Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|7622
Gene name
LocationContig_452:17678..18167
Strand+
Gene length (bp)489
Transcript length (bp)342
Coding sequence length (bp)342
Protein length (aa) 114

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF06140 Ifi-6-16 Interferon-induced 6-16 family 4.8E-11 26 98

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0044425 membrane part No
GO:0005575 cellular_component No
GO:0031224 intrinsic component of membrane No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 20 0.5

Transmembrane Domains

Domain # Start End Length
1 21 43 22
2 82 104 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|7622
MWLADIVRFFKRHACTVLAMIPGILVVLAPAIVATPVLGILGFTTTGISAGSTAAALQSSLGSVTAPCLFSTLQS
AAMGGYGVAAVNGFVQGVGAMVATGTAIVKTRKAGKGD*
Coding >Hirsu2|7622
ATGTGGTTGGCCGATATCGTCAGGTTTTTCAAGCGACATGCTTGTACCGTCCTCGCTATGATCCCGGGAATTCTG
GTTGTTCTGGCTCCGGCCATCGTTGCCACACCCGTGTTGGGAATCTTAGGCTTCACTACAACCGGGATCAGTGCA
GGCTCGACTGCCGCTGCGCTTCAGAGCAGCCTTGGTTCCGTCACTGCGCCATGCCTCTTCTCAACACTCCAGAGT
GCAGCAATGGGGGGGTATGGCGTAGCTGCTGTGAATGGCTTCGTGCAGGGTGTTGGCGCCATGGTAGCCACGGGC
ACGGCTATTGTCAAGACTAGGAAGGCTGGGAAAGGCGACTGA
Transcript >Hirsu2|7622
ATGTGGTTGGCCGATATCGTCAGGTTTTTCAAGCGACATGCTTGTACCGTCCTCGCTATGATCCCGGGAATTCTG
GTTGTTCTGGCTCCGGCCATCGTTGCCACACCCGTGTTGGGAATCTTAGGCTTCACTACAACCGGGATCAGTGCA
GGCTCGACTGCCGCTGCGCTTCAGAGCAGCCTTGGTTCCGTCACTGCGCCATGCCTCTTCTCAACACTCCAGAGT
GCAGCAATGGGGGGGTATGGCGTAGCTGCTGTGAATGGCTTCGTGCAGGGTGTTGGCGCCATGGTAGCCACGGGC
ACGGCTATTGTCAAGACTAGGAAGGCTGGGAAAGGCGACTGA
Gene >Hirsu2|7622
ATGTGGTTGGCCGATGTGAGCGTTCTCTCGGCCTGCGTGTCCTTGCTTTGCTGCTTTGCCAATGAGAAAACAGAT
CGTCAGGTTTTTCAAGCGACATGCTTGTACCGTCCTCGCTATGATCCCGGGAATTCTGGTTGTTCTGGCTCCGGC
CATCGTTGCCACACCCGTGTTGGGAATCTTAGGCTTCACTACAACCGGGATCAGTGCAGGTTCGTGGTAGTGTTC
TCCCAATTCATTTGCTGTTGCCCTTCTGTGCACTTTTAGCCATGCTCCAAGTGAGATTGACTTGACACCCCAGGC
TCGACTGCCGCTGCGCTTCAGAGCAGCCTTGGTTCCGTCACTGCGCCATGCCTCTTCTCAACACTCCAGAGTGCA
GCAATGGGGGGGTATGGCGTAGCTGCTGTGAATGGCTTCGTGCAGGGTGTTGGCGCCATGGTAGCCACGGGCACG
GCTATTGTCAAGACTAGGAAGGCTGGGAAAGGCGACTGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail