTCATGATCAACATGGGCGCCCGCTACGTTCCCTGC ATGCACAACGTTCGAGAGATCCAGGGCTCCCAGGTCCCCGTCCTCTTCCTCTGCCCCAACGCCACCACCAACGAC AACTTTTGTCCCCTCTCCGACCTCTGCGGCTTCGGCGGCGTTCCCAACCCGACCTTCAACGACGTGAACCAGAGT CCCGCCCCGAACCAGTGGTTTCGATTCATCACGCCCATCTTCATGCACGCCGGCCTCATCCACATCGGCTTCAAC CTCCTGATGCAGCTGACGATAGCCAAGGAGATGGAGGTGGCCATCGGCCCCATCCGCTTTTTCATCGTCTACATG AGCGCCGGCATCTTTGGCTTCGTCCTCGGTGGCAACTTTGCCGCCCCCGCCCTGCCCTCGACCGGCGCGTCGGGC GCCCTCTTCGGCGTCATCGCCCTCACCCTCCTCGACCTGTTTTACTCGTGGAAGGAGCGCAAGCAACCTGTCAAG GACTTGATGTTCCTCCTCCTCGACATGGTCATCTCCTTCGCCCTCGGTCTGCTGCCCGGCCTGGACAACTTCGCC CACATCGGCGGCTTCGTCATGGGACTCGGCCTCGGCATCTGCGTCCTCCACTCCCCCAACTCCCTCCGCAGACGC ATGGGCAGCGGCACCCCCTACTCGGCCGTCTTTCCGGGAGACGGCCCGACGGCCGCGTCCGTCTTCAAAGGCCCG CTCGGCTTCTTTAAGGGCCGGAAGCCGTTCTGGTGGTTCTGGTGGATTGTCAGGGCCATCGTCCTCATCATCGTC ATCGTCGTCTTCGTCGTCTTCATCAACTACTTCTACACGGCCCGAGACAGGTGCGAATGGTGCAAATACCTCAGC TGCATTCCCGTCAGTAATTGGTGCGAGATTGGGACGATTCGTCAAACGCACTGA |
| Gene | >Hirsu2|7700 ATGGCTTCCCACGAGCATCCCCACGCCCTCAACGACCCTCCACCCGCTACCTACCACGGCGCGCACTTCGCTCCG TCGCCCCAGCCGACGCCTGCGCCGTCCTATCACTCGGCCCACCAGATACCGCCGCCATCGCACACGCCACGACTC TTCGGCGCCCCCCACGACTCGCCTCCTCGATCCACCGCCTCTCCGTTCGACACCGTCTTCGACGATCCCGCCTAC CCTCACCACCAAAGGGCCTACGCCCCGGGCCCCCCTGCCGCCATGCCTCAGCAAGGCCTCTACCAAGACACGGGC TACCACGGCCCCGGCGCCGCGCCCGCCCCGAGTCCACACGTGACCGAGGACATCCCGCTGCGAGAACAGCCAAAC AAGAACAGCGACCTCAACGACCACGTATACGACACGCTCGTCTCCGAAAACGAAAGGCAGCGCTCGAGAAACCGG GGCAAGGTCCGGCTGGGAGAACTGGGCATGTTCGGCGCCAATAGCAAGAGGATCCCCTGGGTCGTCTACCTCTTC ACCGTCGTCCAGGTCGCCGTCTTCATCGCCGAAATCATCAAGAACGGTAAGGTGCCGAGGCTTTCCCGCCGCCCC GTCGGCATGCTGATTCCCTCCCAGGCATCTTGACGGGCTCGCCCATCATGATCAAGCCTCAGTTCAACCCCATGA TCGGCCCCTCCACCCAGGTCATGATCAACATGGGCGCCCGCTACGTTCCCTGCATGCACAACGTTCGAGAGATCC AGGGCTCCCAGGTCCCCGTCCTCTTCCTCTGCCCCAACGCCACCACCAACGACAACTTTTGTCCCCTCTCCGACC TCTGCGGCTTCGGCGGCGTTCCCAACCCGACCTTCAACGACGTGAACCAGAGTCCCGCCCCGAACCAGTGGTTTC GATTCATCACGCCCATCTTCATGCACGCCGGCCTCATCCACATCGGCTTCAACCTCCTGATGCAGCTGACGATAG CCAAGGAGATGGAGGTGGCCATCGGCCCCATCCGCTTTTTCATCGTCTACATGAGCGCCGGCATCTTTGGCTTCG TCCTCGGTGGCAACTTTGCCGCCCCCGCCCTGCCCTCGACCGGCGCGTCGGGCGCCCTCTTCGGCGTCATCGCCC TCACCCTCCTCGACCTGTTTTACTCGTGGAAGGAGCGCAAGCAACCTGTCAAGGACTTGATGTTCCTCCTCCTCG ACATGGTCATCTCCTTCGCCCTCGGTCTGCTGCCCGGCCTGGACAACTTCGCCCACATCGGCGGCTTCGTCATGG GACTCGGCCTCGGCATCTGCGTCCTCCACTCCCCCAACTCCCTCCGCAGACGCATGGGCAGCGGCACCCCCTACT CGGCCGTCTTTCCGGGAGACGGCCCGACGGCCGCGTCCGTCTTCAAAGGCCCGCTCGGCTTCTTTAAGGGCCGGA AGCCGTTCTGGTGGTTCTGGTGGATTGTCAGGGCCATCGTCCTCATCATCGTCATCGTCGTCTTCGTCGTCTTCA TCAACTACTTCTACACGGCCCGAGACAGGTGCGAATGGTGCAAATACCTCAGCTGCATTGTGAGTCCGATCTCGC CTCCTCCACGCCCCCTTTGCTAACATCAAGACAGCCCGTCAGTAATTGGTGCGAGATTGGGACGATTCGTCAAAC GCACTGA |