© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|7652 |
| Gene name | |
| Location | Contig_457:15079..16201 |
| Strand | - |
| Gene length (bp) | 1122 |
| Transcript length (bp) | 813 |
| Coding sequence length (bp) | 813 |
| Protein length (aa) | 271 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04699 | P16-Arc | ARP2/3 complex 16 kDa subunit (p16-Arc) | 3.5E-42 | 112 | 270 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P40518|ARPC5_YEAST | Actin-related protein 2/3 complex subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARC15 PE=1 SV=1 | 123 | 270 | 2.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0015629 | actin cytoskeleton | Yes |
| GO:0005885 | Arp2/3 protein complex | Yes |
| GO:0034314 | Arp2/3 complex-mediated actin nucleation | Yes |
| GO:0030833 | regulation of actin filament polymerization | Yes |
| GO:0016043 | cellular component organization | No |
| GO:0043229 | intracellular organelle | No |
| GO:0090066 | regulation of anatomical structure size | No |
| GO:0032956 | regulation of actin cytoskeleton organization | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0030832 | regulation of actin filament length | No |
| GO:0033043 | regulation of organelle organization | No |
| GO:0051493 | regulation of cytoskeleton organization | No |
| GO:0043226 | organelle | No |
| GO:0032970 | regulation of actin filament-based process | No |
| GO:0043228 | non-membrane-bounded organelle | No |
| GO:0043254 | regulation of protein-containing complex assembly | No |
| GO:0008150 | biological_process | No |
| GO:0051128 | regulation of cellular component organization | No |
| GO:0043232 | intracellular non-membrane-bounded organelle | No |
| GO:0032271 | regulation of protein polymerization | No |
| GO:0044087 | regulation of cellular component biogenesis | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0050789 | regulation of biological process | No |
| GO:0032535 | regulation of cellular component size | No |
| GO:0005575 | cellular_component | No |
| GO:0110053 | regulation of actin filament organization | No |
| GO:0005856 | cytoskeleton | No |
| GO:0045010 | actin nucleation | No |
| GO:1902903 | regulation of supramolecular fiber organization | No |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0065008 | regulation of biological quality | No |
| GO:0008064 | regulation of actin polymerization or depolymerization | No |
| GO:0007015 | actin filament organization | No |
| GO:0065007 | biological regulation | No |
| GO:0097435 | supramolecular fiber organization | No |
| GO:0032991 | protein-containing complex | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Golgi apparatus | Signal peptide | 0.3564 | 0.2056 | 0.3274 | 0.281 | 0.1928 | 0.383 | 0.5529 | 0.5256 | 0.6025 | 0.2365 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 3864 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|7652 MTAGRIASLFSSGPAVVLVVVAVVVLARLVDALEAHVPPVARRRGRAQVQQPALGQLLLVAAAAGGAAEAAASVS FRPDAAPLPSPVPMLRAVSPRLGSIDARLAPDRLRFSPAADVRHLAAQVRQLLRAGDAHGALRGCLETPVYNGPD AAKEAHLQTIVEILQSIKASDMSPLLTAIYESPGGSECLDVLMKYIYKGMAVGSPAAALRSPSKVTPQSTGGFSQ VGGRPGAANESTASSMSVLLSWHEKLVDVAGLGCIGRTMTDWRRV* |
