© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|7696 |
| Gene name | |
| Location | Contig_462:52..265 |
| Strand | + |
| Gene length (bp) | 213 |
| Transcript length (bp) | 213 |
| Coding sequence length (bp) | 213 |
| Protein length (aa) | 71 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12678 | zf-rbx1 | RING-H2 zinc finger domain | 2.1E-12 | 5 | 64 |
| PF13639 | zf-RING_2 | Ring finger domain | 1.3E-09 | 37 | 64 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 1.8E-08 | 6 | 63 |
| PF13923 | zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger) | 7.9E-07 | 37 | 63 |
| PF14634 | zf-RING_5 | zinc-RING finger domain | 1.1E-07 | 6 | 64 |
| PF13445 | zf-RING_UBOX | RING-type zinc-finger | 3.1E-05 | 6 | 54 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P36096|TUL1_YEAST | Transmembrane E3 ubiquitin-protein ligase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TUL1 PE=1 SV=1 | 4 | 70 | 2.0E-16 |
| sp|O43085|DSC1_SCHPO | DSC E3 ubiquitin ligase complex subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dsc1 PE=1 SV=2 | 6 | 70 | 2.0E-10 |
| sp|Q9SK92|ATL15_ARATH | E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15 PE=1 SV=1 | 8 | 70 | 6.0E-08 |
| sp|Q9C7I1|ATL34_ARATH | RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2 SV=1 | 3 | 69 | 9.0E-08 |
| sp|Q84W40|ATL11_ARATH | RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2 SV=2 | 8 | 70 | 2.0E-07 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P36096|TUL1_YEAST | Transmembrane E3 ubiquitin-protein ligase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TUL1 PE=1 SV=1 | 4 | 70 | 2.0E-16 |
| sp|O43085|DSC1_SCHPO | DSC E3 ubiquitin ligase complex subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dsc1 PE=1 SV=2 | 6 | 70 | 2.0E-10 |
| sp|Q9SK92|ATL15_ARATH | E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15 PE=1 SV=1 | 8 | 70 | 6.0E-08 |
| sp|Q9C7I1|ATL34_ARATH | RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2 SV=1 | 3 | 69 | 9.0E-08 |
| sp|Q84W40|ATL11_ARATH | RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2 SV=2 | 8 | 70 | 2.0E-07 |
| sp|Q5XHH7|SYVNB_XENLA | E3 ubiquitin-protein ligase synoviolin B OS=Xenopus laevis GN=syvn1-b PE=2 SV=1 | 1 | 67 | 5.0E-07 |
| sp|Q6NRL6|SYVNA_XENLA | E3 ubiquitin-protein ligase synoviolin A OS=Xenopus laevis GN=syvn1-a PE=2 SV=1 | 1 | 67 | 7.0E-07 |
| sp|Q9C919|ATL19_ARATH | Putative RING-H2 finger protein ATL19 OS=Arabidopsis thaliana GN=ATL19 PE=3 SV=1 | 41 | 68 | 3.0E-06 |
| sp|Q9ZU51|RHA2B_ARATH | Probable E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2 | 3 | 69 | 6.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0043169 | cation binding | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|7696 LRAIDCAICREALEVPVLRAGDEDGSVAGVFARRLYMVTPCRHIFHTACLEGWMRFRLQCPICREDLPPV* |
| Coding | >Hirsu2|7696 CTGCGCGCCATCGACTGCGCCATCTGCCGCGAGGCCCTCGAGGTGCCCGTCCTGCGCGCCGGCGACGAGGACGGC TCCGTCGCCGGCGTCTTCGCCCGCCGCCTCTACATGGTCACGCCCTGCCGCCACATCTTCCACACCGCCTGCCTC GAGGGCTGGATGCGCTTCCGCCTGCAGTGCCCCATCTGCAGGGAGGACCTGCCGCCCGTCTGA |
| Transcript | >Hirsu2|7696 CTGCGCGCCATCGACTGCGCCATCTGCCGCGAGGCCCTCGAGGTGCCCGTCCTGCGCGCCGGCGACGAGGACGGC TCCGTCGCCGGCGTCTTCGCCCGCCGCCTCTACATGGTCACGCCCTGCCGCCACATCTTCCACACCGCCTGCCTC GAGGGCTGGATGCGCTTCCGCCTGCAGTGCCCCATCTGCAGGGAGGACCTGCCGCCCGTCTGA |
| Gene | >Hirsu2|7696 CTGCGCGCCATCGACTGCGCCATCTGCCGCGAGGCCCTCGAGGTGCCCGTCCTGCGCGCCGGCGACGAGGACGGC TCCGTCGCCGGCGTCTTCGCCCGCCGCCTCTACATGGTCACGCCCTGCCGCCACATCTTCCACACCGCCTGCCTC GAGGGCTGGATGCGCTTCCGCCTGCAGTGCCCCATCTGCAGGGAGGACCTGCCGCCCGTCTGA |