| Coding | >Hirsu2|7652 ATGACCGCCGGCAGGATCGCCTCCCTCTTCTCTTCAGGCCCCGCCGTGGTGCTCGTCGTCGTCGCTGTCGTCGTC CTCGCCAGACTCGTCGACGCTCTCGAGGCGCACGTCCCACCAGTCGCGCGGCGCCGAGGCCGGGCGCAGGTGCAG CAGCCGGCTCTCGGCCAGCTCCTCCTCGTCGCGGCGGCGGCGGGCGGCGCGGCCGAGGCGGCGGCGTCGGTCAGC TTCAGGCCCGACGCCGCGCCGCTGCCGAGCCCGGTGCCGATGTTGAGGGCCGTCTCGCCCAGGTTGGGCAGCATC GACGCCAGGCTGGCGCCCGACAGGTTGAGGTTCTCCCCCGCTGCCGACGTCCGCCACCTCGCCGCCCAGGTCCGG CAGCTGCTGCGCGCCGGCGACGCCCACGGCGCCCTGCGCGGCTGTCTCGAGACGCCCGTCTACAACGGGCCCGAC GCCGCCAAGGAGGCCCACCTGCAGACCATCGTCGAGATCCTCCAGTCCATCAAGGCCAGCGACATGAGCCCCCTG CTCACGGCCATCTACGAGTCCCCCGGCGGCAGCGAATGCCTGGACGTGCTGATGAAGTACATCTACAAGGGCATG GCGGTGGGCAGTCCCGCCGCCGCGCTGCGGTCGCCCTCCAAGGTCACGCCGCAGTCCACCGGCGGCTTCAGCCAG GTCGGCGGCCGGCCCGGCGCGGCCAACGAGTCCACCGCCTCGTCCATGAGCGTCCTGCTGAGCTGGCACGAGAAG CTCGTCGACGTCGCCGGCCTGGGCTGCATCGGGCGCACCATGACGGACTGGCGCAGGGTGTAG |
| Transcript | >Hirsu2|7652 ATGACCGCCGGCAGGATCGCCTCCCTCTTCTCTTCAGGCCCCGCCGTGGTGCTCGTCGTCGTCGCTGTCGTCGTC CTCGCCAGACTCGTCGACGCTCTCGAGGCGCACGTCCCACCAGTCGCGCGGCGCCGAGGCCGGGCGCAGGTGCAG CAGCCGGCTCTCGGCCAGCTCCTCCTCGTCGCGGCGGCGGCGGGCGGCGCGGCCGAGGCGGCGGCGTCGGTCAGC TTCAGGCCCGACGCCGCGCCGCTGCCGAGCCCGGTGCCGATGTTGAGGGCCGTCTCGCCCAGGTTGGGCAGCATC GACGCCAGGCTGGCGCCCGACAGGTTGAGGTTCTCCCCCGCTGCCGACGTCCGCCACCTCGCCGCCCAGGTCCGG CAGCTGCTGCGCGCCGGCGACGCCCACGGCGCCCTGCGCGGCTGTCTCGAGACGCCCGTCTACAACGGGCCCGAC GCCGCCAAGGAGGCCCACCTGCAGACCATCGTCGAGATCCTCCAGTCCATCAAGGCCAGCGACATGAGCCCCCTG CTCACGGCCATCTACGAGTCCCCCGGCGGCAGCGAATGCCTGGACGTGCTGATGAAGTACATCTACAAGGGCATG GCGGTGGGCAGTCCCGCCGCCGCGCTGCGGTCGCCCTCCAAGGTCACGCCGCAGTCCACCGGCGGCTTCAGCCAG GTCGGCGGCCGGCCCGGCGCGGCCAACGAGTCCACCGCCTCGTCCATGAGCGTCCTGCTGAGCTGGCACGAGAAG CTCGTCGACGTCGCCGGCCTGGGCTGCATCGGGCGCACCATGACGGACTGGCGCAGGGTGTAG |
| Gene | >Hirsu2|7652 ATGACCGCCGGCAGGATCGCCTCCCTCTTCTCTTCAGGCCCCGCCGTGGTGCTCGTCGTCGTCGCTGTCGTCGTC CTCGCCAGACTCGTCGACGCTCTCGAGGCGCACGTCCCACCAGTCGCGCGGCGCCGAGGCCGGGCGCAGGTGCAG CAGCCGGCTCTCGGCCAGCTCCTCCTCGTCGCGGCGGCGGCGGGCGGCGCGGCCGAGGCGGCGGCGTCGGTCAGC TTCAGGCCCGACGCCGCGCCGCTGCCGAGCCCGGTGCCGATGTTGAGGGCCGTCTCGCCCAGGTTGGGCAGCATC GACGCCAGGCTGGCGCCCGACAGGTTGAGGTTCTCCGTCAGCGACTTGCTGGCGCCGAAGCCCAGGCTGCCGACG ATGCCGGCGAGGCCCGAGTCGTTGCTCTCCGGGCGCGCGGCGCCGCTCGGCATCAGCTGCAGGCCCATGGCCGCC CCGTTGCCCAGCCCGCTGCCGACGTCCGCCACCTCGCCGCCCAGGTCCGGCAGCTGCTGCGCGCCGGCGACGCCC ACGGCGCCCTGCGCGGCTGTCTCGAGACGCCCGTCTACAACGGGCCCGACGCCGCCAAGGTGAGGCCCAGAAGCA GGCGAAGAAGAAGGAGGAAGACGAGGGGCGAGTCTACCGACGGGGCGCAGCGTCGCTGACGGCGAGGCCCGTCCC CCCTCCCCCCCCCTCCTCCCTAGGAGGCCCACCTGCAGACCATCGTCGAGATCCTCCAGTCCATCAAGGCCAGCG ACATGAGCCCCCTGCTCACGGCCATCTACGAGTCCCCCGGCGGCAGCGAATGCCTGGACGTGCTGATGAAGTACA TGTGCGCCGCCGCCCTCCGCCCGCCCCCTCCCCCCGTCCGGCTCGACGCTGACCGACCCTCCCGCCCGCAGCTAC AAGGGCATGGCGGTGGGCAGTCCCGCCGCCGCGCTGCGGTCGCCCTCCAAGGTCACGCCGCAGTCCACCGGCGGC TTCAGCCAGGTCGGCGGCCGGCCCGGCGCGGCCAACGAGTCCACCGCCTCGTCCATGAGCGTCCTGCTGAGCTGG CACGAGAAGCTCGTCGACGTCGCCGGCCTGGGCTGCATCGGGCGCACCATGACGGACTGGCGCAGGGTGTAG |